rRNA secondary structures allow organization and illustration of three-dimensional architecture, local molecular interactions, phylogeny, evolution, and function. Our goal is to represent secondary structures that are as accurate and useful as possible, using 3D crystal structures, or full atom models into good Cyro-EM models, ribosomes as input. We offer secondary structures for 23S/28S/5S and 16S/18S rRNAs of E. coli, Thermus thermophilus, Haloarcula marismortui, Saccharomyces cerevisiae, Drosophila melanogaster, and Homo sapiens. Both the large and small subunit are available for each species, except the small subunit for Haloarcula marismortui. All species have a 3D-based secondary strucutre available. Some species also have a classic phylogeny-based structure available. Additionally, we provide high-resolution editable versions of those structures mapped with a variety of data related to molecular interactions and geometry, phylogeny and evolution, and partitioning of rRNA into helices and domains (http://apollo.chemistry.gatech.edu/RibosomeGallery).
Petrov et al., (2013) "Secondary Structure and Domain Architecture of the 23S rRNA", Nucleic Acids Res. doi: 10.1093/nar/gkt513
http://www.rna.icmb.utexas.edu/CAR/1A/ http://rna.ucsc.edu/rnacenter/ribosome_images.html
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