Click here for NEW RiboVision2.0!

Current version of RiboVision is obsolete!

RiboVision Manual

Select

Species/Subunit

Built-In Structures:

Custom Structures:
Example 2D Structure
Import Custom Structure:


Post-transcriptional Modifications:

Select

Nucleotides: e.g. 5S:(1-10)





Select domains or helices:

Nucleotide Data

Phylogeny Data

Protein Contacts

Inter-Nucleotide Contacts

Help?

Interaction Type:
Interaction Sub-Type:

Import

Display

2D Layers


3D Panel

Save

COOL Logo
2D Panel Your browser does not support Canvas and can not use this site. We recommend Firefox. Internet Explorer users need to be at least on version 9, which requires Windows Vista or higher. Internet Explorer 10 (Windows 7 or higher) is needed for all features to work. Check out this nice table of browser support.. Also, in order to use Custom Data Feature, check out this table.

1D Panel
3D Panel








Layer Color:
Layer Color:
Pick Color:

Pick Color:

Line Opacity: 50%

Replace Me Text.

Replace Me Text.

Replace Me Text.

Sorry, the color you have entered is invalid. It is neither a valid "Hex Code" nor a valid HTML5 color name. Please try again.

Sorry, all layer names must be unique. The name you entered already exists. Please try again.

Sorry, all selection names must be unique. The name you entered already exists. Please try again.

You attempted to put nucleotide data into an incompatible layer. Please select a circle, residue, or contour layer. You may create a new circle or contour layer if you like.

This name is not allowed under the current naming rules. Names must begin with a letter and cannot exceed 16 characters. Only letters, digits ([0-9]), hyphens ("-"), underscores ("_"), colons (":"), and periods (".") are allowed.

Choose file.

Load Data Set:

RiboVision saves images from each panel separately.

1D Panel

The 1D Panel can be saved as an SVG.


2D Panel

Would you like to export just the visible layers, or all layers?

SVG files are best for further editing.


PDF files are best for printing and sharing.


PNG and JPG files are good for presentations. PNG has the advantage of a transparent background.

3D Panel

Save the 3D Panel as a PNG.


Additionally, you may export a PyMOL Script for further processing in PyMOL.

Plain Sequences

Sequences (including partial sequences from selections) can be exported in a standard fasta format.

Sequences (including partial sequences from selections) can be exported to native RiboVision format. These files contain nucleotide numbers and optionally can be imported into RiboVison using the Import function.

Data & Sequences

Sequences can be saved along with data from all layers in native RiboVision format.

Nucleotide-Nucleotide Interactions can also be exported to native RiboVision format. These files can further be imported into RiboVision using the Import function.

Restore Default State

All Locations:








File / Server only:


Save in Browser

Session Name:






Saved Sessions:



Save to File

Session Name:


We can not support restoring directly from zip files. Please unzip your RiboVision Session before restoring.

Layer Name:
Layer Color:
Selection Color:

Please Sign Up

Already a member? Login

'.$error.'

'; } } //if action is joined show sucess if(isset($_GET['action']) && $_GET['action'] == 'joined'){ echo "

Registration successful, please check your email to activate your account.

"; } ?>

General Settings

One Button Mode:






Resize 2D & 3D panels


Resize 1D Panel

1D Panel

2D Panel

ResidueTip:

Zoom-Aware Lines:

3D Panel

The 3D Panel can be turned on and off. This panel is powered through NGL Viewer.

3D Panel:
BaseView Mode: