>Acinetobacter_sp.
------------------AGAGUUUGAUCAUG-GCUCAGAUUGA-ACGCUGGCGGC-A-G
GC-UUAACACAUGCAAGUCGAGCGGGG-GAA----------GGUAG------CU---U-G
-------CUACC-------------G-GA--CC-UAG-CGGCG-GACGGGUGAGUAAUGC
UUAGGA-AU-CUGCCUAUUAG---------------------UGGGGG-ACAACAU--C-
U-CGAAA-GGGAUGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UACGU-CC-------------------------------------------
------------------------------------------------------------
----U-AC-G-------------GGA-GAAA-GCAGGGGAUC---------------U--
U-C-G--------------GACCUUGCGCUAAUAGAUGAGCCUAAG-UCGGAUUA-GCUA
--GUUGGUGGGGUAAAGGCCUA-CCAAGGCGACGAUCUGU-AGCGGGUCUGAGAGGAU-G
AUCCGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGC-GCA----AGCCUGAUCCAGCCAUGCCGCGU--GUGUGAAGAAGG
CC--UU-AU--GGUU-GU-AAAG-CACUUUAAGCGAGGAGGAGGCUACUUUAG--AUAAU
A-C-CUAGAGAUAGUGGACGUUACUCGCAG-AAUAAGCACC-GGCUA-ACU-CUGUGCCA
GCAGCCGCGGUAAUACAGAGGGUGCAAGCGUUAAUCGGAUUUACUGGGCGUAAAGCGCGC
GUAGGCGGCUAAU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAAAUGUGAAAUCCCCGAGCUUAACU-
--------------------------------UGGG-AA-UUGCAUUCGAUACUGGUU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUA--GAGUGUGGGA
G-AGGAUGGUAGAA-UUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCG
AUGGCGAAGGCAGCCAUCUGGCCUAACACUGACGCUGAGGUGCGAAAGCAUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCAUGCCGUAAACGAUGU-CUACUAGCCGUUGGGGC
C-----------------------------------------------------------
---UUUGA----------------------------------------------------
----------------------GGCUUUAGU-GGCGCAGCUAACGC-GAUAAGUA-----
-------GACC-GCCUGGGGAGUACGG-UCGCAAGAC-UAAAACUCAAAUGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-GGCCUUGACAUAGUA-A--G-A-ACUU-UCCA--GAGA---UGGA-U-UGGUG-
----CC-UUCG-GG----AACUUAC-AUACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UUUCC-UUAUUUGCC-A
GCGA--------------------------------------------------------
------------------------------------------------------------
------------G---U-AA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GU----------
--C-G---------GGAACUUUAAGGAUACU-GCCA-G----UGA-CAAAC-UG-GAGGA
AGGCGGGGACGACGUCAAGUCAUC-AUGGCCCUU-ACGGCCAGGGCUACACACGUGCUAC
AAUG-GUCGGUACAAAGGGU----------------------------------------
----------------------U-GCUACACAGCGAUGUGAUGCUAA-UCUC--A-AAAA
GCCGAUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGCGG-AUCAGA-AUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUUGUUGC-ACCAGAAGUAGCUAGCCUAACU---------------
----G-CA-A----------------------AGAGGGCG----------GUUACC-ACG
GUGUGGCCGAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUG-
----------------------
>Agrobacterium_tumefaciens
---------------UUGAGAGUUUGAUCCUG-GCUCAGAACGA-ACGCUGGCGGC-A-G
GC-UUAACACAUGCAAGUCGAACGCCC------------------C------GC---A-A
-------G-----------------------GG-GAG-UGGCA-GACGGGUGAGUAACGC
GUGGGA-AU-CUACCCAUCUC---------------------UGCGGA-AUAGCUC--U-
G-GGAAA-CUGGAAUUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UACGC-CC-------------------------------------------
------------------------------------------------------------
----U-AC-G-------------GGG-GAAA-GA-----------------------U--
U-U-A--------------------UCGGGGAUGGAUGAGCCCGCG-UUGGAUUA-GCUA
--GUUGGUGGGGUAAAGGCCUA-CCAAGGCGACGAUCCAU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGC-GCA----AGCCUGAUCCAGCCAUGCCGCGU--GAGUGAUGAAGG
CC--UU-AG--GGUU-GU-AAAG-CUCUUUCACCGAUGAAGA-------------UA---
A--------------UGACGGUAGUCGGAG-AAGAAGCCCC-GGCUA-ACU-UCGUGCCA
GCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCAC
GUAGGCGGAUAUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGGGGUGAAAUCCCGCAGCUCAACU-
--------------------------------GCGG-AA-CUGCCUUUGAUACUGGGU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AUCUU--GAGUAUGGAA
G-AGGUAAGUGGAA-UUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCA
GUGGCGAAGGCGGCUUACUGGUCCAUUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-AUGUUAGCCGUCGGGCA
G-----------------------------------------------------------
----UAUA----------------------------------------------------
----------------------CUGUUCGGU-GGCGCAGCUAACGC-AUUAAACA-----
-------UUCC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAA-CCUU-
A-CCA-GCUCUUGACAUUCGGGG--U-A-UGGGCAUUG--GAGA---CGAUGU-CCUUC-
----AG-UUAGGCU----GGCCCCA-GAACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGCCC-UUAGUUGCC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-UA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAAGGGGACU-GCCG-G----UGA-UAAGC-CGAGAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-ACGGGCUGGGCUACACACGUGCUAC
AAUG-GUGGUGACAGUGGGC----------------------------------------
----------------------A-GCGAGACAGCGAUGUCGAGCUAA-UCUC--C--AAA
AGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUG-AAGUUGGAAUCGCUAGU
AAUCGCAG-AUCAGC-AUGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGUUUU-ACCCGAAGGUAGUGCGCUAACC---------------
----G-CA-A----------------------GGAGGCAG----------CUAACC-ACG
GUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUU-----------
>Anabaena_variabilis
------------AAACGGAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUGGCGGU-A-U
GC-UUAACACAUGCAAGUCGAACGGAA-----------------UC------UU---C-G
-------GA----------------------UU-UAG-UGGCG-GACGGGUGAGUAACGC
GUGAGA-AU-CUAGCUCUAGG---------------------UCGGGG-ACAACCA--C-
U-GGAAA-CGGUGGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UGU-G-CC-------------------------------------------
------------------------------------------------------------
----G-AA-A-------------GGU-GAAA-GA-----------------------U--
U-U-A--------------------UUGCCUAGAGAUGAGCUCGCG-UCUGAUUA-GCUA
--GUUGGUGUGGUAAGAGCGCA-CCAAGGCGACGAUCAGU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUCCGCAAUGGGC-GAA----AGCCUGACGGAGCAAUACCGCGU--GAGGGAGGAAGG
CU--CU-UG--GGUU-GU-AAAC-CUCUUUUCUCAGGGAAUA-------------AGAAA
G--------------UGAAGGUACCUGAGG-AAUAAGCAUC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGAUGCAAGCGUUAUCCGGAAUGAUUGGGCGUAAAGCGUCC
GCAGGUGGCACUG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGCUGUUAAAGAGCAAGGCUCAACC-
--------------------------------UUGU-AA-AGGCAGUGGAAACUACAG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUA--GAGUACGUUC
G-GGGCAGAGGGAA-UUCCUGGUGUAGCGGUGAAAUGCGUAGAGAUCAGGAAGAACACCG
GUGGCGAAAGCGCUCUGCUAGGCCGUAACUGACACUGAGGGACGAAAGCUAGGGGAGCGA
AUGGGAUUAGAUACCCCA-GUAGUCCUAGCCGUAAACGAUGG-AUACUAGGCGUGGCUUG
U-----------------------------------------------------------
---AUCGA----------------------------------------------------
---------------------CCCGAGCCGU-GCCGGAGCCAACGC-GUUAAGUA-----
-------UCCC-GCCUGGGGAGUACGC-ACGCAAGUG-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGUAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCA-AGACUUGACAUGUCG-C--G-A-AUCU-UCUU--GAAA---GGGA-A-GAGUG-
----CC-UUAG-GG----AGCGCGA-ACACAGG-UGGUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUUU-UUAGUUGCC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAGAGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAGC-AUGCCCCUU-ACGUCUUGGGCUACACACGUACUAC
AAUG-CUACGGACAGAGGGC----------------------------------------
----------------------A-GCAAGCUAGCGAUAGCAAGCAAA-UCCC--G-UAAA
CCGUAGCUCAGUUCAGAUCGCAGGCUGCAACUCGCCUGCGUG-AAGGAGGAAUCGCUAGU
AAUUGCAG-GUCAGC-AUACUGCAGUGAAUUCGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGAAG-CUGGCAAC-GCCCGAAGUCAUUACUCCAACCA--------------
----U-UC-G---------------------UGGGGGAGG----------AUGCCU-AAG
GCAGUGCUGGUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGUGGCUGG
AUCACCUCCUUU----------
>Azoarcus_sp.
------------AACUUAAGAGUUUGAUCCUG-GCUCAGAUUGA-ACGCUGGCGGC-A-U
GC-UUUACACAUGCAAGUCGAACGGCAGCGG-----------GGGC------UU---C-G
-------GCCC-----------G--C-CG--GC-GAG-UGGCG-AACGGGUGAGUAAUGC
AUCGGA-AC-GUGCCCAGUCA---------------------UGGGGG-AUAACUA--C-
G-CGAAA-GCGUAGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UACGC-CC-------------------------------------------
------------------------------------------------------------
----U-GA-G-------------GGG-GAAA-GUGGGGGAUC---------------G--
C-A-A--------------GACCUCACGUGAUUGGAGCGGCCGAUG-UCAGAUUA-GCUA
--GUUGGUGAGGUAAAGGCUCA-CCAAGGCGACGAUCUGU-AGCGGGUCUGAGAGGAU-G
AUCCGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUGGACAAUGGGC-GAA----AGCCUGAUCCAGCCAUGCCGCGU--GAGUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CUCUUUCGGACGGAAAGAAAUCGCGCGGG--CUAAU
A-U-CCCGCG-UGGAUGACGGUACCGUAAG-AAGAAGCACC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGUGC
GCAGGCGGUUUUG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGACAGGUGUGAAAUCCCCGGGCUUAACC-
--------------------------------UGGG-AA-CUGCGCUUGUGACUGCAA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GAGUACGGCA
G-AGGGGGGUGGAA-UUCCACGUGUAGCAGUGAAAUGCGUAGAGAUGUGGAGGAACACCG
AUGGCGAAGGCAGCCCCCUGGGCCUGUACUGACGCUCAUGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCCUAAACGAUGU-CAACUAGUUGUUCGUAG
A-----------------------------------------------------------
---GGUAA----------------------------------------------------
---------------------CUCUGUGAGU-AACGCAGCUAACGC-GUGAAGUU-----
-------GACC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GCGGUGGAUGAUGUGGAUUAAUUCGAUGCAACGCGAAAAA-CCUU-
A-CCU-ACCCUUGACAUGCCU-G--G-A-ACCU-UGGU--GAGA---GCCG-A-GGGUG-
----CC-UUCG-GG----AACCAGG-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCA-UUAAUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-CA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUUUAAUGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-AUGGGUAGGGCUUCACACGUCAUAC
AAUG-GUCGGUACAGAGGGU----------------------------------------
----------------------U-GCCAAACCGCGAGGUGGAGCUAA-UCCC--U-UAAA
GCCGAUCGUAGUCCGGAUCGUAGUCUGCAACUCGACUGCGUG-AAGUCGGAAUCGCUAGU
AAUCGCAG-AUCAGC-AUGCUGCGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUUC-ACCAGAAGUAGGUAGCUUAACC---------------
----U-UC-G----------------------GGAGGGCG----------CUUACC-ACG
GUGAGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG
AUCACCUCCUU-----------
>Bacillus_anthracis
------------UUUGGAGAAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUGGCGGC-G-U
GC-CUAAUACAUGCAAGUCGAGCGAAU-GGA--------UUAAGAG------CU---U-G
-------CUCUUAU-----------G-AA--GU-UAG-CGGCG-GACGGGUGAGUAACAC
GUGGGUAAC-CUGCCCAUAAG---------------------ACUGGG-AUAACUC--C-
G-GGAAA-CCGGGGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UAACA-UUUUGAA-CC-----------------------------------
------------------------------------------------------------
----G-CA-U---GGU-UC-GAAAUU-GAAA-GGCGGC-------------------U--
U-C-G----------------GCUGUCACUUAUGGAUGGACCCGCG-UCGCAUUA-GCUA
--GUUGGUGAGGUAACGGCUCA-CCAAGGCAACGAUGCGU-AGCCGACCUGAGAGGGU-G
AUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUAGGGAA
UCUUCCGCAAUGGAC-GAA----AGUCUGACGGAGCAACGCCGCGU--GAGUGAUGAAGG
CU--UU-CG--GGUC-GU-AAAA-CUCUGUUGUUAGGGAAGAACAAGUGCUAGU-UGAAU
A-A-GCUGGC-ACCUUGACGGUACCUAACC-AGAAAGCCAC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGCGC
GCAGGUGGUUUCU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGAUGUGAAAGCCCACGGCUCAACC-
--------------------------------GUGG-AG-GGUCAUUGGAAACUGGGA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GAGUGCAGAA
G-AGGAAAGUGGAA-UUCCAUGUGUAGCGGUGAAAUGCGUAGAGAUAUGGAGGAACACCA
GUGGCGAAGGCGACUUUCUGGUCUGUAACUGACACUGAGGCGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-GUGCUAAGUGUUAGAGG
G-----------------------------------------------------------
---UUUCC----------------------------------------------------
---------------------GCCCUUUAGU-GCUGAAGUUAACGC-AUUAAGCA-----
-------CUCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAA-CCUU-
A-CCA-GGUCUUGACAUCCUC-U--G-A-CAAC-CCUA--GAGA---UAGG-G-CUUCU-
----CC-UUCG-GG----AGCAGAG-UGACAGG-UGGUGCAUGGUUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGAUC-UUAGUUACC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAAGGUGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUGCCCCUU-AUGACCUGGGCUACACACGUGCUAC
AAUG-GACGGUACAAAGAGC----------------------------------------
----------------------U-GCAAGACCGCGAGGUGGAGCUAA-UCUC--A-UAAA
ACCGUUCUCAGUUCGGAUUGUAGGCUGCAACUCGCCUACAUG-AAGCUGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCACGAGAG-UUUGUAAC-ACCCGAAGUCGGUGGGGUAACCU--------------
----U-UU-U----------------------GGAGCCAG----------CCGCCU-AAG
GUGGGACAGAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG
AUCACCU---------------
>Bacteroides_thetaiotaomicron
------CUUUUACAAUGAAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUAGCUAC-A-G
GC-UUAACACAUGCAAGUCGAGGGGCAGCAU------UUCAGUUUG------CU---U-G
-------CAAACUGGA------G--A-UG--GC-GAC-CGGCG-CACGGGUGAGUAACAC
GUAUCCAAC-CUGCCGAUAAC---------------------UCGGGG-AUAGCCU--U-
U-CGAAA-GAAAGAUUAAUACCCGA-----------------------------------
------------------------------------------------------------
---------UGGUAUAAUCAGA-CC-----------------------------------
------------------------------------------------------------
----G-CA-U---GGU-CU-UGUUAU-UAAA-GA-----------------------A--
U-U----------------------UCGGUUAUCGAUGGGGAUGCG-UUCCAUUA-GGCA
--GUUGGUGAGGUAACGGCUCA-CCAAACCUUCGAUGGAU-AGGGGUUCUGAGAGGAA-G
GUCCCCCACAUUGGAACUGAGACACGGUCCAAACUCCUACGG-GAGGCAGCAGUGAGGAA
UAUUGGUCAAUGGGC-GCA----GGCCUGAACCAGCCAAGUAGCGU--GAAGGAUGACUG
CCC-UA-UG--GGUU-GU-AAAC-UUCUUUUAUAUGGGAAUAAAGUUUUCCA---CG--U
G-----UGGA-AUUUUGUAUGUACCAUAUG-AAUAAGGAUC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGAUCCGAGCGUUAUCCGGAUUUAUUGGGUUUAAAGGGAGC
GUAGGUGGACAGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGUUGUGAAAGUUUGCGGCUCAACC-
--------------------------------GUAA-AA-UUGCAGUUGAUACUGGCU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GUCUU--GAGUACAGUA
G-AGGUGGGCGGAA-UUCGUGGUGUAGCGGUGAAAUGCUUAGAUAUCACGAAGAACUCCG
AUUGCGAAGGCAGCUCACUGGACUGCAACUGACACUGAUGCUCGAAAGUGUGGGUAUCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACACAGUAAACGAUGA-AUACUCGCUGUUUGCGA
------------------------------------------------------------
----UAUA----------------------------------------------------
-----------------------CAGUAAGC-GGCCAAGCGAAAGC-AUUAAGUA-----
-------UUCC-ACCUGGGGAGUACGC-CGGCAACGGGUGAAACUCAAAGGAAUUGACGG
GGGCCCGU-ACAA-GCGGAGGAACAUGUGGUUUAAUUCGAUGAUACGCGAGGAA-CCUU-
A-CCC-GGGCUUAAAUUGCAUUU--G-A-AUAU-AUUG--GAAA---CAGU-A-UAG---
----CC-GUAA-GG------CAAAU-GUGAAGG-UGCUGCAUGGUUGUCGUCAGCUCGUG
CC-GUGAGGUGUCGGCUUAAGUGCCAUAACGAGCGCAACCCU-UAUCU-UUAGUUACU-A
ACAG--------------------------------------------------------
------------------------------------------------------------
------------G---U-CA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GC----------
--U-G---------AGGACUCUAGAGAGACU-GCCG-U----CG--UAAGA-UGUGAGGA
AGGUGGGGAUGACGUCAAAUCAGC-ACGGCCCUU-ACGUCCGGGGCUACACACGUGUUAC
AAUG-GGGGGUACAGAAGGC----------------------------------------
----------------------A-GCUACCUGGUGACAGGAUGCUAA-UCCC--A--AAA
GCCUCUCUCAGUUCGGAUCGAAGUCUGCAACCCGACUUCGUC-AAGCUGGAUUCGCUAGU
AAUCGCGC-AUCAGCCAUGGCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CAAGCCAUGAAAG-CCGGGGGU-ACCUGAAGUACGUAACC--------------------
----G-CA-A--------------------------GGAG----------CGUCCU-AGG
GUAAAACUGGUAAUUGGGGCUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AACACCUCCU------------
>Bartonella_henselae
---------UUCAAUAUGAGAGUUUGAUCCUG-GCUCAGAACGA-ACGCUGGCGGC-A-G
GC-UUAACACAUGCAAGUCGAGCGCAC----------------UCU------UU---U--
-------AGA---------------------GU-GAG-CGGCA-AACGGGUGAGUAACGC
GUGGGA-AU-CUACCCAUCUC---------------------UACGGA-AUAACAC--A-
G-AGAAA-UUUGUGCUAAUACCGUA-----------------------------------
------------------------------------------------------------
---------UACGU-CC-------------------------------------------
------------------------------------------------------------
----U-UA-G-------------GGA-GAAA-GA-----------------------U--
U-U-A--------------------UCGGAGAUGGAUGAGCCCGCG-UUGGAUUA-GCUA
--GUUGGUGAGGUAACGGCUCA-CCAAGGCGACGAUCCAU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGG-GCA----ACCCUGAUCCAGCCAUGCCGCGU--GAGUGAUGAAGG
CC--CU-AG--GGUU-GU-AAAG-CUCUUUCACCGGUGAAGA-------------UA---
A--------------UGACGGUAACCGGAG-AAGAAGCCCC-GGCUA-ACU-UCGUGCCA
GCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAUUUACUGGGCGUAAAGCGCAU
GUAGGCGGAUAUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGAGGUGAAAUCCCAGGGCUCAACC-
--------------------------------CUGG-AA-CUGCCUUUGAUACUGGGU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AUCUU--GAGUGUGGAA
G-AGGUGAGUGGAA-UUCCGAGUGUAGAGGUAAAAUUCGUAGAUAUUCGGAGGAACACCA
GUGGCGAAGGCGGCUCACUGGUCCAUUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-AUGUUAGCCGUCGGGCG
G-----------------------------------------------------------
----UUUA----------------------------------------------------
----------------------CUGCUCGGU-GGCGCAGCUAACGC-GUUAAACA-----
-------UUCC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAA-CCUU-
A-CCA-GCCCUUGACAUCCCG-A--UCG-CGGAAGGUG--GAGA---CACCCU-CCUUC-
----AG-UUAGGCU----GGAUCGG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGCCC-UUAGUUGCC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-UG--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAGGGGGACU-GCCG-G----UGA-UAAGC-CGAGAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-ACGGGCUGGGCUACACACGUGCUAC
AAUG-GUGGUGACAGUGGGC----------------------------------------
----------------------A-GCGAGACCGCGAGGUCGAGCUAA-UCUC--C--AAA
AGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUG-AAGUCGGAAUCGCUAGU
AAUCGUGG-AUCAGC-AUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGUUUU-ACCCGAAGGUGCUGUGCUAACC---------------
----G-CA-A----------------------GGGGGCAG----------GCAACC-ACG
GUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGUGGCUGG
AUCACCUCCUUUCU--------
>Bifidobacterium_longum
-------------UGUGGAGGGUUCGAUUCUG-GCUCAGGAUGA-ACGCUGGCGGC-G-U
GC-UUAACACAUGCAAGUCGAACGGGA-UCC---------AUCAGG------CU---UUG
-------CUUGGU------------G-GU--GA-GAG-UGGCG-AACGGGUGAGUAAUGC
GUGACCGAC-CUGCCCCAUAC---------------------ACCGGA-AUAGCUC--C-
U-GGAAA-CGGGUGGUAAUGCCGGA-----------------------------------
------------------------------------------------------------
---------UGCUCCAGUUG-A-UC-----------------------------------
------------------------------------------------------------
----G-CA-U---GGU--C-UUCUGG-GAAA-GC-----------------------U--
U-U-C--------------------GCGGUAUGGGAUGGGGUCGCG-UCCUAUCA-GCUU
--GACGGCGGGGUAACGGCCCA-CCGUGGCUUCGACGGGU-AGCCGGCCUGAGAGGGC-G
ACCGGCCACAUUGGGACUGAGAUACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GCA----AGCCUGAUGCAGCGACGCCGCGU--GAGGGAUGGAGG
CC--UU-CG--GGUU-GU-AAAC-CUCUUUUAUCGGGGAGCAAG-C---------GA--G
A-----------G--UGAGUUUACCCGUUG-AAUAAGCACC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGUGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGGGCUC
GUAGGCGGUUCGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CGCGUCCGGUGUGAAAGUCCAUCGCUUAACG-
--------------------------------GUGG-AU-CCGCGCCGGGUACGGGCG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GAGUGCGGUA
G-GGGAGACUGGAA-UUCCCGGUGUAACGGUGGAAUGUGUAGAUAUCGGGAAGAACACCA
AUGGCGAAGGCAGGUCUCUGGGCCGUUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGGUGG-AUGCUGGAUGUGGGGCC
C-----------------------------------------------------------
---GUUCCA---------------------------------------------------
---------------------CGGGUUCCGU-GUCGGAGCUAACGC-GUUAAGCA-----
-------UCCC-GCCUGGGGAGUACGG-CCGCAAGGC-UAAAACUCAAAGAAAUUGACGG
GGGCCCGC-ACAA-GCGGCGGAGCAUGCGGAUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-GGGCUUGACAUGUUCCC--G-A-CGGU-CGUA--GAGA---UGCG-G-CUUC--
----CC-UUCG-GG-----GCGGGU-UCACAGG-UGGUGCAUGGUCGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGCCC-CGUGUUGCC-A
GCGG--------------------------------------------------------
------------------------------------------------------------
------------A---U-UA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GC----------
--C-G---------GGAACUCACGGGGGACC-GCCG-G----GGU-UAACU-CG-GAGGA
AGGUGGGGAUGACGUCAGAUCAUC-AUGCCCCUU-ACGUCCAGGGCUUCACGCAUGCUAC
AAUG-GCCGGUACAACGGGA----------------------------------------
----------------------U-GCGACGCGGCGACGCGGAGCGGA-UCCC--U-GAAA
ACCGGUCUCAGUUCGGAUCGCAGUCUGCAACUCGACUGCGUG-AAGGCGGAGUCGCUAGU
AAUCGCGA-AUCAGCAACGUCGCGGUGAAUGCGUUCCCGGGCCUUGUACACACCGCCCGU
CAAGUCAUGAAAG-UGGGCAGC-ACCCGAAGCCGGUGGCCUAACCC--------------
----C-UU-GU--------------------GGGAUGGAG----------CCGUCU-AAG
GUGAGGCUCGUGAUUGGGACUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUUCU--------
>Blochmannia_floridanus
----GGAAUUAAAAUUGAAGAGUUUGAUCAUG-GCUCAGAUUGA-ACGCUGACGGU-A-A
GC-UUAACACAUGCAAGUCGAGCGGCAAACAG-----GAAAUUUAAUACC--UU---UUA
-------UUUUGU------------C-UG--GC-AAG-CGGCA-AACGGGUGAGUAAAGU
CUGGGG-AU-CUGCCCAAGGG---------------------AGGGGG-AUAACUA--U-
U-GGAAA-CGAUAGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UGAAA-UC-------------------------------------------
------------------------------------------------------------
----GAUG-A-------------GAU-UAAA-GUAGGGGACUUGUAUAUAAUGUU--U--
U-A---UUUAUUAUAUGUAGGCCUUAUGCCAUUGGAUGAACCCAGA-UAGGAUUA-GCUA
--GUAGGUAAGGUAACGGCUUA-CCUAGGCAACGAUCCUU-AGCUGGUCUGAGAGGAC-G
AUCAGCCACACUGGAACUGAGAUACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGG-GAA----ACCCUGAUGCAGCUAUACCGUGU--GUGUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CACUUUCAAUGGGGAAGAAUUUAAGGUUG--CUAAU
A-U-CAAUUU-UAAUUGACGUUACCCAUAU-AAGAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGAGUUC
GUAGGCGGUUUAU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGAUGUGAAAUCCCUGAGCUUAACU-
--------------------------------UAGG-AA-CUGCAUUUGAAACUGAUA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUA--GAGUUUCGUA
G-AGGGAGGUAGAA-UUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCG
GUGGCGAAGGCGGCCUCCUGGACGAAAACUGACGCUCAGGUACGAAAGCAUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCAUGCCGUAAACGAUGU-CGAUUUGAAGGUUGUGA
C-----------------------------------------------------------
---CAUUG----------------------------------------------------
---------------------AGUCGUGGCU-UUCGGAGCUAACGC-GUUAAAUC-----
-------GACC-GCCUGGGGAGUACGA-CCGCAAGGU-UAAAACUCAAAUGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUAUGGUUUAAUUCGAUGCAACACGAAGAA-CCUU-
A-CCU-ACUCUUGACAUCCAA-A--G-A-ACUG-UGUA--GAGA---UAUG-C-AGGUG-
----CC-UUCG-GG----AACUUUG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UU-GUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UAUCC-UUUGUUGCC-A
ACGA--------------------------------------------------------
------------------------------------------------------------
------------G---U-UA--A-------------------------------------
------------------------------------------------------------
------------------------------------------------GU----------
--C-G---------GGAACUCAAAGGAGACU-GCCG-G----UGA-UAAAC-CG-GAGGA
AGGUGAGGAUGACGUCAAGUCAUC-AUGGCCCUU-AUGAGUAGGGCUACAAACGUGCUAC
AAUG-GCGUAUACAAAGAGA----------------------------------------
----------------------A-GCGACCUUGCGAAAGUUAGCAAA-UCUC--A-UAAA
GUACGUCUUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGUGA-AUCAGA-AUGUCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUGC-AAAAGAAGUGAGUAGUUUAACCUU-------------
----G-AA-A-A-------------------AGGAGGGCG----------CUUACC-ACU
UUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGG
AUCACCUCCUUACUUUUA----
>Bradyrhizobium_japonicum
----------CCAACUUGAGAGUUUGAUCCUG-GCUCAGAGCGA-ACGCUGGCGGC-A-G
GC-UUAACACAUGCAAGUCGAGCGGGC----------------GUA------GC---A-A
-------UAC---------------------GU-CAG-CGGCA-GACGGGUGAGUAACGC
GUGGGA-AC-GUACCUUUUGG---------------------UUCGGA-ACAACAC--A-
G-GGAAA-CUUGUGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UAAGC-CC-------------------------------------------
------------------------------------------------------------
----U-UA-C-------------GGG-GAAA-GA-----------------------U--
U-U-A--------------------UCGCCGAAAGAUCGGCCCGCG-UCUGAUUA-GCUA
--GUUGGUAGGGUAACGGCCUA-CCAAGGCGACGAUCAGU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGG-GCA----ACCCUGAUCCAGCCAUGCCGCGU--GAGUGAUGAAGG
CC--CU-AG--GGUU-GU-AAAG-CUCUUUUGUGCGGGAAGA-------------UA---
A--------------UGACGGUACCGCAAG-AAUAAGCCCC-GGCUA-ACU-UCGUGCCA
GCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGUGC
GUAGGCGGGUCUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGGGGUGAAAUCCUGGAGCUCAACU-
--------------------------------CCAG-AA-CUGCCUUUGAUACUGAAG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AUCUU--GAGUUCGGGA
G-AGGUGAGUGGAA-CUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCA
GUGGCGAAGGCGGCUCACUGGCCCGAUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-AUGCCAGCCGUUAGUGG
G-----------------------------------------------------------
----UUUA----------------------------------------------------
----------------------CUCACUAGU-GGCGCAGCUAACGC-UUUAAGCA-----
-------UUCC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAA-CCUU-
A-CCA-GCCCUUGACAUGUCC-A--GGACCGGU-CGCA--GAGA---UGUG-A-CCUUC-
----UC-UUCG-GA----GCCUGGA-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-CGUCC-UUAGUUGCU-A
CCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-UA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------AGCACUCUAAGGAGACU-GCCG-G----UGA-UAAGC-CGCGAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-ACGGGCUGGGCUACACACGUGCUAC
AAUG-GCGGUGACAAUGGGA----------------------------------------
----------------------U-GCUAAGGGGCGACCCUUCGCAAA-UCUC--A--AAA
AGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUG-AAGUUGGAAUCGCUAGU
AAUCGUGG-AUCAGC-ACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGCUUU-ACCUGAAGACGGUGCGCUAACCA--------------
----G-CA-A---------------------UGGAGGCAG----------CCGGCC-ACG
GUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUUU----------
>Buchnera_aphidicola
------------------AGAGUUUGAUCAUG-GCUCAGAUUGA-ACGCUGGCGGC-A-A
GC-CUAACACAUGCAAGUCGAGCGGCAGCGA-------GAAGAGAG------CU---U-G
-------CUCUCUUU-------G--U-CG--GC-AAG-CGGCA-AACGGGUGAGUAAUAU
CUGGGG-AU-CUACCCAAAAG---------------------AGGGGG-AUAACUA--C-
U-AGAAA-UGGUAGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UAAUG-UU-------------------------------------------
------------------------------------------------------------
----G-AA-A-------------AAC-CAAA-GUGGGGGACCU--------------U--
U---U--------------GGCCUCAUGCUUUUGGAUGAACCCAGA-CGAGAUUA-GCUU
--GUUGGUAGAGUAAUAGCCUA-CCAAGGCAACGAUCUCU-AGCUGGUCUGAGAGGAU-A
ACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GAA----AGCCUGAUGCAGCUAUGCCGCGU--GUAUGAAGAAGG
CC--UU-AG--GGUU-GU-AAAG-UACUUUCAGCGGGGAGGAAAAAAAUAAAA--CUAAU
A-A-UUUUAU-UUCGUGACGUUACCCGCAG-AAGAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCAGAAUUACUGGGCGUAAAGAGCGC
GUAGGUGGUUUUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGGUGUGAAAUCCCUAGGCUCAACC-
--------------------------------UAGG-AA-CUGCAUUUGAAACUGGAA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AACUA--GAGUUUCGUA
G-AGGGAGGUAGAA-UUCUAGGUGUAGCGGUGAAAUGCGUAGAUAUCUGGAGGAAUACCC
GUGGCGAAAGCGGCCUCCUAAACGAAAACUGACACUGAGGCGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCAUGCCGUAAACGAUGU-CGACUUGGAGGUUGUUU
C-----------------------------------------------------------
---CAAGA----------------------------------------------------
----------------------GAAGUGACU-UCCGAAGCUAACGC-AUUAAGUC-----
-------GACC-GCCUGGGGAGUACGG-CCGCAAGGC-UAAAACUCAAAUGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAAAA-CCUU-
A-CCU-GGUCUUGACAUCCAC-A--G-A-AUUC-UUUA--GAAA---UAAA-G-AAGUG-
----CC-UUCG-GG----AGCUGUG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UU-GUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UAUCC-CCUGUUGCC-A
GCGG--------------------------------------------------------
------------------------------------------------------------
------------U---U-CG--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------C----------
--C-G---------GGAACUCAGAGGAGACU-GCCG-G----UUA-UAAAC-CG-GAGGA
AGGUGGGGACGACGUCAAGUCAUC-AUGGCCCUU-ACGACCAGGGCUACACACGUGCUAC
AAUG-GUUUAUACAAAGAGA----------------------------------------
----------------------A-GCAAAUCUGCAAAGACAAGCAAA-CCUC--A-UAAA
GUAAAUCGUAGUCCGGACUGGAGUCUGCAACUCGACUCCACG-AAGUCGGAAUCGCUAGU
AAUCGUGG-AUCAGA-AUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUGC-AAAAGAAGCAGGUAUCCUAACCCU-------------
----U-UA-A-A-------------------AGGAAGGCG----------CUUACC-ACU
UUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGG
AUCACCUCCUU-----------
>Burkholderia_sp.
------------------AGAGUUUGAUCCUG-GCUCAGAUUGA-ACGCUGGCGGC-A-U
GC-CUUACACAUGCAAGUCGAACGGCAGCAC----------GGGUG------CU---U-G
-------CACCU----------G--G-UG--GC-GAG-UGGCG-AACGGGUGAGUAAUAC
AUCGGA-AC-AUGUCCUGUAG---------------------UGGGGG-AUAGCCC--G-
G-CGAAA-GCCGGAUUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UACGA-UC-------------------------------------------
------------------------------------------------------------
----U-AC-G-------------GAU-GAAA-GCGGGGGACC---------------U--
U-C-G--------------GGCCUCGCGCUAUAGGGUUGGCCGAUG-GCUGAUUA-GCUA
--GUUGGUGGGGUAAAGGCCUA-CCAAGGCGACGAUCAGU-AGCUGGUCUGAGAGGAC-G
ACCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUGGACAAUGGGC-GAA----AGCCUGAUCCAGCAAUGCCGCGU--GUGUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CACUUUUGUCCGGAAAGAAAUCCUUGGCU--CUAAU
A-C-AGUCGG-GGGAUGACGGUACCGGAAG-AAUAAGCACC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGUGC
GCAGGCGGUUUGC-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGACCGAUGUGAAAUCCCCGGGCUCAACC-
--------------------------------UGGG-AA-CUGCAUUGGUGACUGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GAGUAUGGCA
G-AGGGGGGUAGAA-UUCCACGUGUAGCAGUGAAAUGCGUAGAGAUGUGGAGGAAUACCG
AUGGCGAAGGCAGCCCCCUGGGCCAAUACUGACGCUCAUGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCCUAAACGAUGU-CAACUAGUUGUUGGGGA
U-----------------------------------------------------------
----UCAU----------------------------------------------------
----------------------UUCCUUAGU-AACGUAGCUAACGC-GUGAAGUU-----
-------GACC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GCGGUGGAUGAUGUGGAUUAAUUCGAUGCAACGCGAAAAA-CCUU-
A-CCU-ACCCUUGACAUGGUC-G--G-A-AUCC-CGCU--GAGA---GGUG-G-GAGUGC
----UC-GAAA-GA---GAACCGGC-GCACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCC-UUAGUUGCU-A
-C----------------------------------------------------------
------------------------------------------------------------
----------------G-CA--A-------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----G---------AGCACUCUAAGGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-AUGGGUAGGGCUUCACACGUCAUAC
AAUG-GUCGGAACAGAGGGU----------------------------------------
----------------------U-GCCAACCCGCGAGGGGGAGCUAA-UCCC--A-GAAA
ACCGAUCGUAGUCCGGAUUGCACUCUGCAACUCGAGUGCAUG-AAGCUGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUUU-ACCAGAAGUGGCUAGUCUAACC---------------
----G-CA-A----------------------GGAGGACG----------GUCACC-ACG
GUAGGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG
AUCACCUCCUUUC---------
>Caulobacter_crescentus
-------------------GAGUUUGAUCCUG-GCUCAGAGCGA-ACGCUGGCGGC-A-G
GC-CUAACACAUGCAAGUCGAACGGAU-----------------CC------UU---C-G
-------GG----------------------AU-UAG-UGGCG-GACGGGUGAGUAACAC
GUGGGA-AC-GUGCCCUUUGG---------------------UUCGGA-ACAACUC--A-
G-GGAAA-CUUGAGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UGUGC-CC-------------------------------------------
------------------------------------------------------------
----U-UC-G-------------GGG-GAAA-GA-----------------------U--
U-U-A--------------------UCGCCAUUGGAGCGGCCCGCG-UCUGAUUA-GCUA
--GUUGGUGAGGUAAAGGCUCA-CCAAGGCGACGAUCAGU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGG-GAGGCAGCAGUGGGGAA
UCUUGCGCAAUGGGC-GAA----AGCCUGACGCAGCCAUGCCGCGU--GAAUGAUGAAGG
UC--UU-AG--GAUU-GU-AAAA-UUCUUUCACCGGGGACGA-------------UA---
A--------------UGACGGUACCCGGAG-AAGAAGCCCC-GGCUA-ACU-UCGUGCCA
GCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUUACUGGGCGUAAAGGGAGC
GUAGGCGGACUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UUAGUCAGAGGUGAAAGCCCAGGGCUCAACC-
--------------------------------UUGG-AA-UUGCCUUUGAUACUGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GUCUU--GAGUACGGAA
G-AGGUAUGUGGAA-CUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCA
GUGGCGAAGGCGACAUACUGGUCCGUUACUGACGCUGAGGCUCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-GUGCUAGUUGUCGGCAU
G-----------------------------------------------------------
---CAUG-----------------------------------------------------
----------------------CAUGUCGGU-GACGCAGCUAACGC-AUUAAGCA-----
-------CUCC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAA-CCUU-
A-CCA-CCUUUUGACAUGCCU-G--G-A-CCGC-CACA--GAGA---UGUG-G-UUUUC-
----CC-UUCG-GG----GACUGGG-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUGA-UUAGUUGCC-A
UCAG--------------------------------------------------------
------------------------------------------------------------
---------------GU-UU--GG------------------------------------
------------------------------------------------------------
-------------------------------------------------C----------
--U-G---------GGCACUCUAAUCAUACU-GCCG-G----AGU-UAAUC-CG-GAGGA
AGGCGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-ACAAGGUGGGCUACACACGUGCUAC
AAUG-GCGACUACAGAGGGC----------------------------------------
----------------------U-GCAAUCCCGCGAGGGGGAGCCAA-UCCC--U--AAA
AGUCGUCUCAGUUCGGAUUGUUCUCUGCAACUCGAGAGCAUG-AAGUUGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGCUUU-ACCCGAAGGCGCUGCGCUAACC---------------
----G-CA-A----------------------GGGGGCAG----------GCGACC-ACG
GUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCC-------------
>Chlamydophila_caviae
---------------CUGAGAAUUUGAUCUUG-GUUCAGAUUGA-ACGCUGGCGGC-G-U
GG-AUGAGGCAUGCAAGUCGAACGGAA-UAA-----------UAGC------UU---C-G
-------GUUA--------------U-UA--UU-UAG-UGGCG-GAAGGGUUAGUAAUAC
AUAGAUAAU-CUGUCCUCAAC---------------------UUGGGA-AUAACGG--U-
U-GGAAA-CGACCGCUAAUACCGAA-----------------------------------
------------------------------------------------------------
---------UGUGGUAUGUU-U-AG-----------------------------------
------------------------------------------------------------
----G-CA-U---CUA-AA-ACAUAU-UAAA-GAAGGGGAUC---------------U--
U-C-G--------------GACCUUUCGGUUAAGGAAGAGUCUAUG-GGAUAUCA-GCUU
--GUUGGUGGGGUAAUGGCCUA-CCAAGGCUUUGACGUCU-AGGCGGAUUGAGAGAUU-G
ACCGCCAACACUGGGACUGAGACACUGCCCAGACUUCUACGG-AAGGCUGCAGUCGAGAA
UCUUUCGCAAUGGAC-GAA----AGUCUGACGAAGCGACGCCGCGU--GUGUGAUGAAGG
CU--CU-AG--GGUU-GU-AAAG-CACUUUCGCUUGGGAAUAAGAGAAGUUGG--CUAAU
A-U-CCAACU-GAUUUGAGCGUACCAGGUA-AAGAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCUGCGGUAAUACGGAGGGUGCUAGCGUUAAUCGGAUUUAUUGGGCGUAAAGGGCGU
GUAGGCGGAAAGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------AAAGUUAGAUGUUAAAUCUUGGGGCUCAACC-
--------------------------------CCAA-GC-CAGCAUCUAAUACUAUCU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------UUCUA--GAGGGUAGAU
G-GAGAAAAGGGAA-UUCCACGUGUAGCGGUGAAAUGCGUAGAUAUGUGGAAGAACACCA
GUGGCGAAGGCGCUUUUCUAAUUUACACCUGACGCUAAGGCGCGAAAGCAAGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCUUGCCGUAAACGAUGC-AUACUUGAUGUGGAUAG
U-----------------------------------------------------------
---CUCAAC---------------------------------------------------
----------------------CCUAUCCGU-GUCGUAGCUAACGC-GUUAAGUA-----
-------UGCC-GCCUGAGGAGUACAC-UCGCAAGGG-UGAAACUCAAAAGAAUUGACGG
GGGCCCGC-ACAA-GCAGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-GGGCUUGACAUGUAUUU--G-A-CCGC-GGCA--GAAA---UGUC-G-UUUU--
----CC-GCAA-GG-----ACAGAU-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
CC-GUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UAUCG-UUAGUUGCC-A
ACAC--------------------------------------------------------
------------------------------------------------------------
------------U---U-AG--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------G----------
--U-G---------GGAACUCUAACGAGACU-GCCU-G----GGU-UAACC-AG-GAGGA
AGGCGAGGAUGACGUCAAGUCAGC-AUGGCCCUU-AUGCCCAGGGCCACACACGUGCUAC
AAUG-GCCAGUACAGAAGGU----------------------------------------
----------------------A-GCAAUAUCGCAAGAUGGAGCAAA-UCCU--C--AAA
GCUGGCCCCAGUUCGGAUUGUAGUCUGCAACUCGACUACAUG-AAGUCGGAAUUGCUAGU
AAUGGCGU-GUCAGCUAUAACGCCGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACAUCAUGGGAG-UUGGUUUU-GCCUUAAGUCGUUGACUCAACCU--------------
----G-CA-A---------------------AGGAGAGAG----------GCGCCC-AAG
GUGAGGCUGAUGACUGGGAUGAAGUCGUAACAAGGUAGCCCUACCGGAAGGUGGGGCUGG
AUCACCUCCUUU----------
>Chlorobium_tepidum
-----------ACAACGGAGAGUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-CUAACACAUGCAAGUCAAAGUUUGAGUA-------------AC------UU---C-G
-------GU----------------U-AC-AAA-GACUUGGCG-CAAGGGUGAGUAAGGC
AUAGGUAAU-CUGCCUUUUGG---------------------UCUGGG-AUAACCC--C-
G-AGAAA-UCGGGAACAAUACCAGA-----------------------------------
------------------------------------------------------------
---------UGAUGCAGCGGAA-UC-----------------------------------
------------------------------------------------------------
----G-CA-U---GGU-UA-UGUUGU-UAAA-GA-----------------------U--
U-U-A--------------------UCGCCAAAAGAUGAGCCUAUG-UUCCAUCA-GGUA
--GUUGGUAGGGUAACGGCCUA-CCAAGCCUACGACGGAU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACAUUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGAGGAA
UAUUGCGCAAUGGGC-GAA----AGCCUGACGCAGCAACGCCGCGU--GGAUGAUGAAGU
UC--UU-CG--GAAU-GU-AAAA-UCCUUUUGCAGGAGACGAAGAGGUCGG----CU--U
G------CCG-GCUGUGACGGUACCCUGCG-AAUAAGCCAC-GGCUA-ACU-CUGUGCCA
GCAGCCGCGGUGAUACAGGGGUGGCAAGCGUUGUCCGGAUUUACUGGGUGUAAAGGGUGC
GCAGGCGGAUCGA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCGGGGGUUAAAUCCAUGUGCUUAACA-
--------------------------------CAUG-CA-CGGCUUCCGAUACUGUUG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AUCUA--GAGUCUCGAA
G-AGGAAGGUGGAA-UUUCCGGUGUAACGGUGGAAUGUGUAGAUAUCGGAAAGAACACCA
GUGGCGAAGGCAGCCUUCUGGUCGAGUACUGACGCUCAGGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-AUACUAGAUGUUGGUCA
------------------------------------------------------------
----UAG-----------------------------------------------------
-----------------------UGAUCAGU-GUCGCAGCUAACGC-GUUAAGUA-----
-------UUCC-ACCUGGGAAGUACGC-CCGCAAGGG-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAUCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-AGGCUUGAUAUUACAGC--U-A-AACC-UCCU--GAAA---GGGA-G-GGU---
----CC-UUCG-GG-----GAGCUG-UAACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-UACAA-UUAGUUACC-A
UCAG--------------------------------------------------------
------------------------------------------------------------
------------G---U-UA--A-------------------------------------
------------------------------------------------------------
------------------------------------------------GC----------
--U-G---------GGGACUCUAAUUGAACU-GCCU-A----CG--CAAGU-AGAGAGGA
GGGAGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-ACGCCUAGGGCCACACACGUGAUAC
AAUG-GCGACUACAGAGGGC----------------------------------------
----------------------A---AA-GCCGCAAGGCAGAGGGAA-UCCC--A-AAAA
AGUCGUCUCAGUCCGGAUCGGAGUCUGCAACUCGACUCCGUG-AAGUUGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUGUGUUCCCGGGCCUUGUACACACCGCCCGU
CAAGUCAUGGAAG-UCAGGAGU-ACCCAAAGACGC-------------------------
----U-CG-C----------------------------------------GCGUUU-AAG
GUAAGACUGGUAACUGGGACUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUU----------
>Coxiella_burnetii
-------------AUUGAAGAGUUUGAUUCUG-GCUCAGAUUGA-ACGCUAGCGGC-A-U
GC-UUAACACAUGCAAGUCGAACGGCAGCGC---------GGGGAG------CU---U-G
-------CUCCCU---------G--G-CG--GC-GAG-UGGCG-GACGGGUGAGUAAUGC
GUAGGA-AU-CUACCUUGUAG---------------------UGGGGG-AUAACCU--G-
G-GGAAA-CUCGGGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UAAUC-UC-------------------------------------------
------------------------------------------------------------
----U-UU-G-------------GAG-CAAA-GCGGGGGAUC---------------U--
U-C-G--------------GACCUCGUGCUAUAAGAUGAGCCUACG-UCGGAUUA-GCUU
--GUUGGUGGGGUAAUGGCCUA-CCAAGGCGACGAUCCGU-AGCUGGUCUGAGAGGAC-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGG-GAA----ACCCUGAUCCAGCAAUGCCGCGU--GUGUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CACUUUCGGUGGGGAAGAAAUUCUCAAGG--GUAAU
A-U-CCUUGG-GCGUUGACGUUACCCACAG-AAGAAGCACU-GGCUA-ACU-CUGUGCCA
GCAGCCGCGGUAAUACAGAGAGUGCAAGCGUUAAUCGGAAUCACUGGGCGUAAAGCGCGC
GUAGGUGGAUAUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCGGAUGUGAAAGCCCUGGGCUUAACC-
--------------------------------UGGG-AA-UUGCACCCGAUACUGGGU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AUCUU--GAGUAUGGUA
G-AGGGAAGUGGAA-UUUCCGGUGUAGCGGUGAAAUGCGUAGAUAUCGGAAAGAACACCA
GUGGCGAAGGCGACUUCCUGGACCAAUACUGACACUGAGGCGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAGACCCUG-GUAGUCCACGCCGUCAACGAUGA-GAACUAGCUGUUGGGAA
G-----------------------------------------------------------
----UUCA----------------------------------------------------
----------------------CUUCUUAGU-AGCGAAGCUAACGC-GUUAAGUU-----
-------CUCC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAGAAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAAAA-CCUU-
A-CCU-ACCCUUGACAUCCUC-G--G-A-ACUU-GUCA--GAGA---UGAU-U-UGGUG-
----CC-UUCG-GG----AACCGAG-UGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGUAACGAGCGCAACCCU-CGUCC-UUAGUUGCC-A
GCGA--------------------------------------------------------
------------------------------------------------------------
------------G---U-CA--A-------------------------------------
------------------------------------------------------------
------------------------------------------------GU----------
--C-G---------GGAACUCUAAGGAGACU-GCCG-G----UGA-UAAAC-CG-GAGGA
AGGUGGGGAUGAUGUCAAGUCAUC-AUGGCCCUU-ACGGGUAGGGCUACACACGUGCUAC
AAUG-GGCAGUACAAAGGGU----------------------------------------
----------------------U-GCCAAGCCGCGAGGUGGAGCUAA-UCCC--A-GAAA
ACUGCUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUUGGAAUCGCUAGU
AAUCGCGA-AUCAGC-AUGUCGCGGUGAAUACGUUCUCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGAAUUGU-ACCAGAAGCGGGUAGGCUAACC---------------
----U-UC-G----------------------GGAGGCCG----------CUCACC-ACG
GUAUGAUCCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUUACU--------
>Crocosphaera_watsonii
--------AACACCAUGGAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUGGCGGU-A-U
GC-CUAACACAUGCAAGUCGAACGAAG-----------------UC------UU---C-G
-------GA----------------------CU-UAG-UGGCG-GACGGGUGAGUAACGC
GUGAGA-AU-CUGCCUUGAGG---------------------AUGGGG-ACAACAG--U-
U-GGAAA-CGACUGCUAAUACCCGA-----------------------------------
------------------------------------------------------------
---------UGU-G-CC-------------------------------------------
------------------------------------------------------------
----G-GA-A-------------GGU-GAAA-AU-----------------------U--
U-U----------------------UUGCCUCAAGAGGAGCUCGCG-UCUGAUUA-GCUA
--GUUGGUGGGGUAAAAGCGUA-CCAAGGCAACGAUCAGU-AGCUGGUCUGAGAGGAU-G
AGCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUCCGCAAUGGGC-GAA----AGCCUGACGGAGCAAUACCGCGU--GAGGGAGGAAGG
CC--UU-UG--GGUU-GU-AAAC-CUCUUUUCUCAGGGAAGA-------------AGA-U
C--------------UGACGGUACCUGAGG-AAUAAGCAUC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGAUGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGUCC
GCAGGUGGUCUUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCUGCUGUCAAAGACCAGAGCUUAACU-
--------------------------------CUGG-GC-AGGCGGUGGAAACUGAGA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUA--GAGUUCGGUA
G-GGGUAGCGGGAA-UUCCCAGUGUAGCGGUGAAAUGCGUAGAUAUUGGGAAGAACAUCG
GUGGCGAAGGCGUGCUACUGGACCGAAACUGACACUCAGGGACGAAAGCUAGGGUAGCGA
AAGGGAUUAGAUACCCCU-GUAGUCCUAGCUGUAAACGAUGG-AAACUAGGUGUGGCUUG
U-----------------------------------------------------------
---AUCGAC---------------------------------------------------
----------------------CCGAGCCGU-GCCGUAGCCAACGC-GUUAAGUU-----
-------UCCC-GCCUGGGGAGUACGC-ACGCAAGUG-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGUAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCA-GGGCUUGACAUGUCC-G--G-A-ACUU-UUCU--GAAA---GGAG-A-AGGUG-
----CC-UUCG-GG----AACCGGA-ACACAGG-UGGUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUCU-UUAGUUGCC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------G----------
--U-G---------GGCACUCUAGAGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGAGGAUGACGUCAAGUCAGC-AUGCCCCUU-ACGCCCUGGGCUACACACGUACUAC
AAUG-GUUGGGACAAAGGGC----------------------------------------
----------------------A-GCGAACCCGCGAGGGAGAGCGAA-UCUC--AUCAAA
CCCAGCCUCAGUUCAGAUUGCUCUCUGCAACUCGAGAGCAUG-AAGGAGGAAUCGCUAGU
AAUCGCAG-GUCAGC-AUACUGCGGUGAAUUCGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGAAG-CUGGUCAC-GCCCGAAGUAGUUACCCUAACU---------------
----U-UC-G----------------------GGAGGGGG----------ACUCCU-AAG
GCAGGGCUAGUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGUGGCUGG
AUCACCUCCUU-----------
>Cytophaga_hutchinsonii
---------UUACAAUGGAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUAGCGGC-A-G
GC-CUAAUACAUGCAAGUCGAGGGGCAGCGG----------GG-UA------GC---A-A
-------UA-CU----------G--C-CG--GC-GAC-CGGCG-CACGGGUGCGUAACAC
GUAUGCAAC-CUACCUUAAAC---------------------UGGGAG-AUAGCCC--G-
G-GGAAA-CUCGGAUUAAUACCCCA-----------------------------------
------------------------------------------------------------
---------UAACACAUUUGUG-UC-----------------------------------
------------------------------------------------------------
----U-CA-U---GAC-AU-GAUUGU-UAAA-GA-----------------------U--
U-U-A--------------------UCGGUUUAAGAUGGGCAUGCG-UUCGAUUA-GCUA
--GUUGGUGAGGUAAUGGCUCA-CCAAGGCUACGAUCGAU-AGGGGGUCUGAGAGGAU-G
AUCCCCCACACUGGUACUGAGAUACGGACCAGACUCCUACGG-GAGGCAGCAGUAGGGAA
UAUUGGUCAAUGGAG-GCA----ACUCUGAACCAGCCAUGCCGCGU--GUAGGAAGAAGG
CGU-UC-UG--CGUU-GU-AAAC-UACUUUUGAUUGGGAACAAAUGACUCU----UG--C
G-----AGAG-UAGCUGAGUGUACCAAUAG-AAUAAGCCAC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUGUCCGGAUUUAUUGGGUUUAAAGGGUGC
GUAGGCGGCUUAA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGUGGUGAAAGCCGAUCGCUUAACG-
--------------------------------AUCG-AA-CUGCCAUUGAUACUGCUA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GAGUAUAGAU
G-AGGUAGGCGGAA-UUGACAGUGUAGCGGUGAAAUGCAUAGAUAUUGUCAAGAACACCA
AUUGCGAAGGCAGCUUACUAAGUUAUAACUGACGCUGAGGCACGAAAGUGCGGGGAUCAA
ACAGGAUUAGAUACCCUG-GUAGUCCGCACCGUAAACGAUGA-UCACUCGCUGUGUGCGA
------------------------------------------------------------
----UAAA----------------------------------------------------
-----------------------CAGUACGC-GGCCAAGCGAAAGC-GAUAAGUG-----
-------AUCC-ACCUGGGGAGUACGC-CCGCAAGGG-UGAAACUCAAAGGAAUUGACGG
GGGUCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGAUACGCGAGGAA-CCUU-
A-CCU-AGGCUAGAAUGUGAA-G--G-A-AUGU-AUCA--GAAA---UGGU-G-CAGU--
----CA-GCAA-UG-----ACCUGA-AACAAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
CC-GUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-UAUCU-UUAGUUGCC-A
GCGA--------------------------------------------------------
------------------------------------------------------------
------------G---U-UA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GU----------
--C-G---------GGGACUCUAGAGAGACU-GCCU-G----UG--UAAAC-AGAGAGGA
AGGAGGGGACGACGUCAAGUCAUC-AUGGCCCUU-ACGCCUAGGGCUACACACGUGCUAC
AAUG-GCGCAUACAGAGUGU----------------------------------------
----------------------U-GCAAGCUAGUGAUAGCAAGCCAA-UCAC--A-AAAA
GUGCGUCUCAGUUCGGAUUGAAGUCUGCAACUCGACUUCAUG-AAGCUGGAAUCGCUAGU
AAUCGCGU-AUCAGCAAUGACGCGGUGAAUACGUUCCCGGACCUUGUACACACCGCCCGU
CAAGCCAUGAAAG-UCUGGUGG-ACCUGAAGGCCGUAACC--------------------
----G-CA-A--------------------------GGAG----------CGGCUC-AGG
GUAAAACAGGUAAUUAGGGCUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AACACCUCCUUUCU--------
>Dechloromonas_aromatica
------------------AGAGUUUGAUCCUG-GCUCAGAUUGA-ACGCUGGCGGC-A-U
GC-CUUACACAUGCAAGUCGAACGGCAGCAC-----------GGGA------GC---A-A
-------UCCU-----------G--G-UG--GC-GAG-UGGCG-AACGGGUGAGUAAUAU
AUCGGA-AC-GUACCUUUCAG---------------------UGGGGG-AUAACGU--A-
G-CGAAA-GUUACGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UAUUC-UG-------------------------------------------
------------------------------------------------------------
----U-GA-G-------------CAG-GAAA-GCAGGGGAUC---------------G--
C-A-A--------------GACCUUGCGCUGAUUGAGCGGCCGAUA-UCAGAUUA-GCUA
--GUUGGUGAGGUAAAGGCUCA-CCAAGGCGACGAUCUGU-AGCGGGUCUGAGAGGAU-G
AUCCGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUGGACAAUGGGG-GCA----ACCCUGAUCCAGCCAUGCCGCGU--GAGUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CUCUUUCAGCCGGGAAGAAAACGCAUGGG--UUAAU
A-C-CCUGUG-UGGAUGACGGUACCGGAAU-AAGAAGCACC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGUGC
GCAGGCGGUUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGAUAGGCGUGAAAUCCCCGGGCUCAACC-
--------------------------------UGGG-AA-CUGCGUUUAUGACUGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GAGUAUGGCA
G-AGGGGGGUGGAA-UUCCACGUGUAGCAGUGAAAUGCGUAGAGAUGUGGAGGAACACCG
AUGGCGAAGGCAGCCCCCUGGGCCAAUACUGACGCUCAUGCACGAAAGCGUGGGUAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCCUAAACGAUGU-CAACUAGGUGUUGGGAG
G-----------------------------------------------------------
---GUAAA----------------------------------------------------
---------------------ACCUUUUAGU-ACCGGAGCUAACGC-GUGAAGUU-----
-------GACC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GCGGUGGAUGAUGUGGAUUAAUUCGAUGCAACGCGAAAAA-CCUU-
A-CCU-ACCCUUGACAUGUCC-G--G-A-AGCC-CUUA--GAGA---UUUG-G-GUGUGC
----UC-GAAA-GA---GAGCCGGA-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCG-UUAAUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-UA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUUUAACGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-AUGGGUAGGGCUUCACACGUCAUAC
AAUG-GUCGGUACAAAGGGU----------------------------------------
----------------------U-GCCAACCCGCGAGGGGGAGCUAA-UCCC--A-GAAA
GCCGAUCGUAGUCCGGAUCGUAGGCUGCAACUCGCCUGCGUG-AAGUCGGAAUCGCUAGU
AAUCGUGG-AUCAGC-AUGUCACGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGU
CACACCAUGGGAG-CGGGUUCC-GCCAGAAGUAGGUAGCCUAACC---------------
----G-CA-A----------------------GGGGGGCG----------CUUACC-ACG
GCGGGGUUCGUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUU-----------
>Dehalococcoides_ethenogenes
-----------AGCUUGGAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUAGCGGC-G-U
GC-CUUAUGCAUGCAAGUCGAACGGUC-U--------------UAA------GC---A-A
-------UUA------------------A--GA-UAG-UGGCA-AACGGGUGAGUAACGC
GUAAGUAAC-CUACCUCUAAG---------------------UGGGGG-AUAGCUU--C-
G-GGAAA-CUGAAGGUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UGUGAUGGGCU-G-AC-----------------------------------
------------------------------------------------------------
----A-UA-A---GUC--G-GUUCAU-UAAA-GCC----------------------G--
C-A-A-------------------GGUGCUUGGUGAGGGGCUUGCG-UCCGAUUA-GCUA
--GUUGGUGGGGUAAUGGCCUA-CCAAGGCUUCGAUCGGU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGCAAGGAA
UCUUGGGCAAUGGGC-GAA----AGCCUGACCCAGCAACGCCGCGU--GAGGGAUGAAGG
CU--UU-CG--GGUU-GU-AAAC-CUCUUUUCACAGGGAAGA-------------AU--A
A--------------UGACGGUACCUGUGG-AAUAAGCUUC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGAAGCAAGCGUUAUCCGGAUUUAUUGGGCGUAAAGUGAGC
GUAGGUGGUCUUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUUGGAUGUGAAAUUUCCCGGCUUAACC-
--------------------------------GGGA-CG-UGUCAUUCAAUACUGUUG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUA--GAGUACAGCA
G-GAGAAAACGGAA-UUCCCGGUGUAGUGGUAAAAUGCGUAGAUAUCGGGAGGAACACCA
GAGGCGAAGGCGGUUUUCUAGGUUGUCACUGACACUGAGGCUCGAAAGCGUGGGGAGCGA
ACAGAAUUAGAUACUCUG-GUAGUCCACGCCUUAAACUAUGG-ACACUAGGUAUAGGGAG
U-----------------------------------------------------------
---AUCGAC---------------------------------------------------
----------------------CCUCUCUGU-GCCGAAGCUAACGC-UUUAAGUG-----
-------UCCC-GCCUGGGGAGUACGG-UCGCAAGGC-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCAGCGGAGCGUGUGGUUUAAUUCGAUGCUACACGAAGAA-CCUU-
A-CCA-AGAUUUGACAUGCAUGA--A-GUAGUG-AACC--GAAA---GGGA-A-ACGACC
U---GU-UAAG-UC---AGGAGUUU-GCACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
CC-GUGAGGUGUUUGGUUAAGUCCUGCAACGAGCGCAACCCU-UGUUG-CUAGUUA----
------------------------------------------------------------
------------------------------------------------------------
----------------A-AU----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--U-U--------------UCUAGCGAGACU-GCCC-C----GCG-AAACG-GG-GAGGA
AGGUGGGGAUGACGUCAAGUCAGC-AUGGCCUUU-AUAUCUUGGGCUACACACACGCUAC
AAUG-GACAGAACAAUAGGU----------------------------------------
----------------------U-GCAACAGUGUGAACUGGAGCUAA-UCCC--C--AAA
GCUGUCCUCAGUUCGGAUUGCAGGCUGAAACCCGCCUGCAUG-AAGUUGGAGUUGCUAGU
AACCGCAU-AUCAGC-AAGGUGCGGUGAAUACGUUCUCGGGCCUUGUACACACCGCCCGU
CACGUCAUGAAAG-CCGGUAAC-ACUUGAAGUCGAUGUGCCAACC---------------
----G-CA-A----------------------GGAGGCAG----------UCGCCG-AGG
GUGGGACUGGUAAUUGGGACGAAGUCGUAACAAGGUAGCCGUAGCGGAAGCUGCGGCUGG
AUCACCUCCUUU----------
>Deinococcus_radiodurans
-----------UUUAUGGAGAGUUUGAUCCUG-GCUCAGGGUGA-ACGCUGGCGGC-G-U
GC-UUAAGACAUGCAAGUCGAACGCGG-----------------UC------UU---C-G
-------GA----------------------CC-GAG-UGGCG-CACGGGUGAGUAACAC
GUAACUGAC-CUACCCAGAAG---------------------UCACGA-AUAACUG--G-
C-CGAAA-GGUCCGCUAAUACGUGA-----------------------------------
------------------------------------------------------------
---------UGUGGUGAUG--C-AC-----------------------------------
------------------------------------------------------------
----C-GU-G---GUG----CAUCAC-UAAA-GA-----------------------U--
U-U-A--------------------UCGCUUCUGGAUGGGGUUGCG-UUCCAUCA-GCUG
--GUUGGUGGGGUAAAGGCCUA-CCAAGGCGACGACGGAU-AGCCGGCCUGAGAGGGU-G
GCCGGCCACAGGGGCACUGAGACACGGGUCCCACUCCUACGG-GAGGCAGCAGUUAGGAA
UCUUCCACAAUGGGC-GCA----AGCCUGAUGGAGCGACGCCGCGU--GAGGGAUGAAGG
UU--UU-CG--GAUC-GU-AAAC-CUCUGAA-UCUGGGACGAAAGAGCC------UU--A
G-------GG-CAGAUGACGGUACCAGAGU-AAU-AGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUACCCGGAAUCACUGGGCGUAAAGGGCGU
GUAGGCGGAAAUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGGUUUUAAAGACCGGGGCUCAACC-
--------------------------------UCGG-GG-AUGGACUGGAUACUGGAU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------UUCUU--GACCUCUGGA
G-AGGUAACUGGAA-UUCCUGGUGUAGCGGUGGAAUGCGUAGAUACCAGGAGGAACACCA
AUGGCGAAGGCAAGUUACUGGACAGAAGGUGACGCUGAGGCGCGAAAGUGUGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCACACCCUAAACGAUGU-ACGUUGGCUAAGCGCAG
------------------------------------------------------------
----GAUG----------------------------------------------------
-----------------------CUGUGCUU-GGCGAAGCUAACGC-GAUAAACG-----
-------UACC-GCCUGGGAAGUACGG-CCGCAAGGU-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAA-CCUU-
A-CCA-GGUCUUGACAUGCUA-G--G-A-ACUU-UGCA--GAGA---UGCA-G-AGGUGC
----CC-UUCG-GG---GAACCUAG-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGCCU-UUAGUUGUC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-CA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GACACUCUAGAGGGACU-GCCU-A----UGA--AAGU-AG-GAGGA
AGGCGGGGAUGACGUCUAGUCAGC-AUGGUCCUU-ACGUCCUGGGCGACACACGUGCUAC
AAUG-GGUAGGACAACGCGC----------------------------------------
----------------------A-GCAAACCCGCGAGGGUAAGCGAA-UCGC--U-AAAA
CCUAUCCCCAGUUCAGAUCGGAGUCUGCAACUCGACUCCGUG-AAGUUGGAAUCGCUAGU
AAUCGCGG-GUCAGC-AUACCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UAGAUUGC-AGUUGAAACCGCCGGG-AG-CU---------------
----U-UG-C----------------------GG---CAG----------GCGUCU-AGA
CUGUGGUUUAUGACUGGGGUGAAGUCGUAACAAGGUAACUGUACCGGAAGGUGCGGUUGG
AUCACCUCCUUU----------
>Escherichia_coli
-----------AAAUUGAAGAGUUUGAUCAUG-GCUCAGAUUGA-ACGCUGGCGGC-A-G
GC-CUAACACAUGCAAGUCGAACGGUAACAGG--------AAGAAG------CU---U-G
-------CUUCUU--------UG--C-UG--AC-GAG-UGGCG-GACGGGUGAGUAAUGU
CUGGGA-AA-CUGCCUGAUGG---------------------AGGGGG-AUAACUA--C-
U-GGAAA-CGGUAGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UAACG-UC-------------------------------------------
------------------------------------------------------------
----G-CA-A-------------GAC-CAAA-GAGGGGGACC---------------U--
U-C-G--------------GGCCUCUUGCCAUCGGAUGUGCCCAGA-UGGGAUUA-GCUA
--GUAGGUGGGGUAACGGCUCA-CCUAGGCGACGAUCCCU-AGCUGGUCUGAGAGGAU-G
ACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GCA----AGCCUGAUGCAGCCAUGCCGCGU--GUAUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-UACUUUCAGCGGGGAGGAAGGGAGUAAAG--UUAAU
A-C-CUUUGC-UCAUUGACGUUACCCGCAG-AAGAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCAC
GCAGGCGGUUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGAUGUGAAAUCCCCGGGCUCAACC-
--------------------------------UGGG-AA-CUGCAUCUGAUACUGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUU--GAGUCUCGUA
G-AGGGGGGUAGAA-UUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCG
GUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGU-CGACUUGGAGGUUGUGC
C-----------------------------------------------------------
---CUUGA----------------------------------------------------
----------------------GGCGUGGCU-UCCGGAGCUAACGC-GUUAAGUC-----
-------GACC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAUGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-GGUCUUGACAUCCAC-G--G-A-AGUU-UUCA--GAGA---UGAG-A-AUGUG-
----CC-UUCG-GG----AACCGUG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UU-GUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UAUCC-UUUGUUGCC-A
GCGG--------------------------------------------------------
------------------------------------------------------------
----------------U-CC--G---G---------------------------------
------------------------------------------------------------
-------------------------------------------------C----------
--C-G---------GGAACUCAAAGGAGACU-GCCA-G----UGA-UAAAC-UG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGGCCCUU-ACGACCAGGGCUACACACGUGCUAC
AAUG-GCGCAUACAAAGAGA----------------------------------------
----------------------A-GCGACCUCGCGAGAGCAAGCGGA-CCUC--A-UAAA
GUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGUGG-AUCAGA-AUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUGC-AAAAGAAGUAGGUAGCUUAACC---------------
----U-UC-G----------------------GGAGGGCG----------CUUACC-ACU
UUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGG
AUCACCUCCUUA----------
>Fusobacterium_nucleatum
---------AUUGAACGAAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUGACAGA-A-U
GC-UUAACACAUGCAAGUCU-ACUUGA-AUU---------UGGGUU------UU---U-U
-------AACUUC------------G-AU--UU-GGG-UGGCG-GACGGGUGAGUAACGC
GUAAAGAAU-UUGCCUCACAG---------------------CUAGGG-ACAACAU--U-
U-GGAAA-CGAAUGCUAAUACCUGA-----------------------------------
------------------------------------------------------------
---------UAUUAUGAUUAUA-GG-----------------------------------
------------------------------------------------------------
----G-CA-U---CCU-AG-AAUUAU-GAAA-GCU----------------------A--
U-A---------------------UGCGCUGUGAGAGAGCUUUGCG-UCCCAUUA-GCUA
--GUUGGAGAGGUAACGGCUCA-CCAAGGCGAUGAUGGGU-AGCCGGCCUGAGAGGGU-G
AACGGCCACAAGGGGACUGAGACACGGCCCUUACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGACCGAG----AGUCUGAUCCAGCAAUUCUGUGU--GCACGAUGACGU
UU--UU-CG--GAAU-GU-AAAG-UGCUUUCAGUUGGGAAGAA------------AA--A
A-------------AUGACGGUACCAACAG-AAGAAGUGAC-GGCUA-AAU-ACGUGCCA
GCAGCCGCGGUAAUACGUAUGUCACGAGCGUUAUCCGGAUUUAUUGGGCGUAAAGCGCGU
CUAGGUGGUUAUG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGAUGUGAAAAUGCAGGGCUCAACU-
--------------------------------CUGU-AU--UGCGUUGGAAACUGUGU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AACUA--GAGUACUGGA
G-AGGUAAGCGGAA-CUACAAGUGUAGAGGUGAAAUUCGUAGAUAUUUGUAGGAAUGCCG
AUGGGGAAGCCAGCUUACUGGACAGAUACUGACGCUGAAGCGCGAAAGCGUGGGUAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-UUACUAGGUGUUGGGGG
------------------------------------------------------------
----UCGA----------------------------------------------------
-----------------------ACCUCAGC-GCCCAAGCAAACGC-GAUAAGUA-----
-------AUCC-GCCUGGGGAGUACGU-ACGCAAGUA-UGAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGAGGAA-CCUU-
A-CCA-GCGUUUGACAUCUUA-G--G-A-AUGA-GACA--GAGA---UGUU-U-CAGUGU
C---CC-UUCG-GG--GAAACCUAA-AGACAGG-UGGUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-UUUCG-UAUGUUACC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGGACUCAUGCGAUACU-GCCU-A----CGA-UGAGU-AG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGCCCCUU-AUACGCUGGGCUACACACGUGCUAC
AAUG-GGUAGAACAGAGAGU----------------------------------------
----------------------U-GCAAAGCCGUGAGGUGGAGCUAA-UCUC--A-GAAA
ACUAUUCUUAGUUCGGAUUGUACUCUGCAACUCGAGUACAUG-AAGUUGGAAUCGCUAGU
AAUCGCGA-AUCAGCAAUGUCGCGGUGAAUACGUUCUCGGGUCUUGUACACACCGCCCGU
CACACCACGAGAG-UUGGUUGC-ACCUGAAGUAGCAGGCCUAACC---------------
----G-UA-A----------------------GGAGGGAU----------GUUCCG-AGG
GUGUGAUUAGCGAUUGGGGUGAAGUCGUAACAAGGUAUCCGUACGGGAACGUGCGGUUGG
AUCACCUCCU------------
>Geobacillus_kaustophilus
----------------GGAGAGUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-CUAAUACAUGCAAGUCGAGCGGAC-CAA--------AUCGGAG------CU---U-G
-------CUCUGAU-----------U-UG--GU-CAG-CGGCG-GACGGGUGAGUAACAC
GUGGGCAAC-CUGCCCGCAAG---------------------ACCGGG-AUAACUC--C-
G-GGAAA-CCGGAGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UAACA-CCGAAGA-CC-----------------------------------
------------------------------------------------------------
----G-CA-U---GGU-CU-UUGGUU-GAAA-GGCGGCC------------------U--
U-U-G----------------GCUGUCACUUGCGGAUGGGCCCGCG-GCGCAUUA-GCUA
--GUUGGUGAGGUAACGGCUCA-CCAAGGCGACGAUGCGU-AGCCGGCCUGAGAGGGU-G
ACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUAGGGAA
UCUUCCGCAAUGGGC-GAA----AGCCUGACGGAGCGACGCCGCGU--GAGCGAAGAAGG
CC--UU-CG--GGUC-GU-AAAG-CUCUGUUGUGAGGGACGAAGGAGCGCCGUUCGAA-G
A--GGGCGGC-GCGGUGACGGUACCUCACG-AGGAAGCCCC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGGGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGCGCGC
GCAGGCGGUUCCU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGAUGUGAAAGCCCACGGCUCAACC-
--------------------------------GUGG-AG-GGUCAUUGGAAACUGGGG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GAGUGCAGGA
G-AGGAGAGCGGAA-UUCCACGUGUAGCGGUGAAAUGCGUAGAGAUGUGGAGGAACACCA
GUGGCGAAGGCGGCUCUCUGGCCUGCAACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-GUGCUAAGUGUUAGAGG
G-----------------------------------------------------------
---GUCAC----------------------------------------------------
---------------------ACCCUUUAGU-GCUGCAGCUAACGC-GAUAAGCA-----
-------CUCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAA-CCUU-
A-CCA-GGUCUUGACAUCCCU-U--G-A-CAAC-CCAA--GAGA---UUGG-G-CGUUCC
C---CC-UUCG-GG--GGGACAGGG-UGACAGG-UGGUGCAUGGUUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGCCU-CUAGUUGCC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
----------------G-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------G----------
--U-G---------GGCACUCUAGAGGGACU-GCCG-G----CGA-CAAGU-CG-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUGCCCCUU-AUGACCUGGGCUACACACGUGCUAC
AAUG-GGCGGUACAAAGGGC----------------------------------------
----------------------U-GCGAACCCGCGAGGGGGAGCGAA-UCCC--A-AAAA
GCCGCUCUCAGUUCGGAUUGCAGGCUGCAACUCGCCUGCAUG-AAGCCGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCACGAGAG-CUUGCAAC-ACCCGAAGUCGGUGCGGUAACCC--------------
----U-UA-C---------------------GGGAGCCAG----------CCGCCG-AAG
GUGGGGCAAGUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUUC---------
>Geobacter_sulfurreducens
-----------AAACUGGAGAGUUUGAUCCUG-GCUCAGAACGA-ACGCUGGCGGC-G-U
GC-CUAACACAUGCAAGUCGAACGUGA-UCC-----------AUCC------UU---C-G
-------GGGU--------------G-GU--GA-AAG-UGGCG-CACGGGUGAGUAACGC
GUGGAUAAU-CUGCCCGAGGA---------------------UUUGGG-AUAACAU--C-
U-CGAAA-GGGGUGCUAAUACCGAA-----------------------------------
------------------------------------------------------------
---------UAAGCCCACGGGG-UC-----------------------------------
------------------------------------------------------------
----U-AC-G---GAU-CU-UGCGGG-AAAA-GGGGGGGACU---------------U--
U-C-G--------------GGCCUCCUGUCUUCGGAUGAGUCCGCG-UACCAUUA-GCUA
--GUUGGUAGGGUAAUGGCCUA-CCAAGGCGACGAUGGUU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUGCGCAAUGGGG-GAA----ACCCUGACGCAGCAACGCCGCGU--GGGUGAUGAAGG
CC--UU-CG--GGUC-GU-AAAG-CCCUGUCGGGAGGGAAGAAAUGAUUGAGAG-CUAAU
A-C-CUCUUG-GUCUUGACGGUACCUCCGA-AGGAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUGUUCGGAAUUAUUGGGCGUAAAGCGCGU
GUAGGCGGUCUUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGAUGUGAAAGCCCCGGGCUCAACC-
--------------------------------UGGG-AA-GUGCAUUGGAAACUGGGA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GAGUACGGGA
G-AGGAGAGUGGAA-UUCCUAGUGUAGGAGUGAAAUCCGUAGAUAUUAGGAGGAACACCG
GUGGCGAAGGCGGCUCUCUGGACCGAUACUGACGCUGAGACGCGAAAGCGUGGGUAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-GUACUAGGUGUUGCGGG
U-----------------------------------------------------------
---AUUGAC---------------------------------------------------
----------------------CCCUGCAGU-GCCGUAGCUAACGC-AUUAAGUA-----
-------CUCC-GCCUGGGAAGUACGG-UCGCAAGAC-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAA-CCUU-
A-CCU-GGGCUUGACAUCCAC-G--G-A-ACCC-UCCC--GAAA---CGGA-G-GGGUGC
----CC-UUCG-GG---GAGCCGUG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UAUCA-UCAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUGAUGAAACU-GCCG-G----UGU-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-AUGUCCAGGGCUACACACGUGCUAC
AAUG-GCCGGUACAAAGAGU----------------------------------------
----------------------C-GCAAUGCCGCGAGGUGGAGCCAA-UCUC--A-AAAA
GCCGGUCUCAGUUCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCACGGGAG-UCGACUGG-UCCCGAAGUGCGUGAGCUAACCA--------------
----G-CA-A---------------------UGGAGGCAG----------CGUCCU-AAG
GAAUGGUCGGUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUUU----------
>Gloeobacter_violaceus
--------ACCAAAAUGGAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUGGCGGC-G-U
GC-UUAACGCAUGCAAGUCGAACGAGA-----------------UC------UU---C-G
-------GA----------------------UC-GAG-UGGCG-GACGGGUGAGUAACAC
GUGGGA-AU-CUGCCCUCAGG---------------------AGGGGG-AUAACGG--C-
C-GGAAA-CGGCCGCUAAUACCCCA-----------------------------------
------------------------------------------------------------
---------UAU-G-CC-------------------------------------------
------------------------------------------------------------
----G-CA-A-------------GGU-GAAAUGA-----------------------A--
U-U----------------------UCGCCUGAGGAUGAGCCCGCG-UCUGAUUA-GCUA
--GUUGGUGGGGUAAUGGCCUA-CCAAGGCUACGAUCAGU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUCCGCAAUGGGC-GAA----AGCCUGACGGAGCAACGCCGCGU--GGGUGAUGAAGG
CC--CG-UG--GGUC-GU-AAAG-CCCUUUUGUCAGGGACGA-------------AA--C
C--------------UGACGGUACCUGACG-AAUAAGCAUC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGAUGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGUAC
GUAGGCGGCCAGC-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCUGGGGUCAAAGCCCGCAGCCUAACU-
--------------------------------GCGG-AA-AGGCCCUGGAAACUGGUU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GAGUGCGGUA
G-GGGCAAGGGGAA-UUCCCGGUGUAGCGGUGAAAUGUGGAGAUAUCGGGAAGAACACCA
GCGGCGAAAGCGCCUUGCUGGACCGCAACUGACGCUGAGGUACGAAAGCCAGGGGAGCAA
AUGGGAUUAGAUACCCCA-GUAGUCCUGGCCGUAAACGAUGG-ACACUAGGUGUUGCGCG
U-----------------------------------------------------------
---AUCGAC---------------------------------------------------
----------------------CCGUGCAGU-GCCGUAGCUAACGC-GUUAAGUG-----
-------UCCC-GCCUGGGGAGUACGC-ACGCAAGUG-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCA-GGGCUUGACAUGUCG-C--G-A-AUCU-CGCG--GAAA---CGUG-G-GAGUG-
----CC-UUCG-GG----AACGCGA-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUCG-UCAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-CA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUGGCGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAGC-AUGGCUCUU-ACGUCCUGGGCUACACACGUGCUAC
AAUG-GUUCGGAUAAAGGGU----------------------------------------
----------------------C-GCAAUCUCGCGAGGGGGAGCCAA-UCCC--A-UAAA
CCGAAUCUCAGUUCGGAUUGCAGGCUGCAACUCGCCUGCAUG-AAGUCGGAAUCGCUAGU
AAUCGCAG-GUCAGC-AUACUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGAAG-CUGGUCAU-GCCCGAAGUCGGUAUUCUAACC---------------
----G-CA-A----------------------GGAGGGAG----------CCGCCG-AAG
GCGGGGCCGGUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUU----------
>Gluconobacter_oxydans
-----------------GAGAGUUUGAUCCUG-GCUCAGAGCGA-ACGCUGGCGGC-A-U
GC-UUAACACAUGCAAGUCGCACGAAG-----------------GU------UU---C-G
-------GC----------------------CU-UAG-UGGCG-GACGGGUGAGUAACGC
GUAGGG-AU-CUAUCCACGGG---------------------UGGGGG-ACAACUU--C-
G-GGAAA-CUGGAGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UGAUA-CC-------------------------------------------
------------------------------------------------------------
----U-GA-G-------------GGU-CAAA-GGC----------------------G--
C-A-A-------------------GUCGCCUGUGGAGGAACCUGCG-UUCGAUUA-GCUA
--GUUGGUGGGGUAAAGGCCUA-CCAAGGCGAUGAUCGAU-AGCUGGUUUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGC-GAA----AGCCUGAUCCAGCAAUGCCGCGU--GUGUGAAGAAGG
UC--UU-CG--GAUU-GU-AAAG-CACUUUCGACGGGGACGA-------------UG---
A--------------UGACGGUACCCGUAG-AAGAAGCCCC-GGCUA-ACU-UCGUGCCA
GCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUGACUGGGCGUAAAGGGCGC
GUAGGCGGUUGUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------ACAGUCAGAUGUGAAAUCCCCGGGCUUAACC-
--------------------------------UGGG-AA-CUGCAUUUGAUACGUGAC--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUA--GAGUUCGAGA
G-AGGGUUGUGGAA-UUCCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGGAAGAACACCG
GUGGCGAAGGCGGCAACCUGGCUCGAUACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCUGUAAACGAUGU-GUGCUGGAUGUUGGGAA
A-----------------------------------------------------------
---CUUAG----------------------------------------------------
----------------------UUUCUCAGU-GUCGAAGCUAACGC-GCUAAGCA-----
-------CACC-GCCUGGGGAGUACGG-CCGCAAGGU-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAA-CCUU-
A-CCA-GGGCUUG-CAUGGGG-A--GGA-CCGG-UUCA--GAGA---UGGA-C-CUUU--
-----C-UUCG-G-----ACCUCCC-GCACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCU-UUAGUUGCC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
------------U---U-UC--A-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--U-G---------GGCACUCUAGAGAGACU-GCCG-G----UGA-CAAGC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-AUGUCCUGGGCUACACACGUGCUAC
AAUG-GCGGUGACAGUGGGA----------------------------------------
----------------------A-GCUACAUGGUGACAUGGUGCUGA-UCUC--U--AAA
AGCCGUCUCAGUUCGGAUUGUACUCUGCAACUCGAGUACAUG-AAGGUGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGUUCG-ACCUUAAGCCGGUGAGCGAACC---------------
----G-CA-A----------------------GGACGCAG----------CCGACC-ACG
GACGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUUU----------
>Haemophilus_influenzae
------------AAUUGAAGAGUUUGAUCAUG-GCUCAGAUUGA-ACGCUGGCGGC-A-G
GC-UUAACACAUGCAAGUCGAACGGUAGCAG--------GAGAAAG------CU---U-G
-------CUUUCUU--------G--C-UG--AC-GAG-UGGCG-GACGGGUGAGUAAUGC
UUGGGA-AU-CUGGCUUAUGG---------------------AGGGGG-AUAACGA--C-
G-GGAAA-CUGUCGCUAAUACCGCG-----------------------------------
------------------------------------------------------------
---------UAUUA-UC-------------------------------------------
------------------------------------------------------------
----G-GA-A-------------GAU-GAAA-GUGCGGGACU---------------G--
A-G-A--------------GGCCGCAUGCCAUAGGAUGAGCCCAAG-UGGGAUUA-GGUA
--GUUGGUGGGGUAAAUGCCUA-CCAAGCCUGCGAUCUCU-AGCUGGUCUGAGAGGAU-G
ACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCGCAAUGGGG-GGA----ACCCUGACGCAGCCAUGCCGCGU--GAAUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-UUCUUUCGGUAUUGAGGAA-GGUUGAUGUG-UUAAU
A-G-UACAUC-AAAUUGACGUUAAAUACAG-AAGAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCGAGCGUUAAUCGGAAUAACUGGGCGUAAAGGGCAC
GCAGGCGGUUAUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUGAGGUGUGAAAGCCCUGGGCUUAACC-
--------------------------------UAGG-AA-UUGCAUUUCAGACUGGGU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AACUA--GAGUACUUUA
G-GGAGGGGUAGAA-UUCCACGUGUAGCGGUGAAAUGCGUAGAGAUGUGGAGGAAUACCG
AAGGCGAAGGCAGCCCCUUGGGAAUGUACUGACGCUCAUGUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCUGUAAACGCUGU-CGAUUUGGGGAUUGGGC
------------------------------------------------------------
---UUAGA----------------------------------------------------
-----------------------GCUUGGUG-CCCGUAGCUAACGU-GAUAAAUC-----
-------GACC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAUGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-ACUCUUGACAUCCUA-A--G-A-AGAG-CUCA--GAGA---UGAG-C-UUGUG-
----CC-UUCG-GG----AACUUAG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UU-GUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UAUCC-UUUGUUGCC-A
GCGA--------------------------------------------------------
------------------------------------------------------------
------------C---U-UG--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--C-G---------GGAACUCAAAGGAGACU-GCCA-G----UGA-UAAAC-UG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGGCCCUU-ACGAGUAGGGCUACACACGUGCUAC
AAUG-GCGUAUACAGAGGGA----------------------------------------
----------------------A-GCGAAGCUGCGAGGUGGAGCGAA-UCUC--A-UAAA
GUACGUCUAAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGCGA-AUCAGA-AUGUCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUGU-ACCAGAAGUAGAUAGCUUAACC---------------
----U-UU-U----------------------GGAGGGCG----------UUUACC-ACG
GUAUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGG
AUCACCUCCUUA----------
>Helicobacter_hepaticus
------------------AGAGUUUGAUCCUG-GCUCAGAGUGA-ACGCUGGCGGC-G-U
GC-CUAAUACAUGCAAGUCGAACGAUG-AAU-------C-UUCUAG------CU---U-G
-------CUAGAA-G----------U-GG--AU-UAG-UGGCG-CACGGGUGAGUAAUGC
AUAGGUUAU-GUGCCCUUUAG---------------------UCUGGG-AUAGCCA--C-
U-GGAAA-CGGUGAUUAAUACUGGA-----------------------------------
------------------------------------------------------------
---------UACUC-CC-------------------------------------------
------------------------------------------------------------
----U-AC-G-------------GGG-GAAA-GU-----------------------U--
U-U----------------------UCGCUAAAGGAUCAGCCUAUG-UCCUAUCA-GCUU
--GUUGGUGAGGUAAUGGCUCA-CCAAGGCUAUGACGGGU-AUCCGGCCUGAGAGGGU-G
AUCGGACACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUAGGGAA
UAUUGCUCAAUGGGG-GAA----ACCCUGAAGCAGCAACGCCGCGU--GGAGGAUGAAGG
UU--UU-AG--GAUU-GU-AAAC-UCCUUUUGUUAGAGAAGA-------------UU---
A--------------UGACGGUAUCUAACG-AAUAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUACUCGGAAUCACUGGGCGUAAAGAGUGC
GUAGGCGGGGUAA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGAUGUGAAAUCCUGUAGCUUAACU-
--------------------------------ACAG-AA-CUGCAUUUGAAACUGUUA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------CUCUG--GAGUGUGGGA
G-AGGUAGGUGGAA-UUCUUGGUGUAGGGGUAAAAUCCGUAGAGAUCAAGAGGAAUACUC
AUUGCGAAGGCGACCUGCUGGAACAUUACUGACGCUGAUGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCCUAAACGAUGG-AUGCUAGUUGUUGCCUU
G-----------------------------------------------------------
---CUUGU----------------------------------------------------
----------------------CAGGGCAGU-AAUGCAGCUAACGC-AUUAAGCA-----
-------UCCC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUAGACGG
GGACCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGAUACGCGAAGAA-CCUU-
A-CCU-AGGCUUGACAUUGAU-A--G-A-AUCU-ACUA--GAGA---UAGU-G-GAGUGC
C---C--UUCG--G-GG-AGCUUGA-AAACAGG-UGCUGCACGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUCC-UUAGUUGCU-A
GCAG--------------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
------------------------------------------------GC----------
--U-G---------AGCACUCUAAGGAGACU-GCCU-U----CG--UAAGG-AG-GAGGA
AGGUGAGGACGACGUCAAGUCAUC-AUGGCCCUU-ACGCCUAGGGCUACACACGUGCUAC
AAUG-GGGCGCACAAAGAGG----------------------------------------
----------------------A-GCAAUAUCGCGAGGUGGAGCAAA-UCUC--A--AAA
ACGUCUCUCAGUUCGGAUUGUAGUCUGCAACUCGACUACAUG-AAGCUGGAAUCGCUAGU
AAUCGUGA-AUCAGCCAUGUCACGGUGAAUACGUUCCCGGGUCUUGUACUCACCGCCCGU
CACACCAUGGGAG-UUGUAUUC-GCCUUAAGUCGGGAUACUAA-----------------
----A-UU---------------------------GGUUA----------CCGCCC-ACG
GCGGAUGCAGCGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGUGAACCUGCGGUUGG
AUCACCUCCU------------
>Legionella_pneumophila
----------------GAAGAGUUUGAUCCUG-GCUCAGAUUGA-ACGCUGGCGGC-A-U
GC-UUAACACAUGCAAGUCGAACGGCAGCAU--------UGUCUAG------CU---U-G
-------CUAGGCA--------G--A-UG--GC-GAG-UGGCG-AACGGGUGAGUAACGC
GUAGGA-AU-AUGCCUUGAAG---------------------AGGGGG-ACAACUU--G-
G-GGAAA-CUCAAGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UAAUG-UC-------------------------------------------
------------------------------------------------------------
----U-GA-G-------------GAC-GAAA-GCUGGGGACC---------------U--
U-C-G--------------GGCCUGGCGCUUUAAGAUUAGCCUGCG-UCCGAUUA-GCUA
--GUUGGUGGGGUAAGGGCCUA-CCAAGGCGACGAUCGGU-AGCUGGUCUGAGAGGAU-G
ACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGG-GCA----ACCCUGAUCCAGCAAUGCCGCGU--GUGUGAAGAAGG
CC--UG-AG--GGUU-GU-AAAG-CACUUUCAGUGGGGAGGAG-GGUUGAUAGG-UUAAG
A-G-CUGAUU-AACUGGACGUUACCCACAG-AAGAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGGGUGC
GUAGGUGGUUGAU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUUAUCUGUGAAAUUCCUGGGCUUAACC-
--------------------------------UGGG-AC-GGUCAGAUAAUACUGGUU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUC--GAGUAUGGGA
G-AGGGUAGUGGAA-UUUCCGGUGUAGCGGUGAAAUGCGUAGAGAUCGGAAGGAACACCA
GUGGCGAAGGCGGCUACCUGGCCUAAUACUGACACUGAGGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCUGUAAACGAUGU-CAACUAGCUGUUGGUUA
U-----------------------------------------------------------
---AUGAAA---------------------------------------------------
----------------------AUAAUUAGU-GGCGCAGCAAACGC-GAUAAGUU-----
-------GACC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-ACCCUUGACAUACAG-U--G-A-AUUU-UGCA--GAGA---UGCA-U-UAGUG-
----CC-UUCG-GG----AACACUG-AUACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGUAACGAGCGCAACCCU-UAUCC-UUAGUUGCC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
------------G---U-GA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--U-G---------GGGACUCUAAGGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGCGGGGAUGACGUCAAGUCAUC-AUGGCCCUU-ACGGGUAGGGCUACACACGUGCUAC
AAUG-GCCGAUACAGAGGGC----------------------------------------
----------------------G-GCGAAGGGGCGACCUGGAGCAAA-UCCU--U-AAAA
GUCGGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGCGA-AUCAGC-AUGUCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUGC-ACCAGAAGUAGAUAGUCUAACC---------------
----U-UC-G----------------------GGGGGACG----------UUUACC-ACG
GUGUGGUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCU---------------
>Leifsonia_xyli
---------------CGGAGAGUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-UUAACACAUGCAAGUCGAACGAUG-AAC---------CAGGAG------CU---U-G
-------CUCUUG------------G-GA--AU-UAG-UGGCG-AACGGGUGAGUAACAC
GUGAGUAAC-CUGCCCUUGAC---------------------UCUGGG-AUAACCU--C-
C-GGAAA-CGGAAGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UACGA-ACCGCGG-AG-----------------------------------
------------------------------------------------------------
----G-CA-U---CUCCAG-CGGUUG-GAAA-GA-----------------------A--
C-U----------------------UCGGUCGAGGAUGGACUCGCG-GCCUAUCA-GGUA
--GUUGGUGAGGUAACGGCUCA-CCAAGCCUACGACGGGU-AGCCGGCCUGAGAGGGU-G
ACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GAA----AGCCUGAUGCAGCAACGCCGCGU--GAGGGAUGACGG
CC--UU-CG--GGUU-GU-AAAC-CUCUUUUAGUAGGGAAGAA-GC---------GA--A
A-----------G--UGACGGUACCUGCAG-AAAAAGCACC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUC
GUAGGCGGUCUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CGCGUCUGCUGUGAAAACCCGAGGCUCAACC-
--------------------------------UCGG-GC-CUGCAGUGGGUACGGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUA--GAGUGCGGUA
G-GGGAGAAUGGAA-UUCCUGGUGUAGCGGUGGAAUGCGCAGAUAUCAGGAGGAACACCG
AUGGCGAAGGCAGUUCUCUGGGCCGUAACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGUUGG-GCGCUAGAUGUGGGGAC
C-----------------------------------------------------------
--AUUCCAC---------------------------------------------------
----------------------GGUUUCCGU-GUCGCAGCUAACGC-AUUAAGCG-----
-------CCCC-GCCUGGGGAGUACGG-CCGCAAGGC-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGCGGAGCAUGCGGAUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCA-AGGCUUGACAUAUACGA--G-A-ACGG-GCUA--GAAA---UAGU-C-AAC---
----UC-UUUG-GA----CACUCGU-AAACAGG-UGGUGCAUGGUUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUUC-UAUGUUGCC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
------------G---U-AA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--U-G---------GGAACUCAUAGGAGACU-GCCG-G----GGU-CAACU-CG-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUGCCCCUU-AUGUCUUGGGCUUCACGCAUGCUAC
AAUG-GCCGGUACAAAGGGC----------------------------------------
----------------------U-GCAAUACCGUAAGGUGGAGCGAA-UCCC--A-AAAA
GCCGGUCUCAGUUCGGAUUGAGGUCUGCAACUCGACCUCAUG-AAGUCGGAGUCGCUAGU
AAUCGCAG-AUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CAAGUCAUGAAAG-UCGGUAAC-ACCCGAAGCCGGUGGCCCAACC---------------
----C-UU-GU---------------------GGAGGGAG----------CCGUCG-AAG
GUGGGGUCGGUGAUUAGGACUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUUC---------
>Listeria_monocytogenes
-----------------GAGAGUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-CUAAUACAUGCAAGUCGAACGAAC-GGA--------GGAAGAG------CU---U-G
-------CUCUUCC-----------A-AA--GU-UAG-UGGCG-GACGGGUGAGUAACAC
GUGGGCAAC-CUGCCUGUAAG---------------------UUGGGG-AUAACUC--C-
G-GGAAA-CCGGGGCUAAUACCGAA-----------------------------------
------------------------------------------------------------
---------UGAUA-AAGUGUG-GC-----------------------------------
------------------------------------------------------------
----G-CA-U---GCC-AC-GCUUUU-GAAA-GAUGGU-------------------U--
U-C-G----------------GCUAUCGCUUACAGAUGGGCCCGCG-GUGCAUUA-GCUA
--GUUGGUAGGGUAAUGGCCUA-CCAAGGCAACGAUGCAU-AGCCGACCUGAGAGGGU-G
AUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUAGGGAA
UCUUCCGCAAUGGAC-GAA----AGUCUGACGGAGCAACGCCGCGU--GUAUGAAGAAGG
UU--UU-CG--GAUC-GU-AAAG-UACUGUUGUUAGAGAAGAACAAGGAUAAGA-GUA-A
C-U-GCUUGU-CCCUUGACGGUAUCUAACC-AGAAAGCCAC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUGUCCGGAUUUAUUGGGCGUAAAGCGCGC
GCAGGCGGUCUUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGAUGUGAAAGCCCCCGGCUUAACC-
--------------------------------GGGG-AG-GGUCAUUGGAAACUGGAA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUG--GAGUGCAGAA
G-AGGAGAGUGGAA-UUCCACGUGUAGCGGUGAAAUGCGUAGAUAUGUGGAGGAACACCA
GUGGCGAAGGCGACUCUCUGGUCUGUAACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-GUGCUAAGUGUUAGGGG
G-----------------------------------------------------------
---UUUCC----------------------------------------------------
---------------------GCCCCUUAGU-GCUGCAGCUAACGC-AUUAAGCA-----
-------CUCC-GCCUGGGGAGUACGA-CCGCAAGGU-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAA-CCUU-
A-CCA-GGUCUUGACAUCCUU-U--G-A-CCAC-UCUG--GAGA---CAGA-G-CUUUC-
----CC-UUCG-GG----GACAAAG-UGACAGG-UGGUGCAUGGUUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGAUU-UUAGUUGCC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-UA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAAAGUGACU-GCCG-G----UG--CAAGC-CG-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUGCCCCUU-AUGACCUGGGCUACACACGUGCUAC
AAUG-GAUAGUACAAAGGGU----------------------------------------
----------------------C-GCGAAGCCGCGAGGUGGAGCUAA-UCCC--A-UAAA
ACUAUUCUCAGUUCGGAUUGUAGGCUGCAACUCGCCUACAUG-AAGCCGGAAUCGCUAGU
AAUCGUGG-AUCAGC-AUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCACGAGAG-UUUGUAAC-ACCCGAAGUCGGUAGGGUAACCU--------------
----U-UA-----------------------UGGAGCCAG----------CCGCCG-AAG
GUGGGACAGAUAAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG
AUCACCUCCUUUCU--------
>Magnetococcus_sp.
------------------AGAGUUUGAUCCUG-GCUCAGAACGA-ACGUUGGUGGC-A-U
GC-UUAACACAUGCAAGUCGAACGGUAGCAG-----------GCCC------UU---C-G
-------GGGU-----------G--C-UG--AC-GAG-UGGCG-CACGGGUGAGUAACGC
GUGGAUGAC-CUACCCAGAUG---------------------UGGGGG-ACAACAG--U-
U-GGAAA-CGACUGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UAAUC-CC-------------------------------------------
------------------------------------------------------------
----U-AA-G-------------GGG-GAAA-GGC----------------------U--
U-A-G-------------------GCCGCAUUUGGAGGGGUCCGCG-UUGGAUUA-GGUA
--GUUGGUGGGGUAAAGGCCUA-CCAAGCCGACGAUCCAU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCGCAAUGGGG-GAA----ACCCUGACGCAGCAAUGCCACGU--GAAUGAUGAAGG
CC--UU-CG--GGUU-GU-AAAG-UUCUUUUAGUAGGGAAGA-------------UA---
G--------------UGACGGUACCUACAG-AAAAAGCUCC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGGGCAAACGUUGUUCGGAAUCACUGGGCGUAAAGGGCGC
GUAGGCGGUUAUC-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGCCAGAAGUGAAAUCUCGGGGCUCAACC-
--------------------------------UCGA-AA-CUGCUUUUGGAACUGGAA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUA--GAAUCCGGUA
G-AGGAUGGUGGAA-UUCCCCGUGUAGAGGUGAAAUUCGUAGAUAUGGGGAGGAACACCG
GAGGCGAAGGCGGCCAUCUGGGCCGGUAUUGACGCUGAGGCGCGAAAGUGUGGGUAGCGA
ACAGGAUUAGAUACCCUG-GUAGUCCACACCGUAAACGAUGA-GUGCUAGUAGUUGCGGG
U-----------------------------------------------------------
---AUCGAC---------------------------------------------------
----------------------CCCUGCGGC-UACGAAGUUAACAC-GAUAAGCA-----
-------CUCC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-GCUUUUGACAUCCUU-G--G-A-ACCU-UACG--GAGA---CGUA-G-GGGUGC
----UU-UUCG-GA---GAACCAAG-UGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-UGCCU-UUAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAGAGGAACU-GCCG-G----UGU-UAAGC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGGCCCUU-AUGGGCAGGGCUACACACGUGCUAC
AAUG-GCGGAUACAGAGGGC----------------------------------------
----------------------G-GCGAAGCAGUGAUGUGGAGCGAA-UCUC--U-UAAA
GUCCGUCUCAGUUCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUUGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGUUUU-ACCCGAAGCCGGUGGCCUAACCU--------------
----U-UC-G---------------------AGGGGGGAG----------CUGUCU-ACG
GUAAGAUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUUU----------
>Magnetospirillum_magnetotacticum
------------------AGAGUUUGAUCCUG-GCUCAGAGCGA-ACGCUGGCGGC-A-G
GC-UUAACACAUGCAAGUCGAACGGGC----------------ACC------UU---C-G
-------GGU---------------------GU-CAG-UGGCA-GACGGGUGAGUAACAC
GUGGGA-AC-GUGCCCUUCGG---------------------UUCGGA-AUAACUC--A-
G-GGAAA-CUUGAGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UACGC-CC-------------------------------------------
------------------------------------------------------------
----U-UC-U-------------GGG-GAAA-GG-----------------------U--
U-U-A--------------------CUGCCGAAGGAUCGGCCCGCG-UCUGAUUA-GCUU
--GUUGGUGGGGUAACGGCCUA-CCAAGGCGACGAUCAGU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGC-GCA----AGCCUGAUCCAGCCAUGCCGCGU--GAGUGAUGAAGG
CC--UU-AG--GGUU-GU-AAAG-CUCUUUUGUCCGGGACGA-------------UA---
A--------------UGACGGUACCGGAAG-AAUAAGCCCC-GGCUA-ACU-UCGUGCCA
GCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGCGC
GUAGGCGGCCGAU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCGGGGGUGAAAGCCUGUGGCUCAACC-
--------------------------------ACAG-AA-UUGCCUUCGAUACUGGUU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GAGACCGGAA
G-AGGACAGCGGAA-CUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCA
GUGGCGAAGGCGGCUGUCUGGUCCGGUUCUGACGCUGAGGCGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-AUGCCAGCCGUUGGCCU
G-----------------------------------------------------------
----CUUG----------------------------------------------------
----------------------CAGGUCAGU-GGCGCCGCUAACGC-AUUAAGCA-----
-------UUCC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAA-CCUU-
A-CCA-UCCCUUGACAUGGCA-U--G-U-UACC-UCGG--GAGA---CCGG-G-GAUCC-
----UC-UUCG-GA----GGCGUGC-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCA-CGUCC-UUAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-CA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAGGGAGACU-GCCG-G----UGA-UAAGC-CGCGAGGA
AGGUGUGGAUGACGUCAAGUCCUC-AUGGCCCUU-ACGGGAUGGGCUACACACGUGCUAC
AAUG-GCGGUGACAGUGGGA----------------------------------------
----------------------C-GCGAAACCGCGAGGUCGAGCAAA-UCCC--C--AAA
AACCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUG-AAGGCGGAAUCGCUAGU
AAUCGUGG-AUCAGC-ACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGUCUU-ACCCGACGGCGCUGCGCCAACC---------------
----G-CA-A----------------------GGAGGCAG----------GCGACC-ACG
GUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUG-
----------------------
>Mesoplasma_florum
-----------UAAAAUGAGAGUUUGAUCCUG-GCUCAGGAUAA-ACGCUGGCGGC-A-U
GC-CUAAUACAUGCAAGUCGAACGGAG----------------GUG------CU---U-G
-------CAC---------------------CU-CAG-UGGCG-AACGGGUGAGUAACAC
GUAUCUAAU-CUACCUUCUAG---------------------CGGGGG-AUAACUU--U-
U-GGAAA-CGAAAGGUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UGUGGAUGUUAUUAUC-----------------------------------
------------------------------------------------------------
----G-CA-U---GAG-AA-AACAUU-CAAA-GAUCC--------------------G--
U-U-U-----------------GGAUCACUAGAAGAUGAGGAUGCG-GCGUAUUA-GCUA
--GUAGGCGGGGUAAAGGCCCA-CCUAGGCGAUGAUACGU-AGCCGAACUGAGAGGUU-G
AUCGGCCACAUUGGGACUGAGAUACGGCCCAGACUCCUACGG-GAGGCAGCAGUAGGGAA
UUUUUCACAAUGGAC-GAA----AGUCUGAUGAAGCAAUGCCGCGU--GAGUGAUGACGG
CC--UU-CG--GGUU-GU-AAAG-CUCUGUUGUAAGGGAAGAAAACAUAGGAGA-GGA-A
A-U-GCUCUU-AUCUUGACGGUACCUUACC-AGAAAGCCAC-GGCUA-ACU-AUGUGCCA
GCAGCCGCGGUAAUACAUAGGUGGCAAGCGUUAUCCGGAUUUAUUGGGCGUAUAGGGUGC
GUAGGCGGUUUCG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUUUGAGGUUAAAGCCCGGAGCUCAACU-
--------------------------------CCGG-UU--CGCCUUGAAAACUGCGG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUA--GAAUAUCAGA
G-AGGUAAGCGGAA-UUCCAUGUGUAGCGGUAAAAUGCGUAGAUAUAUGGAAGAACACCA
GUGGCGAAAGCGGCUUACUGGCUGAUUAUUGACGCUGAGGCACGAAAGCGUGGGGAGCAA
AUAGGAUUAGAUACCCUA-GUAGUCCACGCCGUAAACGUUGA-GUACUAAGUAUUGGGG-
------------------------------------------------------------
----AUUA----------------------------------------------------
------------------------CCUCAGU-GCUGCAGCUAACGC-AUUAAGUA-----
-------CUCC-GCCUGAGUAGUAUGC-UCGCAAGAG-UGAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GUGGUGGAGCAUGUGGUUUAAUUCGAAGCAACACGAAGAA-CCUU-
A-CCA-GGGCUUGACAUACAG-U--G-C-AAAGCUACA--GAGA---UGUAGU-GGA---
-----G-GUUA-A-------CAUUG-AUACAGG-UGGUGCAUGGUUGUCGUCAGUUCGUG
CC-GUGAGGUGUUGGGUUAAGUCCCGCAACGAACGCAACCCU-UGUCG-UUAGUUACU-A
ACAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------AGGACUCUAACGAGACU-GCUA-G----UG--UAAGC-UA-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUGCCCCUU-AUGUCCUGGGCUACACACGUGCUAC
AAUG-GCCGAUACAAAGAGU----------------------------------------
----------------------C-GCAAUCUCGCGAGGGGGAGCUAA-UCUC--A-AAAA
GUCGGUCUCAGUUCGGAUUGAAGUCUGCAACUCGACUUCAUG-AAGCCGGAAUCACUAGU
AAUCGCGA-AUCAGCUAUGUCGCGGUGAAUACGUUCUCGGGUCUUGUACACACCGCCCGU
CAAACCACGAGAG-UUGGUAAU-ACCAGAAGUACGUUUCCUAACC---------------
----G-UA-A----------------------GGAAGGCG----------CGUCCC-AAG
GUAGGACUAGCGAUUGGGGUUAAGUCGUAACAAGGUAUCCGUACGGGAACGUGCGGAUGG
AUCACCUCCUUU----------
>Mycobacterium_leprae
---------UUUGUUUGGAGAGUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-UUAACACAUGCAAGUCGAACGGAA-AGG---------UC--UCUAAAAAAU---C-U
-UUUUUAGA--GA------------U-AC--UC-GAG-UGGCG-AACGGGUGAGUAACAC
GUGGGUAAU-CUGCCCUGCAC---------------------UUCAGGGAUAAGCU--U-
G-GGAAA-CUGGGUCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UAGGA-CUUCAAG-GC-----------------------------------
------------------------------------------------------------
----G-CA-U---GUC-UU-GUGGUG-GAAA-GC-----------------------U--
U-U-UU-------------------GCGGUGCAGGAUGGGCCCGCG-GCCUAUCA-GCUU
--GUUGGUGGGGUGACGGCCUA-CCAAGGCGACGACGGGU-AGCCGGCCUGAGAGGGU-G
UACGGCCACACUGGGACUGAGAUACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GCA----AGCCUGAUGCAGCGACGCCGCGU--GGGGGAUGACGG
CU--UU-CG--GGUU-GU-AAAC-CUCUUUCACCAUCGACGAAGGUCUGGG----UU--U
U------CUC-GGAUUGACGGUAGGUGGAG-AAGAAGCACC-GGCCA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUGUCCGGAAUUACUGGGCGUAAAGAGCUC
GUAGGUGGUUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CGCGUUGUUCGUGAAAUCUCACGGCUUAACU-
--------------------------------GUGA-GC-GUGCGGGCGAUACGGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUG--GAGUACUGCA
G-GGGAGACUGGAA-UUCCUGGUGUAGCGGUGGAAUGCGCAGAUAUCAGGAGGAACACCA
GUGGCGAAGGCGGGUCUCUGGGCAGUAACUGACGCUGAGGAGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGGUGG-GUACUAGGUGUGGGUUU
C-----------------------------------------------------------
--CUUCCUU---------------------------------------------------
----------------------GGGAUCCGU-GCCGUAGCUAACGC-AUUAAGUA-----
-------CCCC-GCCUGGGGAGUACGG-CCGCAAGGC-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGCGGAGCAUGUGGAUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-GGGUUUGACAUGCACAG--G-A-UGCG-UCUA--GAGA---UAGG-C-ACU---
----CC-CUUGUGG------CCUGU-GUGCAGG-UGGUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCU-CAUGUUGCC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
------------G---U-AA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--U-G---------GGGACUCGUGAGAGACU-GCCG-C----GGU-CAACU-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGCCCCUU-AUGUCCAGGGCUUCACACAUGCUAC
AAUG-GCCGGUACAAAGGGC----------------------------------------
----------------------U-GCGAUGCCGCAAGGUUAAGCGAA-UCCU--UUUAAA
GCCGGUCUCAGUUCGGAUCGGGGUCUGCAACUCGACCCCGUG-AAGUCGGAGUCGCUAGU
AAUCGCAG-AUCAGCAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACGUCAUGAAAG-UCGGUAAC-ACCCGAAGCCAGUGGCCUAACC---------------
----C-UC-G----------------------GGAGGGAG----------CUGUCC-AAG
GUGGGAUCGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUUCU--------
>Neisseria_gonorrhoeae
-----------GAACAUAAGAGUUUGAUCCUG-GCUCAGAUUGA-ACGCUGGCGGC-A-U
GC-UUUACACAUGCAAGUCGGACGGCAGCAC--------AGGGAAG------CU---U-G
-------CUUCUCG--------G--G-UG--GC-GAG-UGGCG-AACGGGUGAGUAACAU
AUCGGA-AC-GUACCGGGUAG---------------------CGGGGG-AUAACUG--A-
U-CGAAA-GAUCAGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UACGU-CU-------------------------------------------
------------------------------------------------------------
----U-GA-G-------------AGG-GAAA-GCAGGGGACC---------------U--
U-C-G--------------GGCCUUGCGCUAUCCGAGCGGCCGAUA-UCUGAUUA-GCUG
--GUUGGCGGGGUAAAGGCCCA-CCAAGGCGACGAUCAGU-AGCGGGUCUGAGAGGAU-G
AUCCGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUGGACAAUGGGC-GCA----AGCCUGAUCCAGCCAUGCCGCGU--GUCUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-GACUUUUGUCAGGGAAGAA-AAGGCCGUUG-CCAAU
A-U-CGGCGG-CCGAUGACGGUACCUGAAG-AAUAAGCACC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGGGC
GCAGACGGUUACU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGCAGGAUGUGAAAUCCCCGGGCUCAACC-
--------------------------------CGGG-AA-CUGCGUUCUGAACUGGGU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUC--GAGUGUGUCA
G-AGGGAGGUGGAA-UUCCACGUGUAGCAGUGAAAUGCGUAGAGAUGUGGAGGAAUACCG
AUGGCGAAGGCAGCCUCCUGGGAUAACACUGACGUUCAUGUCCGAAAGCGUGGGUAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCCUAAACGAUGU-CAAUUAGCUGUUGGGCA
A-----------------------------------------------------------
---CUUGA----------------------------------------------------
----------------------UUGCUUGGU-AGCGUAGCUAACGC-GUGAAAUU-----
-------GACC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GCGGUGGAUGAUGUGGAUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-GGUUUUGACAUGUGC-G--G-A-AUCC-UCCG--GAGA---CGGA-G-GAGUG-
----CC-UUCG-GG----AGCCGUA-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCA-UUAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-CG--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAAUGAGACU-GCCG-G----UGA-CAAGC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-AUGACCAGGGCUUCACACGUCAUAC
AAUG-GUCGGUACAGAGGGU----------------------------------------
----------------------A-GCCAAGCCGCGAGGCGGAGCCAA-UCUC--A-CAAA
ACCGAUCGUAGUCCGGAUUGCACUCUGCAACUCGAGUGCAUG-AAGUCGGAAUCGCUAGU
AAUCGCAG-GUCAGC-AUACUGCGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGGGAU-ACCAGAAGUAGGUAGGGUAACC---------------
----G-CA-A----------------------GGAGUCCG----------CUUACC-ACG
GUAUGCUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUUU----------
>Nitrosomonas_europaea
------------------AGAGUUUGAUCCUG-GCUCAGAUUGA-ACGCUGGCGGC-A-U
GC-UUUACACAUGCAAGUCGAACGGCAGCGG-----------GGGC------UU---C-G
-------GCCU-----------G--C-CG--GC-GAG-UGGCG-AACGGGUGAGUAAUAC
AUCGGA-AC-GUGUCCUUAAG---------------------UGGGGA-AUAACGC--A-
U-CGAAA-GAUGUGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UA-UC-UC-------------------------------------------
------------------------------------------------------------
----U-GA-G-------------GAG-AAAA-GCAGGGGAUC---------------G--
C-A-A--------------GACCUUGCGCUAAAGGAGCGGCCGAUG-UCUGAUUA-GCUA
--GUUGGUGGGGUAAAGGCUUA-CCAAGGCAACGAUCAGU-AGUUGGUCUGAGAGGAC-G
GCCAACCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUGGACAAUGGGC-GAA----AGCCUGAUCCAGCCAUGCCGCGU--GAGUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CUCUUUUAGUCGGAAAGAA-AGAGUUGCAA-UGAAU
A-A-UUGUGA-UUUAUGACGGUACCGACAG-AAAAAGCACC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGGGUGC
GCAGGCGGUCUUG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCAGAUGUGAAAGCCCCGGGCUUAACC-
--------------------------------UGGG-AA-UUGCGUUUGAAACUACAA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GAGUGCAGCA
G-AGGGGAGUGGAA-UUCCAUGUGUAGCAGUGAAAUGCGUAGAGAUGUGGAAGAACACCG
AUGGCGAAGGCAGCUCCCUGGGUUGACACUGACGCUCAUGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCCUAAACGAUGU-CAACUAGUUGUCGGAUC
U-----------------------------------------------------------
---AAUUAA---------------------------------------------------
----------------------GGAUUUGGU-AACGUAGCUAACGC-GUGAAGUU-----
-------GACC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GCGGUGGAUUAUGUGGAUUAAUUCGAUGCAACGCGAAAAA-CCUU-
A-CCU-ACCCUUGACAUGCUU-G--G-A-AUCU-AAUG--GAGA---CAUA-A-GAGUAC
----CC-GAAA-GG---GAGCCAAG-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCA-CUAAUUGCU-A
UCAU--------------------------------------------------------
------------------------------------------------------------
------------U---U-UU--A-------------------------------------
------------------------------------------------------------
-------------------------------------------------A----------
--U-G---------AGCACUUUAGUGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-AUGGGUAGGGCUUCACACGUAAUAC
AAUG-GCGUGUACAGAGGGU----------------------------------------
----------------------U-GCCAACCCGCGAGGGGGAGCCAA-UCUC--A-GAAA
GCACGUCGUAGUCCGGAUCGGAGUCUGCAACUCGACUCCGUG-AAGUCGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGUUUUC-ACCAGAAGCAGGUAGCUUAACC---------------
----G-UA-A----------------------GGAGGGCG----------CUUGCC-ACG
GUGGGGGUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUUUC---------
>Novosphingobium_aromaticivorans
------------------AGAGUUUGAUCCUG-GCUCAGAACGA-ACGCUGGCGGC-A-U
GC-CUAACACAUGCAAGUCGAACGAAC-----------------CC------UU---C-G
-------GG----------------------GU-UAG-UGGCG-CACGGGUGCGUAACGC
GUGGGA-AU-CUGCCCUUUGC---------------------UUCGGA-AUAACAG--U-
U-AGAAA-UGACUGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UGAUG-UC-------------------------------------------
------------------------------------------------------------
----U-UC-G-------------GAC-CAAA-GA-----------------------U--
U-U-A--------------------UCGGCAAGGGAUGAGCCCGCG-UAGGAUUA-GGUA
--GUUGGUGGGGUAAAGGCCUA-CCAAGCCGACGAUCCUU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGC-GCA----AGCCUGAUCCAGCAAUGCCGCGU--GAGUGAUGAAGG
CC--UU-CG--GGUC-GU-AAAG-CUCUUUUACCAGGGAUGA-------------UA---
A--------------UGACAGUACCUGGAG-AAUAAGCUCC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGAGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCAC
GUAGGCGGCUACU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCAGAGGUGAAAGCCCGGGGCUCAACC-
--------------------------------CCGG-AA-CUGCCUUUGAAACUAGGU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUG--GAAUCUUGGA
G-AGGUCAGUGGAA-UUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCA
GUGGCGAAGGCGACUGACUGGACAAGUAUUGACGCUGAGGUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-UAACUAGCUGUCCGGUC
A-----------------------------------------------------------
---CUUGG----------------------------------------------------
----------------------UGAUUGGGU-GGCGCAGCUAACGC-AUUAAGUU-----
-------AUCC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGGCCUGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAA-CCUU-
A-CCA-GCGUUUGACAUCCCG-C--G-C-UACU-UCCA--GAGA---UGGA-A-GGUUC-
----CC-UUCG-GG----GACGCGG-UGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUCC-UUAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-UA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAAGGAAACC-GCCG-G----UGA-UAAGC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-ACACGCUGGGCUACACACGUGCUAC
AAUG-GCGGUGACAGUGGGC----------------------------------------
----------------------A-GCAAGCACGCGAGUGUGAGCUAA-UCUC--C--AAA
AGCCGUCUCAGUUCGGAUUGUUCUCUGCAACUCGAGAGCAUG-AAGGCGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCAGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGGUUC-ACCCGAAGGCGUUGCGCUAACUC--------------
----G-CA-A---------------------GAGAGGCAG----------GCGACC-ACG
GUGGGCUUAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUUUCU--------
>Oceanobacillus_iheyensis
-----------UUUAUGGAGAGUUUGAUCUUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-CUAAUACAUGCAAGUCGAGCGCAU-GAA-AUUAUUUGAUUCUC------UU---C-G
-------GAGUUGACGAUAAU----G-GA--AU-GAG-CGGCG-GACGGGUGAGUAACAC
GUAGGCAAC-CUGCCUGUAAG---------------------ACUGGG-AUAACUC--G-
U-GGAAA-CGCGAGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UAACA-CUUUUUA-UC-----------------------------------
------------------------------------------------------------
----U-CC-U---GAU-GA-GAAGUU-GAAA-GGCGGC-------------------U--
U-U-U----------------GCUGUCACUUACAGAUGGGCCUGCG-GCGCAUUA-GCUA
--GUUGGUAAGGUAACGGCUUA-CCAAGGCGACGAUGCGU-AGCCGACCUGAGAGGGU-G
AUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUAGGGAA
UCUUCCGCAAUGGAC-GAA----AGUCUGACGGAGCAACGCCGCGU--GAGUGAUGAAGG
UU--UU-CG--GAUC-GU-AAAA-CUCUGUUGUUAGGGAAGAACAAGUGCCAUA-GUAAC
U---GAUGGC-ACCUUGACGGUACCUAACC-AGAAAGCCAC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUGUCCGGAAUUAUUGGGCGUAAAGCGCUC
GCAGGCGGUUCUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGAUGUGAAAUCUUACGGCUCAACC-
--------------------------------GUAA-AC-GUGCAUUGGAAACUGGGG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AACUU--GAGUGCAGAA
G-AGGAGAGUGGAA-UUCCACGUGUAGCGGUGAAAUGCGUAGAGAUGUGGAGGAACACCA
GUGGCGAAGGCGACUCUCUGGUCUGUAACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-GUGCUAGGUGUUAGGGG
G-----------------------------------------------------------
---UUUCC----------------------------------------------------
---------------------GCCCCUUAGU-GCUGAAGUUAACGC-AUUAAGCA-----
-------CUCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUCAAAAGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAA-CCUU-
A-CCA-GGUCUUGACAUCCUC-U--G-A-ACAC-UCUA--GAGA---UAGA-G-UUUUC-
----CC-UUCG-GG----GACAGAG-UGACAGG-UGGUGCAUGGUUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGAUC-UUAGUUGCC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAAGGUGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUGCCCCUU-AUGACCUGGGCUACACACGUGCUAC
AAUG-GAUGGAACAAAGGGA----------------------------------------
----------------------A-GCGAACCCGCGAGGUCAAGCAAA-UCCC--A-CAAA
ACCAUUCUCAGUUCGGAUUGUAGGCUGCAACUCGCCUACAUG-AAGCCGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCACGAGAG-UUGGUAAC-ACCCGAAGUCGGUGAGGUAACC---------------
----G-UA-A----------------------GGAGCCAG----------CCGCCG-AAG
GUGGGACUAAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG
AUCACCUCCUUUCU--------
>Photorhabdus_luminescens
-----------AAAUUGAAGAGUUUGAUCAUG-GCUCAGAUUGA-ACGCUGGCGGC-A-G
GC-CUAACACAUGCAAGUCGGGCGGUAACAG--------GAAAGUG------CC---U-G
-------CACUUUU--------G--C-UG--AC-GAG-CGGCG-GACGGGUGAGUAAUGU
CUGGGG-AU-CUGCCCGAGGG---------------------CGGGGG-AUAACCA--C-
U-GGAAA-CGGUGGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UAAUG-UC-------------------------------------------
------------------------------------------------------------
----G-CG-A-------------GAC-CAAA-GUGGGGGACCU--------------G--
A-A-A-------------GGGCCUCACGCCGUCGGAUGAACCCAGA-UGGGAUUA-GCUG
--GUAGGUAGGGUAAUGGCCUA-CCUAGGCGACGAUCUCU-AGCUGGUCUGAGAGGAU-G
ACCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GCA----AGCCUGAUGCAGCCAUGCCGCGU--GUAUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-UACUUUCAGCGGGGAGGAA-GGGUUUAGCC-UGAAG
A-G-GGUUAG-AUUUUGACGUUACCCGCAG-AAGAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUGACUGGGCGUAAAGCGCAC
GCAGGCGGUCAAU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUUAGAUGUGAAAUCCCCGGGCUCAACC-
--------------------------------UGGG-AA-UGGCAUCUAAGACUGGUU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUG--GAGUCUCGUA
G-AGGGGGGUAGAA-UUCCAUGUGUAGCGGUGAAAUGCGUAGAGAUGUGGAGGAAUACCG
GUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCUGUAAACGAUGU-CGAUUUGGAGGUUGCGG
U-----------------------------------------------------------
---CUUGA----------------------------------------------------
----------------------ACGGUGGCU-UCCGAAGCUAACGC-GUUAAAUC-----
-------GACC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAUGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-ACUCUUGACAUCCUC-A--G-A-AUUU-GCUG--GAGA---CAGC-G-AAGUG-
----CC-UUAG-GG----AACUGAG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UU-GUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UAUCC-UUUGUUGCC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
------------G---U-GA--A-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--U-G---------GGAACUCAAAGGAGACU-GCCG-G----UGA-UAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGGCCCUU-ACGAGUAGGGCUACACACGUGCUAC
AAUG-GCGGAUACAAAGUGA----------------------------------------
----------------------A-GCGACCUCGCGAGAGCAAGCGGA-ACAC--A-CAAA
GUCUGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGUAG-AUCAGC-AUGCUACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUGC-AAAAGAAGUCGGUAGCUUAACC---------------
----G-AA-A----------------------GGGGGGCG----------CUGACC-ACU
UUGUGGCUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGG
AUCACCUCCUUA----------
>Polaromonas_sp.
------------------AGAGUUUGAUCCUG-GCUCAGAUUGA-ACGCUGGCGGC-A-U
GC-CUUACACAUGCAAGUCGAACGGCAGCAC-----------GGGA------GC---A-A
-------UCCU-----------G--G-UG--GC-GAG-UGGCG-AACGGGUGAGUAAUAU
AUCGGA-AC-GUGCCCAGUCG---------------------UGGGGG-AUAACGU--A-
G-AGAAA-UUUACGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UACGA-UC-------------------------------------------
------------------------------------------------------------
----U-AA-G-------------GAU-GAAA-GCGGGGGAUC---------------G--
C-A-A--------------GACCUCGCGCGAUUGGAGCGGCUGAUA-UCAGAUUA-GGUU
--GUUGGUGAGGUAAAAGCUCA-CCAAGCCGACGAUCUGU-AGCUGGUUUGAGAGAAC-G
ACCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUGGACAAUGGGC-GAA----AGCCUGAUCCAGCAAUGCCGCGU--GCAGGAAGAAGG
CC--UU-CG--GGUU-GU-AAAC-UGCUUUUGUACGGAACGAA-ACGGCUCUUU-CUAAU
A-A-AGAGGG-CUAAUGACGGUACCGUAAG-AAUAAGCACC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGUGC
GCAGGCGGUUAUG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGACAGUUGUGAAAUCCCCGGGCUCAACC-
--------------------------------UGGG-AA-UUGCAUCUGUGACUGCAU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUA--GAGUACGGUA
G-AGGGGGAUGGAA-UUCCGCGUGUAGCAGUGAAAUGCGUAGAUAUGCGGAGGAACACCG
AUGGCGAAGGCAAUCCCCUGGACCUGUACUGACGCUCAUGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCCUAAACGAUGU-CAACUGGUUGUUGGGUG
C-----------------------------------------------------------
----AUUA----------------------------------------------------
----------------------GUACUCAGU-AACGAAGCUAACGC-GUGAAGUU-----
-------GACC-GCCUGGGGAGUACGG-CCGCAAGGU-UGAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GCGGUGGAUGAUGUGGUUUAAUUCGAUGCAACGCGAAAAA-CCUU-
A-CCU-ACCUUUGACAUGUAC-G--G-A-AUUC-GCCA--GAGA---UGGC-U-UAGUGC
----UC-GAAA-GA---GAACCGUA-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCA-UUAGUUGCU-A
-CAU--------------------------------------------------------
------------------------------------------------------------
----------------U-UA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAAUGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-AUAGGUAGGGCUACACACGUCAUAC
AAUG-GCUGGUACAGAGGGU----------------------------------------
----------------------U-GCCAACCCGCGAGGGGGAGCUAA-UCCC--A-UAAA
ACCAGUCGUAGUCCGGAUCGCAGUCUGCAACUCGACUGCGUG-AAGUCGGAAUCGCUAGU
AAUCGCGG-AUCAGA-AUGUCGCGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGU
CACACCAUGGGAG-CGGGUUCU-GCCAGAAGUAGUUAGCCUAACC---------------
----G-CA-A----------------------GGAGGGCG----------AUUACC-ACG
GCAGGGUUCGUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG
AUCACCUCCUUU----------
>Porphyromonas_gingivalis
-----------ACAGUGGAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUAGCGAU-A-G
GC-UUAACACAUGCAAGUCGAGGGGCAGCAU-------GAUCUUAG------CU---U-G
-------CUAAGGUU-------G--A-UG--GC-GAC-CGGCG-CACGGGUGCGUAACGC
GUAUGCAAC-UUGCCUUACAG---------------------AGGGGG-AUAACCC--G-
U-UGAAA-GACGGACUAAAACCGCA-----------------------------------
------------------------------------------------------------
---------UACACUUGUAUUA-UU-----------------------------------
------------------------------------------------------------
----G-CA-U---GAU-AU-UACAAG-GAAA-UA-----------------------U--
U-U-A--------------------UAGCUGUAAGAUAGGCAUGCG-UCCCAUUA-GCUU
--GUUGGUGAGGUAACGGCUCA-CCAAGGCGACGAUGGGU-AGGGGAACUGAGAGGUU-U
AUCCCCCACACUGGUACUGAGACACGGACCAGACUCCUACGG-GAGGCAGCAGUGAGGAA
UAUUGGUCAAUGGGC-GAG----AGCCUGAACCAGCCAAGUCGCGU--GAAGGAAGACAG
UCC-UA-AG--GAUU-GU-AAAC-UUCUUUUAUACGGGAAUAACGGGCGAUA---CG--A
G-----UAUU-GCAUUGAAUGUACCGUAAG-AAUAAGCAUC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGAUGCGAGCGUUAUCCGGAUUUAUUGGGUUUAAAGGGUGC
GUAGGUUGUUCGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGCGGUGAAACCUGAGCGCUCAACG-
--------------------------------UUCA-GC-CUGCCGUUGAAACUGCCG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GAGUUCAGUG
G-CGGCAGGCGGAA-UUCGUGGUGUAGCGGUGAAAUGCAUAGAUAUCACGAGGAACUCCG
AUUGCGAAGGCAGCUUGCCAUACUGCGACUGACACUGAAGCACGAAGGCGUGGGUAUCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCAGUAAACGAUGA-UUACUAGGAGUUUGCGA
------------------------------------------------------------
---UAUAC----------------------------------------------------
----------------------CGUCAAGCU-UCCACAGCGAAAGC-GUUAAGUA-----
-------AUCC-ACCUGGGGAGUACGC-CGGCAACGG-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGAGGAACAUGUGGUUUAAUUCGAUGAUACGCGAGGAA-CCUU-
A-CCC-GGGAUUGAAAUGUAGAU--G-A-CGGA-UGGU--GAAA---ACCG-U-CUUC--
----CC-UUCG-GG-----GCUUCU-AUGUAGG-UGCUGCAUGGUUGUCGUCAGCUCGUG
CC-GUGAGGUGUCGGCUUAAGUGCCAUAACGAGCGCAACCCA-CAUCG-GUAGUUACU-A
ACAG--------------------------------------------------------
------------------------------------------------------------
------------U---U-UU--C---G---------------------------------
------------------------------------------------------------
-------------------------------------------------C----------
--U-G---------AGGACUCUACCGAGACU-GCCG-U----CG--UAAGG-CGUGAGGA
AGGUGUGGAUGACGUCAAAUCAGC-ACGGCCCUU-ACAUCCGGGGCGACACACGUGUUAC
AAUG-GGAGGGACAAAGGGC----------------------------------------
----------------------A-GCUACCGGGCGACCGGAUGCGAA-UCUC--U--AAA
CCCUUCCCCAGUUCGGAUCGGAGUCUGCAACUCGACUCCGUG-AAGCUGGAUUCGCUAGU
AAUCGCGC-AUCAGCCAUGGCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CAAGCCAUGGGAG-UCGGGGGU-ACCUGAAGGGCGUAACC--------------------
----G-CA-A--------------------------GGGG----------CGCACU-AGG
GUAAUACCGGUGACUGGGGCUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AACACCU---------------
>Propionibacterium_acnes
------------------AGAGUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-UUAACACAUGCAAGUCGAACGGAA-AGG---------CCCUGC------UU---U-U
-------GUGGGG------------U-GC--UC-GAG-UGGCG-AACGGGUGAGUAACAC
GUGAGUAAC-CUGCCCUUGAC---------------------UUUGGG-AUAACUU--C-
A-GGAAA-CUGGGGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UAGGA-GCUCCUG-CU-----------------------------------
------------------------------------------------------------
----G-CA-U---GGU-GG-GGGUUG-GAAA-GU-----------------------U--
U-C-G--------------------GCGGUUGGGGAUGGACUCGCG-GCUUAUCA-GCUU
--GUUGGUGGGGUAGUGGCUUA-CCAAGGCUUUGACGGGU-AGCCGGCCUGAGAGGGU-G
ACCGGCCACAUUGGGACUGAGAUACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GGA----AGCCUGAUGCAGCAACGCCGCGU--GCGGGAUGACGG
CC--UU-CG--GGUU-GU-AAAC-CGCUUUCGCCUGUGACGAA-GC---------GU--G
A-----------G--UGACGGUAAUGGGUA-AAGAAGCACC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUGAUACGUAGGGUGCGAGCGUUGUCCGGAUUUAUUGGGCGUAAAGGGCUC
GUAGGUGGUUGAU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CGCGUCGGAAGUGUAAUCUUGGGGCUUAACC-
--------------------------------CUGA-GC-GUGCUUUCGAUACGGGUU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GAGGAAGGUA
G-GGGAGAAUGGAA-UUCCUGGUGGAGCGGUGGAAUGCGCAGAUAUCAGGAGGAACACCA
GUGGCGAAGGCGGUUCUCUGGGCCUUUCCUGACGCUGAGGAGCGAAAGCGUGGGGAGCGA
ACAGGCUUAGAUACCCUG-GUAGUCCACGCUGUAAACGGUGG-GUACUAGGUGUGGGGUC
C-----------------------------------------------------------
--AUUCCAC---------------------------------------------------
----------------------GGGUUCCGU-GCCGUAGCUAACGC-UUUAAGUA-----
-------CCCC-GCCUGGGGAGUACGG-CCGCAAGGC-UAAAACUCAAAGGAAUUGACGG
GGCCCCGC-ACAA-GCGGCGGAGCAUGCGGAUUAAUUCGAUGCAACGCGUAGAA-CCUU-
A-CCU-GGGUUUGACAUGGAUCG--G-G-AGUG-CUCA--GAGA---UGGG-U-GUGCC-
----UC-UUUU-GG----GGUCGGU-UCACAGG-UGGUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUUC-ACUGUUGCC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
------------G---U-UA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--U-G---------GGGACUCAGUGGAGACC-GCCG-G----GGU-CAACU-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGCCCCUU-AUGUCCAGGGCUUCACGCAUGCUAC
AAUG-GCUGGUACAGAGAGU----------------------------------------
----------------------G-GCGAGCCUGUGAGGGUGAGCGAA-UCUC--G-GAAA
GCCGGUCUCAGUUCGGAUUGGGGUCUGCAACUCGACCUCAUG-AAGUCGGAGUCGCUAGU
AAUCGCAG-AUCAGCAACGCUGCGGUGAAUACGUUCCCGGGGCUUGUACACACCGCCCGU
CAAGUCAUGAAAG-UUGGUAAC-ACCCGAAGCCGGUGGCCUAACC---------------
----G-UU-GU---------------------GG-GGGAG----------CCGUCG-AAG
GUGGGACUGGUGAUUAGGACUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUUCUAAGGA---
>Pseudomonas_aeruginosa
--------------------AGUUUGAUCAUG-GCUCAGAUUGA-ACGCUGGCGGC-A-G
GC-CUAACACAUGCAAGUCGAGCGGAU-GAA----------GGGAG------CU---U-G
-------CUCCU-------------G-GA--UU-CAG-CGGCG-GACGGGUGAGUAAUGC
CUAGGA-AU-CUGCCUGGUAG---------------------UGGGGG-AUAACGU--C-
C-GGAAA-CGGGCGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UACGU-CC-------------------------------------------
------------------------------------------------------------
----U-GA-G-------------GGA-GAAA-GUGGGGGAUC---------------U--
U-C-G--------------GACCUCACGCUAUCAGAUGAGCCUAGG-UCGGAUUA-GCUA
--GUUGGUGGGGUAAAGGCCUA-CCAAGGCGACGAUCCGU-AACUGGUCUGAGAGGAU-G
AUCAGUCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGC-GAA----AGCCUGAUCCAGCCAUGCCGCGU--GUGUGAAGAAGG
UC--UU-CG--GAUU-GU-AAAG-CACUUUAAGUUGGGAGGAA-GGGCAGUAAG-UUAAU
A-C-CUUGCU-GUUUUGACGUUACCAACAG-AAUAAGCACC-GGCUA-ACU-UCGUGCCA
GCAGCCGCGGUAAUACGAAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCGC
GUAGGUGGUUCAG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUUGGAUGUGAAAUCCCCGGGCUCAACC-
--------------------------------UGGG-AA-CUGCAUCCAAAACUACUG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUA--GAGUACGGUA
G-AGGGUGGUGGAA-UUUCCUGUGUAGCGGUGAAAUGCGUAGAUAUAGGAAGGAACACCA
GUGGCGAAGGCGACCACCUGGACUGAUACUGACACUGAGGUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGU-CGACUAGCCGUUGGGAU
C-----------------------------------------------------------
---CUUGA----------------------------------------------------
----------------------GAUCUUAGU-GGCGCAGCUAACGC-GAUAAGUC-----
-------GACC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAUGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAA-CCUU-
A-CCU-GGCCUUGACAUGCUG-A--G-A-ACUU-UCCA--GAGA---UGGA-U-UGGUG-
----CC-UUCG-GG----AACUCAG-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGUAACGAGCGCAACCCU-UGUCC-UUAGUUACC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
------------C---U-CG--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------G----------
--U-G---------GGCACUCUAAGGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGGCCCUU-ACGGCCAGGGCUACACACGUGCUAC
AAUG-GUCGGUACAAAGGGU----------------------------------------
----------------------U-GCCAAGCCGCGAGGUGGAGCUAA-UCCC--A-UAAA
ACCGAUCGUAGUCCGGAUCGCAGUCUGCAACUCGACUGCGUG-AAGUCGGAAUCGCUAGU
AAUCGUGA-AUCAGA-AUGUCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUGC-UCCAGAAGUAGCUAGUCUAACC---------------
----G-CA-A----------------------GGGGGACG----------GUUACC-ACG
GAGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUU-----------
>Ralstonia_eutropha
------------------AGAGUUUGAUCCUG-GCUCAGAUUGA-ACGCUGGCGGC-A-U
GC-CUUACACAUGCAAGUCGAACGGCAGCAC-----------GGGC------UU---C-G
-------GCCU-----------G--G-UG--GC-GAG-UGGCG-AACGGGUGAGUAAUAC
AUCGGA-AC-GUGCCCUGUCG---------------------UGGGGG-AUAACUA--G-
U-CGAAA-GAUUAGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UACGA-CC-------------------------------------------
------------------------------------------------------------
----U-GA-G-------------GGU-GAAA-GCGGGGGACCG--------------G--
U-A-A-------------CGGCCUCGCGCGAUAGGAGCGGCCGAUG-UCUGAUUA-GCUA
--GUUGGUGGGGUAAGAGCCUA-CCAAGGCGACGAUCAGU-AGCUGGUCUGAGAGGAC-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUGGACAAUGGGG-GCA----ACCCUGAUCCAGCAAUGCCGCGU--GUGUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CACUUUUGUCCGGAAAGAA-AACCCUUGCC-CUAAU
A-C-GGUGGG-GGGAUGACGGUACCGGAAG-AAUAAGCACC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGUGC
GCAGGCGGUUUUG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGACAGGCGUGAAAUCCCCGGGCUUAACC-
--------------------------------UGGG-AA-UGGCGCUUGUGACUGCAA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GAGUGUGUCA
G-AGGGGGGUAGAA-UUCCACGUGUAGCAGUGAAAUGCGUAGAGAUGUGGAGGAAUACCG
AUGGCGAAGGCAGCCCCCUGGGACAUGACUGACGCUCAUGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCCUAAACGAUGU-CAACUAGUUGUUGGGGA
U-----------------------------------------------------------
----UCAU----------------------------------------------------
----------------------UUCUUCAGU-AACGUAGCUAACGC-GUGAAGUU-----
-------GACC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GCGGUGGAUGAUGUGGAUUAAUUCGAUGCAACGCGAAAAA-CCUU-
A-CCU-ACCCUUGACAUGCCA-C--U-A-ACGA-AGCA--GAGA---UGCAUU-AGGUGC
----CC-GAAA-GG---GAAAGUGG-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCU-CUAGUUGCU-A
-C----------------------------------------------------------
------------------------------------------------------------
----------------G-AA--A-------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----G---------GGCACUCUAGAGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-AUGGGUAGGGCUUCACACGUCAUAC
AAUG-GUGCGUACAGAGGGU----------------------------------------
----------------------U-GCCAACCCGCGAGGGGGAGCCAA-UCCC--A-GAAA
ACGCAUCGUAGUCCGGAUCGUAGUCUGCAACUCGACUACGUG-AAGCUGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUUU-GCCAGAAGUAGUUAGCCUAACC---------------
----G-CA-A----------------------GGAGGGCG----------AUUACC-ACG
GCAGGGUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGUUGG
AUCACCUCCUUGCGGCCGCAUG
>Rhodobacter_sphaeroides
------------------AGAGUUUGAUCCUG-GCUCAGAAUGA-ACGCUGGCGGC-A-G
GC-CUAACACAUGCAAGUCGAGCGAAG-----------------UC------UU---C-G
-------GA----------------------CU-UAG-CGGCG-GACGGGUGAGUAACGC
GUGGGA-AC-AUGCCCAAAGG---------------------UACGGA-AUAGCCC--C-
G-GGAAA-CUGGGAGUAAUACCGUA-----------------------------------
------------------------------------------------------------
---------UGUGC-CC-------------------------------------------
------------------------------------------------------------
----U-UC-G-------------GGG-GAAA-GA-----------------------U--
U-U-A--------------------UCGCCUUUGGAUUGGCCCGCG-UUGGAUUA-GGUA
--GUUGGUGGGGUAAUGGCCUA-CCAAGCCGACGAUCCAU-AGCUGGUUUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UCUUAGACAAUGGGC-GCA----AGCCUGAUCUAGCCAUGCCGCGU--GAUCGAUGAAGG
CC--UU-AG--GGUU-GU-AAAG-AUCUUUCAGGUGGGAAGA-------------UA---
A--------------UGACGGUACCACCAG-AAGAAGCCCC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGGGCUAGCGUUAUUCGGAAUUACUGGGCGUAAAGCGCAC
GUAGGCGGACUGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------AAAGUCAGGGGUGAAAUCCCGGGGCUCAACC-
--------------------------------CCGG-AA-CUGCCUUUGAAACUCCCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GUCUU--GAGGUCGAGA
G-AGGUGAGUGGAA-UUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCA
GUGGCGAAGGCGGCUCACUGGCUCGAUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-AUGCCAGUCGUCGGGCA
G-----------------------------------------------------------
----CAUG----------------------------------------------------
----------------------CUGUUCGGU-GACACACCUAACGG-AUUAAGCA-----
-------UUCC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAA-CCUU-
A-CCA-ACCCUUGACAUGGCG-A--UCG-CGGU-UCCA--GAGA---UGGU-U-CCUUC-
----AG-UUCGGCU----GGAUCGC-ACACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUCGGUUAAGUCCGGCAACGAGCGCAACCCA-CGUCC-UCAGUUGCC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-CA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUGGGGAAACU-GCCG-G----UGA-UAAGC-CG-GAGGA
AGGUGUGGAUGACGUCAAGUCCUC-AUGGCCCUU-ACGGGUUGGGCUACACACGUGCUAC
AAUG-GUCGGGACAGAGGGU----------------------------------------
----------------------C-GCCAACCCGCGAGGGGGAGCCAA-UCCC--A--AAA
AGCUGUCUCAGUUCGGAUUGGGGUCUGCAACUCGACCCCAUG-AAGUCGGAAUCGCUAGU
AAUCGCGU-AACAGC-AUGACGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAA-UUGGUUCU-ACCCGAAGGCGGUGCGCCAACCUC-------------
----G-CA-A-G-------------------AGGAGGCAG----------CCGACC-ACG
GUAGGAUCAGUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUUU----------
>Rhodopirellula_baltica
------------------GGGGUUUGAUCCUG-GCUCAGAAUGA-ACGUUGGCGGC-A-U
GG-AUUAGGCAUGCAAGUCGCACGAGA-AGC--------UGAGUAG------CU---U-G
-------CUACAAA-----------G-CG--GA-CAG-UGGCG-AAAGGGAGAGUAACGU
GUGGUU-AC-GUGCCCUCGAG---------------------ACCGGG-AUAGCGU--C-
G-GGAAA-CUGGCAGUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UAAUA-UC-------------------------------------------
------------------------------------------------------------
----U-AC-G-------------GAU-CAAAUGGUG---------------------A--
G-A--------------------UUCCGCUCGAGGAUUGGACCGCA-UACUAUUA-GCUU
--GUUGGUGAGGUAAUGGCUCA-CCAAGGCUGCGAUGGUU-ACCGGGUGUGAGAGCAU-G
GCCCGGCUCACUGGGACUGAGACACUGCCCAGACACCUACGG-GUGGCUGCAGUCGAGAA
UCUUCGGCAAUGGAC-GAA----AGUCUGACCGAGCGAUGCCGCGU--GCGGGAUGAAGG
CC--CU-CG--GGUU-GU-AAAC-CGCUGUCAGUUGUUAGGAAAUGCAUGGUGG-UU--A
U---CCAUCA-UGUUUGACCGAUCUUCA-G-AGGAAGGACG-GGCUA-AGU-ACGUGCCA
GCAGCCGCGGUAACACGUACCGUCCAAACGUUAUUCGGUAUCACUGGGCUUAAAGCGUUC
GUAGGCGGCCUAG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------AAGGUGAGAUGUGAAAGCCCACGGCUCAACC-
--------------------------------GUGG-AA-UUGCGUUUCAAACCACUA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GAGGAAGACA
G-GGGUGAUGGGAA-CUUAUGGUGGAGCGGUGAAAUGCGUUGAUAUCAUAGGGAACACCG
GUGGCGAAAGCGCAUCACUGGGUCUUUUCUGACGCUGAGGAACGAAAGCUAGGGUAGCGA
ACGGGAUUAGAUACCCCG-GUAGUCCUAGCCGUAAACGAUGA-GCACUAGGCUGAGGGAA
C-----------------------------------------------------------
---UUCCAC---------------------------------------------------
----------------------AUUCUCUCG-GCCGCAGGGAAACC-AUUAAGUG-----
-------CUCC-GCCUGGGGAGUAUGG-UCGCAAGGC-UGAAACUCAAAGGAAUUGACGG
GGGCUCAC-ACAA-GCGGUGGAGGAUGUGGCUUAAUUCGAGGCUACGCGAAGAA-CCUU-
AUCCU-AGACUUGACAUGCUUGA--G---AAUCCCUAU--GAAA---GUAGAG-AGUGC-
----CC-UUCG-GG---GAGCUCUU-GCACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUCGGGUUAAGUCCCUUAACGAGCGAAACCCU-UAUCU-UUAGUUGCC-A
GCGG--------------------------------------------------------
------------------------------------------------------------
------------G---U-AA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GC----------
--C-G---------GGGACUCUAAAGAGACU-GCCG-G----UGU-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCUUU-AUGUCUAGGGCUGCACACGUCCUAC
AAUG-GCACGGACAAACGGA----------------------------------------
----------------------C-GCAAUACCGCGAGGUGGAGCAAA-UCCU--A-GAAA
CCGUGCCUCAGUUCGGAUUGCAGGCUGCAACUCGCCUGCAUG-AAGCCGGAAUCGCUAGU
AAUCGUAG-GUCAGC-AUACUACGGUGAAUGUGUUCCUGAGCCUUGUACACACCGCCCGU
CAAGCCACGAAAG-UUGGGAGG-GCCCGAAGUCACCAAGCUAACCC--------------
----G-CA-A---------------------GGGAGGCAG----------GUGCCG-AAG
GUCAGCUCGACAAUUGGGACUAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCC-------------
>Shewanella_oneidensis
--------------------AGUUUGAUCAUG-GCUCAGAUUGA-ACGCUGGCGGC-A-G
GC-CUAACACAUGCAAGUCGAGCGGCAGCAC--------GAGGGAG------UU---U-A
-------CUCCUGA--------G--G-UG--GC-GAG-CGGCG-GACGGGUGAGUAAUGC
CUAGGG-AU-CUGCCCAGUCG---------------------AGGGGG-AUAACAG--U-
U-GGAAA-CGACUGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UACGC-CC-------------------------------------------
------------------------------------------------------------
----U-AC-G-------------GGG-GAAA-GAGGGGGACU---------------U--
U-C-G--------------GGCCUCUCGCGAUUGGAUGAACCUAGG-UGGGAUUA-GCUA
--GUUGGUGAGGUAAUGGCUCA-CCAAGGCGACGAUCCCU-AGCUGUUCUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGG-GAA----ACCCUGAUGCAGCCAUGCCGCGU--GUGUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CACUUUCAGUAGGGAGGAA-AGGGUAAGUC-CUAAU
A-C-GACUUA-UCUGUGACGUUACCUACAG-AAGAAGGACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUCCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGUGC
GCAGGCGGUUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGCGAGAUGUGAAAGCCCUGGGCUCAACC-
--------------------------------UAGG-AA-UCGCAUUUCGAACUGACC--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AACUA--GAGUCUUGUA
G-AGGGGGGUAGAA-UUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCG
GUGGCGAAGGCGGCCCCCUGGACAAAGACUGACGCUCAUGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGU-CUACUCGGAGUUUGGUG
U-----------------------------------------------------------
---CUUGA----------------------------------------------------
----------------------ACACUGGGC-UCUCAAGCUAACGC-AUUAAGUA-----
-------GACC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAUGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-ACUCUUGACAUCCAC-G--G-A-AGAC-UGCA--GAGA---UGCG-G-UUGUG-
----CC-UUCG-GG----AACCGUG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UU-GUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-UAUCC-UUAUUUGCC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
------------G---U-AA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--U-G---------GGAACUCUAGGGAGACU-GCCG-G----UGA-UAAAC-CG-GAGGA
AGGUGGGGACGACGUCAAGUCAUC-AUGGCCCUU-ACGAGUAGGGCUACACACGUGCUAC
AAUG-GCGAGUACAGAGGGU----------------------------------------
----------------------U-GCAAAGCCGCGAGGUGGAGCUAA-UCUC--A-CAAA
GCUCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGUGG-AUCAGA-AUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGCUGC-AAAAGAAGUGGGUAGCUUAACC---------------
----U-UC-G----------------------GGGGGGCG----------CUCACC-ACU
UUGUGGUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCCCUAGGGGAACCUGGGGCUGG
AUCACCU---------------
>Sinorhizobium_meliloti
-----------CAACUUGAGAGUUUGAUCCUG-GCUCAGAACGA-ACGCUGGCGGC-A-G
GC-UUAACACAUGCAAGUCGAGCGCCC------------------C------GC---A-A
-------G-----------------------GG-GAG-CGGCA-GACGGGUGAGUAACGC
GUGGGA-AU-CUACCCUUUUC---------------------UACGGA-AUAACGC--A-
G-GGAAA-CUUGUGCUAAUACCGUA-----------------------------------
------------------------------------------------------------
---------UGAGC-CC-------------------------------------------
------------------------------------------------------------
----U-UC-G-------------GGG-GAAA-GA-----------------------U--
U-U-A--------------------UCGGGAAAGGAUGAGCCCGCG-UUGGAUUA-GCUA
--GUUGGUGGGGUAAAGGCCUA-CCAAGGCGACGAUCCAU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGC-GCA----AGCCUGAUCCAGCCAUGCCGCGU--GAGUGAUGAAGG
CC--CU-AG--GGUU-GU-AAAG-CUCUUUCACCGGUGAAGA-------------UA---
A--------------UGACGGUAACCGGAG-AAGAAGCCCC-GGCUA-ACU-UCGUGCCA
GCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCAC
GUAGGCGGAUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUGAGGGGUGAAAUCCCAGGGCUCAACC-
--------------------------------CUGG-AA-CUGCCUUUCAUACUGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AUCUA--GAGUCCAGAA
G-AGGUGAGUGGAA-UUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCA
GUGGCGAAGGCGGCUCACUGGUCUGGAACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-AUGUUAGCCGUCGGGCA
G-----------------------------------------------------------
---UUUA-----------------------------------------------------
----------------------CUGUUCGGU-GGCGCAGCUAACGC-AUUAAACA-----
-------UUCC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAA-CCUU-
A-CCA-GCCCUUGACAUCCCG-A--UCG-CGGAUACGA--GAGA---UCGUAU-CCUUC-
----AG-UUCGGCU----GGAUCGG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGCCC-UUAGUUGCC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-CA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAAGGGGACU-GCCG-G----UGA-UAAGC-CGAGAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-ACGGGCUGGGCUACACACGUGCUAC
AAUG-GUGGUGACAGUGGGC----------------------------------------
----------------------A-GCGAGACCGCGAGGUCGAGCUAA-UCUC--C--AAA
AGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUG-AAGUUGGAAUCGCUAGU
AAUCGCAG-AUCAGC-AUGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGUUCU-ACCCGAAGGUAGUGCGCUAACC---------------
----G-CA-A----------------------GGAGGCAG----------CUAACC-ACG
GUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUU-----------
>Staphylococcus_aureus
----------UUUUAUGGAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUGGCGGC-G-U
GC-CUAAUACAUGCAAGUCGAGCGAAC-GGA--------CGAGAAG------CU---U-G
-------CUUCUCU-----------G-AU--GU-UAG-CGGCG-GACGGGUGAGUAACAC
GUGGAUAAC-CUACCUAUAAG---------------------ACUGGG-AUAACUU--C-
G-GGAAA-CCGGAGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UAAUA-UUUUGAA-CC-----------------------------------
------------------------------------------------------------
----G-CA-U---GGU-UC-AAAAGU-GAAA-GACGGU-------------------C--
U-U------------------GCUGUCACUUAUAGAUGGAUCCGCG-CUGCAUUA-GCUA
--GUUGGUAAGGUAACGGCUUA-CCAAGGCAACGAUGCAU-AGCCGACCUGAGAGGGU-G
AUCGGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUAGGGAA
UCUUCCGCAAUGGGC-GAA----AGCCUGACGGAGCAACGCCGCGU--GAGUGAUGAAGG
UC--UU-CG--GAUC-GU-AAAA-CUCUGUUAUUAGGGAAGAACAUAUGUGUAA-GUA-A
C-U-GUGCAC-AUCUUGACGGUACCUAAUC-AGAAAGCCAC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGCGC
GUAGGCGGUUUUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGAUGUGAAAGCCCACGGCUCAACC-
--------------------------------GUGG-AG-GGUCAUUGGAAACUGGAA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AACUU--GAGUGCAGAA
G-AGGAAAGUGGAA-UUCCAUGUGUAGCGGUGAAAUGCGCAGAGAUAUGGAGGAACACCA
GUGGCGAAGGCGACUUUCUGGUCUGUAACUGACGCUGAUGUGCGAAAGCGUGGGGAUCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-GUGCUAAGUGUUAGGGG
G-----------------------------------------------------------
---UUUCC----------------------------------------------------
---------------------GCCCCUUAGU-GCUGCAGCUAACGC-AUUAAGCA-----
-------CUCC-GCCUGGGGAGUACGA-CCGCAAGGU-UGAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAA-CCUU-
A-CCA-AAUCUUGACAUCCUU-U--G-A-CAAC-UCUA--GAGA---UAGA-G-CCUUCC
----CC-UUCG-GG--GGGGCAAAG-UGACAGG-UGGUGCAUGGUUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UAAGC-UUAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAAGUUGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUGCCCCUU-AUGAUUUGGGCUACACACGUGCUAC
AAUG-GACAAUACAAAGGGC----------------------------------------
----------------------A-GCGAAACCGCGAGGUCAAGCAAA-UCCC--A-UAAA
GUUGUUCUCAGUUCGGAUUGUAGUCUGCAACUCGACUACAUG-AAGCUGGAAUCGCUAGU
AAUCGUAG-AUCAGC-AUGCUACGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGU
CACACCACGAGAG-UUUGUAAC-ACCCGAAGCCGGUGGAGUAACCU--------------
----U-UU-----------------------AGGAGCUAG----------CCGUCG-AAG
GUGGGACAAAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG
AUCACCUCCUUUCU--------
>Streptococcus_pneumoniae
---------------------GUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-CUAAUACAUGCAAGUAGAACGCUG-AAG---------GAGGAG------CU---U-G
-------CUUCUC------------U-GG--AU-GAG-UUGCG-AACGGGUGAGUAACGC
GUAGGUAAC-CUGCCUGGUAG---------------------CGGGGG-AUAACUA--U-
U-GGAAA-CGAUAGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UAAGA-GUGGAUG-UU-----------------------------------
------------------------------------------------------------
----G-CA-U---GAC-AU-UUGCUU-AAAA-GGUGC--------------------A--
C-U-U-----------------GCAUCACUACCAGAUGGACCUGCG-UUGUAUUA-GCUA
--GUUGGUGGGGUAACGGCUCA-CCAAGGCGACGAUACAU-AGCCGACCUGAGAGGGU-G
AUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUAGGGAA
UCUUCGGCAAUGGAC-GGA----AGUCUGACCGAGCAACGCCGCGU--GAGUGAAGAAGG
UU--UU-CG--GAUC-GU-AAAG-CUCUGUUGUAAGAGAAGAACGAGUGUGAGA-GUGGA
A-A-GUUCAC-ACUGUGACGGUAUCUUACC-AGAAAGGGAC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGUCCCGAGCGUUGUCCGGAUUUAUUGGGCGUAAAGCGAGC
GCAGGCGGUUAGA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGAAGUUAAAGGCUGUGGCUUAACC-
--------------------------------AUAG-UA-GG-CUUUGGAAACUGUUU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AACUU--GAGUGCAAGA
G-GGGAGAGUGGAA-UUCCAUGUGUAGCGGUGAAAUGCGUAGAUAUAUGGAGGAACACCG
GUGGCGAAAGCGGCUCUCUGGCUUGUAACUGACGCUGAGGCUCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCUGUAAACGAUGA-GUGCUAGGUGUUAGACC
C-----------------------------------------------------------
---UUUCC----------------------------------------------------
---------------------GGGGUUUAGU-GCCGUAGCUAACGC-AUUAAGCA-----
-------CUCC-GCCUGGGGAGUACGA-CCGCAAGGU-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAA-CCUU-
A-CCA-GGUCUUGACAUCCCUCU--G-A-CCGC-UCUA--GAGA---UAGA-G-UUUU--
----CC-UUCG-GG----ACAGAGG-UGACAGG-UGGUGCAUGGUUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-UAUUG-UUAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-CA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAGCGAGACU-GCCG-G----UAA-UAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUGCCCCUU-AUGACCUGGGCUACACACGUGCUAC
AAUG-GCUGGUACAACGAGU----------------------------------------
----------------------C-GCAAGCCGGUGACGGCAAGCUAA-UCUC--U-UAAA
GCCAGUCUCAGUUCGGAUUGUAGGCUGCAACUCGCCUACAUG-AAGUCGGAAUCGCUAGU
AAUCGCGG-AUCAGC-ACGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCACGAGAG-UUUGUAAC-ACCCGAAGUCGGUGAGGUAACC---------------
----G-UA-A----------------------GGAGCCAG----------CCGCCU-AAG
GUGGGAUAGAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG
AUCACCUCCUUUCU--------
>Streptomyces_coelicolor
---------CAUUCACGGAGAGUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-UUAACACAUGCAAGUCGAACGAUG-AAC---------CA---C------UU---C-G
-------G---UG------------G-GG--AU-UAG-UGGCG-AACGGGUGAGUAACAC
GUGGGCAAU-CUGCCCUUCAC---------------------UCUGGG-ACAAGCC--C-
U-GGAAA-CGGGGUCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UACUGACCCUCGC-AG-----------------------------------
------------------------------------------------------------
----G-CA-U---CUG-CG-AGGGUC-GAAA-GC-----------------------U--
C-C-G--------------------GCGGUGAAGGAUGAGCCCGCG-GCCUAUCA-GCUU
--GUUGGUGAGGUAAUGGCUCA-CCAAGGCGACGACGGGU-AGCCGGCCUGAGAGGGC-G
ACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GAA----AGCCUGAUGCAGCGACGCCGCGU--GAGGGAUGACGG
CC--UU-CG--GGUU-GU-AAAC-CUCUUUCAGCAGGGAAGAA-GC---------GA--A
A-----------G--UGACGGUACCUGCAG-AAGAAGCGCC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGCGCAAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUC
GUAGGCGGCUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CACGUCGGUUGUGAAAGCCCGGGGCUUAACC-
--------------------------------CCGG-GU-CUGCAGUCGAUACGGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GAGUUCGGUA
G-GGGAGAUCGGAA-UUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCG
GUGGCGAAGGCGGAUCUCUGGGCCGAUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGGUGG-GCACUAGGUGUGGGCAA
C-----------------------------------------------------------
--AUUCCAC---------------------------------------------------
----------------------GUUGUCCGU-GCCGCAGCUAACGC-AUUAAGUG-----
-------CCCC-GCCUGGGGAGUACGG-CCGCAAGGC-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGCGGAGCAUGUGGCUUAAUUCGACGCAACGCGAAGAA-CCUU-
A-CCA-AGGCUUGACAUACACCG--G-A-AAGC-AUCA--GAGA---UGGU-G-CCC---
----CC-CUUGUGG------UCGGU-GUACAGG-UGGUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCC-CGUGUUGCC-A
GCAA--------------------------------------------------------
------------------------------------------------------------
------------GCCCU-UC--GGGGU---------------------------------
------------------------------------------------------------
------------------------------------------------GU----------
--U-G---------GGGACUCACGGGAGACC-GCCG-G----GGU-CAACU-CG-GAGGA
AGGUGGGGACGACGUCAAGUCAUC-AUGCCCCUU-AUGUCUUGGGCUGCACACGUGCUAC
AAUG-GCCGGUACAAUGAGC----------------------------------------
----------------------U-GCGAUACCGCAAGGUGGAGCGAA-UCUC--A-AAAA
GCCGGUCUCAGUUCGGAUUGGGGUCUGCAACUCGACCCCAUG-AAGUCGGAGUCGCUAGU
AAUCGCAG-AUCAGCAUUGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACGUCACGAAAG-UCGGUAAC-ACCCGAAGCCGGUGGCCCAACCC--------------
----C-UU-GU--------------------GGGAGGGAG----------CUGUCG-AAG
GUGGGACUGGCGAUUGGGACGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUUCU--------
>Symbiobacterium_thermophilum
---------UUUCCACGGAGAGUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-CUAAGACAUGCAAGUCGAGCGGGG-UUU---------CAGGGC------UU---C-G
-------GCCCUG------------A-GA--CC-CAG-CGGCG-GACGGGUGAGUAACAC
GUGGAUAAC-CUGCCCUCUGC---------------------UCUGGG-AUAACAG--G-
C-CGAAA-GGCCUGCUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UAAGCUCACGGAC-CC-----------------------------------
------------------------------------------------------------
----G-CA-U---GGG-UU-UGGGAG-AAAA-GGCGCUGGA----------------G-U
C-A-G---------------UGGCGCUGGCAGAGGAGGGGUCCGCG-GCCCAUUA-GCUG
--GUUGGCGGGGUAACGGCCCA-CCAAGGCGACGAUGGGU-AGCCGGCCUGAGAGGGC-G
ACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUCGGGAA
UUUUGCACAAUGGCC-GAA----AGGCUGAUGCAGCAACGCCGCGU--GAGCGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CUCUGUUGCCUGCGAAGAA-GGGCCCUGUCAGGAAA
---UGGGCGGGGUU-UGACGGUAGCAGGCG-AGGAAGCCCC-GGCAA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGGGCGAGCGUUGUCCGGAAUUACUGGGCGUAAAGGGCGU
GUAGGCGGCCUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGGGGUGAAAGACCGGGGCUCAACC-
--------------------------------CCGG-GG-GUGCCUCUGAAACUGGCG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GAGUGCUCUA
G-AGGGCAGUGGAA-UUCCCGGUGUAGCAGUGAAAUGCGUAGAGAUCGGGAGGAACACCA
GUGGCGAAGGCGGCUGCCUGGGGAGUCACUGACGCUGAGGCGCGAAAGCUAGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCUAGUCGUAAACGAUGA-GCGCUAUGUGUGAGGGG
U-----------------------------------------------------------
--AUCGACC---------------------------------------------------
-----------------------CCCCUCGU-GCAGUAGCUAACGC-AUUAAGCG-----
-------CUCC-GCCUGGGGAGUACGG-CCGCAAGGU-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCAGCGGAGCAUGUGGUUUAAUUCGAAGCAACGCGUAGAA-CCUU-
A-CCA-GGGCUUGACAUCCAC-C--G-A-AUCC-UGCA--GAGA---UGCG-G-GAGUGC
CU--CUCUAAUGAG-AGGAACGGUG-AGACAGG-UGGUGCAUGGUUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-UGUCG-CAUGUUGCC-A
GCGG--------------------------------------------------------
------------------------------------------------------------
------------G---U-AA--A-------------------------------------
------------------------------------------------------------
------------------------------------------------GC----------
--C-G---------GGCACUCAUGCGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUGCCCCUU-AUGUCCUGGGCUACACACGUGCUAC
AAUG-GCCGUCACAGAGCGA----------------------------------------
----------------------G-CCGAACCUGCGAGGGGGAGGGAA-UCGC--A--AAA
GGCGGUCUCAGUUCGGAUCGCAGGCUGCAACUCGCCUGCGUG-AAGUCGGAGUUGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-CUGGCAAC-ACCCGAAGUCGGUGAGCUAACCC--------------
----G-CA-A---------------------GGGAGGCAG----------CCGCCG-AAG
GUGGGGCCGGUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG
AUCACCUCCUUUCUAAG-----
>Synechococcus_sp.
------------------AGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUGGCGGC-G-U
GC-UUAACACAUGCAAGUCGAACGGAC------------------C------UU---U-U
-------CG----------------G-AG--GU-UAG-UGGCG-GACGGGUGAGUAACGC
GUGAGG-AU-CUGCCUAUAGG---------------------AUGGGG-ACAACAG--G-
G-AGAAA-UUCCUGCUAACACCCGA-----------------------------------
------------------------------------------------------------
---------UGUG-CC--------------------------------------------
------------------------------------------------------------
----G-AG-A-------------GGU-GAAA-UA-----------------------U--
U-A-A--------------------UAGCCUGUAGAUGAGCUCGCG-UCUGAUUA-GCUA
--GUUGGUGGGGUAAAGGCUUA-CCAAGGCGACGAUCAGU-AGCUGGUCUGAGAGGAC-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUCCGCAAUGGGC-GCA----AGCCUGACGGAGCAACGCCGCGU--GAGGGAGGAAGG
CC--UG-UG--GGUU-GU-AAAC-CUCUUUUCUCAGGGAAGA-------------AGAUU
C--------------UGACGGUACCUGAGG-AAUCAGCAUC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAGACGGAGGAUGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGUCC
GUAGGCGGUUUAG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------AAAGUCAGUUGUUAAAGCCCACAGCUCAACU-
--------------------------------GUGG-AU-GGGCAAUUGAAACUACUA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUA--GAGAGUGGUA
G-GGGUAGAGGGAA-UUCCUAGUGUAGCGGUGAAAUGCGUAGAUAUUAGGAAGAACACCA
GUGGCGAAGGCGCUCUACUGGGCCAUUACUGACGCUGAUGGACGAAAGCUAGGGGAGCGA
AAGGGAUUAGAUACCCCU-GUAGUCCUAGCUGUAAACGAUGG-ACACUAGGUGUUGCGCG
U-----------------------------------------------------------
--AUCGACC---------------------------------------------------
-----------------------CGUGCAGU-AUCGAAGCAAACGC-GUUAAGUG-----
-------UCCC-GCCUGGGGAGUACGC-ACGCAAGUG-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGUAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCA-GGGAUUGACAUCCUA-C--G-A-AGAC-UUUU--GAAA---GAGA-G-UUGUG-
----CC-UUCG-GG----AACGUAG-AGACAGG-UGGUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUCC-UUAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUUUAAGGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGCCCCUU-ACAUCCUGGGCUACACACGUACUAC
AAUG-CAACGGACAAAGGGC----------------------------------------
----------------------A-GCCAACUAGCGAUAGUGAGCUAA-UCCC--A-UAAA
CCGUUGCUCAGUUCAGAUUGCAGGCUGCAACUCGCCUGCAUG-AAGGCGGAAUCGCUAGU
AAUCGCAG-GUCAGC-AUACUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGAAG-UUGGCCAC-GCCCGAAGUCGUUACCCCAACC---------------
----C-UU-GU---------------------GGAGGGGG----------ACGCCG-AAG
GCAGGGCUGAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGUGGCUG-
----------------------
>Synechocystis_sp.
-----------ACAAUGGAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUGGCGGU-A-U
GC-CUAACACAUGCAAGUCGAACGGAG----------------UUC------UU---C-G
-------GAA---------------------CU-UAG-UGGCG-GACGGGUGAGUAACAC
GUGAGA-AC-CUACCUUCAGA---------------------AUGGGG-ACAACAG--U-
U-GGAAA-CGACUGCUAAUACCCAA-----------------------------------
------------------------------------------------------------
---------UGUG-CC--------------------------------------------
------------------------------------------------------------
----G-AA-A-------------GGU-GAAA-GA-----------------------U--
U-U-A--------------------UCGUCUGAAGAUGGGCUCGCG-UCUGAUUA-GCUA
--GAUGGUGGGGUAAGAGCCUA-CCAUGGCAACGAUCAGU-AGCUGGUCUGAGAGGAU-G
AGCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUCCGCAAUGGGC-GAA----AGCCUGACGGAGCAAUACCGCGU--GAGGGAGGAAGG
UC--CU-UG--GAUU-GU-AAAC-CUCUUUUAUCAGGGAAGA-------------AGU-U
C--------------UGACGGUACCUGAUG-AAUAAGCAUC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGAUGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGUCC
GUAGGUGGUUAUG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCUGCCGUUAAAGAAUGGAGCUUAACU-
--------------------------------CCAU-AG-GAGCGGUGGAAACUGCAA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUA--GAGUACAGUA
G-GGGUAGCAGGAA-UUCCCAGUGUAGCGGUGAAAUGCGUAGAUAUUGGGAAGAACAUCG
GUGGCGAAAGCGUGCUACUGGGCUGAAACUGACACUGAGGGACGAAAGCUAGGGUAGCGA
AAGGGAUUAGAUACCCCU-GUAGUCCUAGCCGUAAACGAUGG-AUACUAGGCGUGGCUUG
U-----------------------------------------------------------
--AUCGACC---------------------------------------------------
-----------------------CGAGCCGU-GCCGAAGCUAACGC-GUUAAGUA-----
-------UCCC-GCCUGGGGAGUACGC-ACGCAAGUG-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGUAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCA-AGGCUUGACAUCCCU-G--G-A-AUCC-UGCG--GAAA---CGUG-G-GAGUG-
----CC-UUAG-GG----AGCCAGG-AGACAGG-UGGUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUUU-UUAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAGAGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGCCCCUU-ACGCCUUGGGCUACACACGUACUAC
AAUG-GUCGGGACAACGGGC----------------------------------------
----------------------A-GCGAGCUCGCGAGAGUAAGCGAA-UCCC--AUCAAA
CCCGGCCUCAGUUCAGAUUGCAGGCUGCAACUCGCCUGCAUG-AAGGAGGAAUCGCUAGU
AAUCGCAG-GUCAGA-AUACUGCGGUGAAUUCGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-CUGGUCAC-GCCCGAAGUCGUUACUCUAACC---------------
----U-UA-G----------------------GGAGGAGG----------GCGCCG-AAG
GCAGGGCUAGUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGUGGCUGG
AUCACCUCCUUU----------
>Thermoanaerobacter_tengcongensis
-----------------GAGAGUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-CUAACACAUGCAAGUCGAGCGGGC-CUG-------UCAAGGCG------UU-----A
-------UGUUUUGG----------C-AG--GUUAAG-CGGCG-GACGGGUGAGUAACGC
GUGAGCAAC-CUACCCUUGAG---------------------ACAGGG-AUAACCC--U-
G-GGAAA-CCGGGGCUAAUACCUGA-----------------------------------
------------------------------------------------------------
---------UAUACUCUAUU-A-GG-----------------------------------
------------------------------------------------------------
----G-CA-U---CCU-G--AUGGAG-GAAAGGGC----------------------G--
G-G-AA------------------GCCGCUCAAGGAUGGGCUCGCG-UCCCAUCA-GCUA
--GUUGGUGAGGUAACGGCUCA-CCAAGGCUACGACGGGU-AGCCGGCCUGAGAGGGU-G
GUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UCUUCCGCAAUGGGC-GAA----AGCCUGACGGAGCGACGCCGCGU--GAGCGAAUAAGG
CC--UU-CG--GGUC-GU-AAAG-CUCGAUAGUGUGGGAAGA-------------AGG-G
A--------------UGACGGUACCACACG-A--AAGCCCC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAGACGUAGGGGGCGAGCGUUGUCCGGAGUUACUGGGCGUAAAGGGCGC
GUAGGCGGUUUAG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCAGGUGUAAAAGGCCACGGCUCAACC-
--------------------------------GUGG-AU-AUGCAUCUGAAACUGCUG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUA--GAGGGCAGGA
G-AGGGGAGUGGAA-UUCCCGGUGUAGCGGUGAAAUGCGUAGAUAUCGGGAGGAAUACCA
GUGGCGAAGGCGACUCCCUGGACUGGCCCUGACGCUGAGGCGCGAGAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCUGUAAACGAUGG-GUGCUAGGUGUGGGGAG
C-----------------------------------------------------------
----GGAA----------------------------------------------------
----------------------GCUUUCCGU-GCCGUAGGAAACCC-AAUAAGCA-----
-------CCCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAA-CCUU-
A-CCA-GGGCUUGACAUGCAGGU--G-G-UAGCGACCC--GAAA---GGGAAG-CGACCC
UA--CCGGUA-AGG-UAGGGAGCCU-GCACAGG-UGGUGCAUGGUUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-UGCCU-CUAGUUGCC-A
GCGG--------------------------------------------------------
------------------------------------------------------------
------------G---U-GA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GC----------
--C-G---------GGCACUCUAGAGGGACU-GCCG-U----CGA-UAAGA-CG-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUGCCCUAU-AUGCCCUGGGCCACACACGUGCUAC
AAUG-GCCGGUACAGAGGGA----------------------------------------
----------------------A-GCGAAGGAGUGAUCUGGAGCGAA-UCCC--A-AAAA
GCCGGUCUCAGUUCGGAUUGCAGGCUGCAACUCGCCUGCAUG-AAGGCGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUGCGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCACGAGAG-UCUGCAAC-ACCCGAAGCCGGUGGCCCAACCC--------------
----G-AAGA---------------------GGGAGGGAG----------CCGUCG-AAG
GUGGGGCAGAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUACGGGAACGUGCGGCUGG
AUCACCUCCUU-----------
>Thermosynechococcus_elongatus
-----------AAAAUGGAGAGUUUGAUCCUG-GCUCAGGAUGA-ACGCUGGCGGU-C-U
GC-UUAACACAUGCAAGUCGAACGAGC-----------------AC------UU---C-G
-------GU----------------------GC-UAG-UGGCG-GACGGGUGAGUAACAC
GUGAGA-AU-CUACCCUCAGG---------------------AGGGGG-AUAACGG--C-
U-GGAAA-CGGCCGCUAAUACCCCA-----------------------------------
------------------------------------------------------------
---------UAUG-CC--------------------------------------------
------------------------------------------------------------
----G-CA-A-------------GGU-GAAAUCUU----------------------U--
U-U----------------------UGGCCUGGGGAUGAGCUCGCG-GUGGAUUA-GCUA
--GUUGGUGGGGUAAUGGCCUA-CCAAGGCGACGAUCCAU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UUUUCCGCAAUGGGC-GAA----AGCCUGACGGAGCAAGACCGCGU--GAGGGAUGAAGG
CC--UU-UG--GGUU-GU-AAAC-CUCUUUUCUCAGGGAAGA-------------ACACA
A--------------UGACGGUACCUGAGG-AAUAAGCCUC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAGACGGAGGAGGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGUCC
GCAGGUGGCUUUC-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCUGCCGUCAAAGCCCGAGGCUUAACC-
--------------------------------UCGG-AU-CGGCGGUGGAAACUGGAU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------CGCUA--GAGUGCGUCA
G-GGGUAGGGGGAA-UUCCCGGUGUAGCGGUGAAAUGCGUAGAUAUCGGGAAGAACACCA
GUGACGAAAGUGCCCUACUGGGACGUUACUGACACUCAUGGACGAAAGCUAGGGGAGCGA
AAGGGAUUAGAUACCCCU-GUAGUCCUAGCCGUAAACGAUGG-ACACUAGGUGUUGCUGG
U-----------------------------------------------------------
---AUCCAC---------------------------------------------------
----------------------UCCAGCAGU-GCCGUAGCCAACGC-GUUAAGUG-----
-------UCCC-GCCUGGGGAGUACGC-ACGCAAGUG-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGUAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCA-GGGCUUGACAUGUCG-C--G-A-AUCC-CGCG--GAAA---CGUG-G-GAGUG-
----CC-UUCG-GG----AACGCGA-ACACAGG-UGGUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUCC-UUAGUUGCC-A
GCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-CA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUCUAGGGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGCCCCUU-ACGUCCUGGGCUACACACGUACUAC
AAUG-CUGUGGACAAAGAGU----------------------------------------
----------------------U-GCCAACCCGCGAGGGCGAGCUAA-UCUC--U-UAAA
CCACGGCUCAGUUCAGAUUGCAGGCUGCAACUCGCCUGCAUG-AAGGCGGAAUCGCUAGU
AAUCGCAG-GUCAGC-AUACUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGCCAU-GCCCGAAGUCGUUACUCUAACCC--------------
----G-CA-A---------------------GGGAGGGGG----------ACGCCU-AAG
GCAGGGCUGAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGUGGCUGG
AUCACCUCCUUUU---------
>Thermotoga_maritima
-----------UAUAUGGAGGGUUUGAUCCUG-GCUCAGGGUGA-ACGCUGGCGGC-G-U
GC-CUAACACAUGCAAGUCGAGCGGGGGAAA-C-------U--CCC------UU---C-G
-------GGGAGG---------A--G-UA--CC-CAG-CGGCG-GACGGGUGAGUAACAC
GUGGGUAAC-CUGCCCUCCGG---------------------AGGGGG-AUAACCA--G-
G-GGAAA-CCCUGGUUAAUACCCCA-----------------------------------
------------------------------------------------------------
---------UACGCUCCAUC-A-AC-----------------------------------
------------------------------------------------------------
----G-CA-A---GUU--G-GUGGAG-GAAA-GGGGC--------------------G--
U-U-U-----------------GCCCCGCCGGAGGAGGGGCCCGCG-GCCCAUCA-GGUA
--GUUGGUGGGGUAACGGCCCA-CCAAGCCGACGACGGGU-AGCCGGCCUGAGAGGGU-G
GUCGGCCACAGGGGCACUGAGACACGGGCCCCACU-CUACGG-GAGGCAGCAGUGGGGAA
UCUUGGACAAUGGGG-GAA----ACCCUGAUCCAGCGACGCCGCGU--GCGGGACGAAG-
CC--UU-CG--GGGU-GU-AAAC-CGCUGUGGCGGGGGAAGAAUAAGGUAGGGA-GGA-A
A-U-GCCCUA-CCGAUGACGGUACCCCGCU-AGAAAGCCCC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGGGCAAGCGUUACCCGGAUUUACUGGGCGUAAAGGGGGC
GUAGGCGGCCUGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UGUGUCGGAUGUGAAAUCCCACGGCUCAACC-
--------------------------------GUGG-GG-CUGCAUCCGAAACUACCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GGGGGCGGUA
G-AGGGAGACGGAA-CUGCCGGUGUAGGGGUGAAAUCCGUAGAUAUCGGCAGGAACGCCG
GUGGGGAAGCCGGUCUCCUGGGCCGACCCCGACGCUGAGGCCCGAAAGCCAGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCUGUAAACGAUGC-CCACUAGGUGUGGGGGG
G-----------------------------------------------------------
----UAA-----------------------------------------------------
----------------------UCCCUCCGU-GCUGAAGCUAACGC-GUUAAGUG-----
-------GGCC-GCCUGGGGAGUACGC-CCGCAAGGG-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCGUGUGGUUUAAUUGGAUGCUAAGCCAAGAA-CCUU-
A-CCA-GGGCUUGACAUGCCGGU--G-GUACCU-CCCC--GAAA---GGGGUA-GGGACC
CAGUCC-UUCG-GGACUGGGAGCCG-GCACAGG-UGGUGCACGGCCGUCGUCAGCUCGUG
CC-GUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-UGCCC-CUAGUUGCC-A
GCGG--------------------------------------------------------
------------------------------------------------------------
----------------U-UC--GG------------------------------------
------------------------------------------------------------
-------------------------------------------------C----------
--C-G---------GGCACUCUAGGGGGACU-GCCG-G----CGA-CGAGC-CG-GAGGA
AGGAGGGGAUGACGUCAGGUACUC-GUGCCCCUU-AUGCCCUGGGCGACACACGCGCUAC
AAUG-GGCGGUACAAUGGGU----------------------------------------
----------------------U-GCGACCCCGCGAGGGGGAGCCAA-UCCC----CAAA
GCCGCCCUCAGUUCGGAUCGCAGGCUGCAACCCGCCUGCGUG-AAGCCGGAAUCGCUAGU
AAUCGCGG-AUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACGCCACCCGAG-UCGGGGGC-UCCCGAAGACACCUACCCCAACCC-------------
----G-AA-A--------------------GGGAGGGGGG----------GUGUCG-AGG
GAGAACCUGGCGAGGGGGGCGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUUC---------
>Thermus_thermophilus
-----------UUGUUGGAGAGUUUGAUCCUG-GCUCAGGGUGA-ACGCUGGCGGC-G-U
GC-CUAAGACAUGCAAGUCGUGCGGGC-CGC----------GGGGU------UU---U--
-------ACUCC-------------G-UG--GU-CAG-CGGCG-GACGGGUGAGUAACGC
GUGGGUGAC-CUACCCGGAAG---------------------AGGGGG-ACAACCC--G-
G-GGAAA-CUCGGGCUAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UGUGGACCCG--C-CC-----------------------------------
------------------------------------------------------------
----C-UU-G-------GGGUGUGUC-CAAA-GGGC---------------------U--
U-U--------------------GCCCGCUUCCGGAUGGGCCCGCG-UCCCAUCA-GCUA
--GUUGGUGGGGUAAUGGCCCA-CCAAGGCGACGACGGGU-AGCCGGUCUGAGAGGAU-G
GCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGG-GAGGCAGCAGUUAGGAA
UCUUCCGCAAUGGGC-GCA----AGCCUGACGGAGCGACGCCGCUU--GGAGGAAGAAGC
CC--UU-CG--GGGU-GU-AAAC-UCCUGAA-CCCGGGACGAA-ACCCCC-----GAC-G
A-------GG-GGACUGACGGUACCGGGGU-AAU-AGCGCC-GGCCA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGU
GUAGGCGGCCUGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------GGCGUCCCAUGUGAAAGACCACGGCUCAACC-
--------------------------------GUGG-GG-GAGCGUGGGAUACGCUCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GACGGUGGGA
G-AGGGUGGUGGAA-UUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCG
AUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCACGCCCUAAACGAUGC-GCGCUAGGUCUCUGGG-
------------------------------------------------------------
----UCU-----------------------------------------------------
------------------------CCUGGGG-GCCGAAGCUAACGC-GUUAAGCG-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAA-CCUU-
A-CCA-GGCCUUGACAUGCUAGG--G-A-ACCC-GGGU--GAAA---GCCU-G-GGGUGC
C---CC-GCGA-GG--GGAGCCCUA-GCACAGG-UGCUGCAUGGCCGUCGUCAGCUCGUG
CC-GUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-CGCCG-UUAGUUGCC-A
GCGG--------------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
------------------------------------------------GC----------
--C-G---------GGCACUCUAACGGGACU-GCCC-G----CGA--AAGC-GG-GAGGA
AGGAGGGGACGACGUCUGGUCAGC-AUGGCCCUU-ACGGCCUGGGCGACACACGUGCUAC
AAUG-CCCACUACAAAGCGA----------------------------------------
----------------------U-GCCACCCGGCAACGGGGAGCUAA-UCGC--A-AAAA
GGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUG-AAGCCGGAAUCGCUAGU
AAUCGCGG-AUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACGCCAUGGGAG-CGGGCUCU-ACCCGAAGUCGCCGGG-AG-CC---------------
----U-AC-G----------------------GG---CAG----------GCGCCG-AGG
GUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUU----------
>Treponema_pallidum
-----------UUGUUGGAGAGUUUGAUCCUG-GCUCAGAACGA--CGCUGGCGG----U
GCGUUUUAGCAUGCAAGUCGAACGGCAAGGA----------AGCGA------AU---U-U
-------UCGUU----------U--C-UC--UA-GAG-UGGCG-GACUGGUGAGUAACGC
GUGGGUAAU-CUGCCUUUGAG---------------------AUGGGG-AUAGCCU--C-
U-AGAAA-UAGGGGGUAAUACCGAA-----------------------------------
------------------------------------------------------------
---------UACGCUCUUUUGG-AC-----------------------------------
------------------------------------------------------------
----G-UA-G---UCU--U-UGAGAG-GAAA-GGGGC--------------------U--
G-C-G-----------------GCCUCGCUCAGAGAUGAGCCUGCG-ACCCAUUA-GCUU
--GUUGGUGGGGUAAUGGCCUA-CCAAGGCGUCGAUGGGU-AUCCGACCUGAGAGGGU-G
ACCGGACACACUGGGACUGAGAUACGGCCCAGACUCCUACGG-GAGGCAGCAGCUAAGAA
UAUUCCGCAAUGGGC-GAA----AGCCUGACGGAGCGACACCGCGU--GGAUGAGGAAGG
UC--GA-AA--GAUU-GU-AAAG-UUCUUUUGCCGACGAAGAAUGAGGACGGGA-GGG-A
A-U-GCCCGU-UUGAUGACGGUAGUCGUGCGAAUAAGCCCC-GGCUA-AUU-ACGUGCCA
GCAGCCGCGGUAACACGUAAGGGGCGAGCGUUGUUCGGAAUUAUUGGGCGUAAAGGGCAU
GCAGGCGGACUGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGCCUGGUGUGAAAUCCCCGAGCUCAACU-
--------------------------------UGGG-AA-CUGCACUGGGUACUGCUG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GUCUA--GAAUCACGGA
G-GGGAAACCGGAA-UUCCAAGUGUAGGGGUGGAAUCUGUAGAUAUUUGGAAGAACACCG
GUGGCGAAGGCGGGUUUCUGGCCGAUGAUUGACGCUGAGGUGCGAAGGUGUGGGGAGCGA
ACAGGAUUAGAUACCCUG-GUAGUCCACACAGUAAACGAUGU-ACACUAGGUGUUGGGGC
------------------------------------------------------------
----AUGA----------------------------------------------------
-----------------------GUCUCGGC-GCCGACGCGAACGC-AUUAAGUG-----
-------UACC-GCCUGGGGAGUAUGC-UCGCAAGAG-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGAUACGCGAGGAA-CCUU-
A-CCC-GGGUUUGACAUCAAGAG--G-A-GCGC-CGUA--GAAA---UGCG-G-UGGCG-
----UA-GCGA-UA----CGCCUCU-UGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
CC-GUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCC-UACUG-CCAGUUGCC-A
GCAA--------------------------------------------------------
------------------------------------------------------------
------------G---U-GG--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GU----------
--U-G---------GGGACUCUGGCGGAACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGGCCCUU-AUGUCCGGGGCUACACACGUGCUAC
AAUG-GUUGCUACAGAGCGA----------------------------------------
----------------------U-GCGAGGUUGUGAAGUGGAGCAAA-CCGC--A-AAAA
GGCAAUCGUAGUCCGGAUUGAAGUCUGAAACUCGACUUCAUG-AAGUUGGAAUCGCUAGU
AAUCGCAC-AUCAGC-AUGGUGCGGUGAAUGUGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUCCGAG-UUGGAGAU-ACCCGAAGUCACUAGCCUAACCC--------------
----G-CA-A---------------------GGGAGGGCG----------GUGCCG-AAG
GUAUGUUUGGUAAGGAGGGUGAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUUCUAAGAGA--
>Tropheryma_whipplei
---------UUAUUAUGGAGAGUUUGAUCCUG-GCUCAGGACGA-ACGCUGGCGGC-G-U
GC-UUAACACAUGCAAGUCGAACGGAA-AUC---------AGGGAG------CU---U-G
-------CUCCCU------------G-UG--AU-UAG-UGGCG-AACGGGUGAGUAACAC
GUGAGCAAC-CUGCCCCUAAC---------------------UUUGGG-AUAACUU--C-
G-GGAAA-CCGGGGCUAAUACCAAA-----------------------------------
------------------------------------------------------------
---------UACGA-CCCAUGA-GG-----------------------------------
------------------------------------------------------------
----G-CA-U---CCUCUG-UGGGUG-GAAA-GA-----------------------A--
U-U----------------------UCGGUUGGGGAUGGGCUCGCG-GCCUAUCA-GCUU
--GUUGGUGGGGUAACGGCCUA-CCAAGGCAUCGACGGGU-AGCCGGCCUGAGAGGGU-G
AUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GCA----AGCCUGAUGCAGCAACGCCGCGU--GGGGGAAGAAGG
CC--UU-CG--GGUU-GU-AAAC-CUCUUUUGGCAGGGAAGAA-GC---------GA--A
A-----------G--UGACGGUACCUGCAG-AAAAAGCGCC-GGCUA-ACU-ACGUGCCA
GCAGCCGCGGUAAUACGUAGGGCGCGAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUC
GUAGGCGGUUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CACGUCUGCCGUGAAAAUCCGAGGCUCAACC-
--------------------------------UCGG-AC-CUGCGGUGGGUACGGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GAGUGCGAUA
G-GGGAGAGCGGAA-UUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCG
AUGGCGAAGGCAGCUCUCUGGGUCGCUACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGUUGG-GCGCUAGACGUGGGGGU
G-----------------------------------------------------------
--GUUCCAC---------------------------------------------------
----------------------CGCUUCCGU-GUCGCAGCUAACGC-AUUAAGCG-----
-------CCCC-GCCUGGGGAGUACGG-CCGCAAGGC-UAAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGCGGAGCAUGCGGAUUAAUUCAAUGCAACGCGAAGAA-CCUU-
A-CCA-AGGCUUGAUAUAUACCG--G-A-AAGG-CGUA--GAGA---UACG-C-CCC---
----CC-GCAA-GG------UCGGU-AUACAGG-UGGUGCACGGUUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CGUCC-UGUGUUGCC-A
GCGC--------------------------------------------------------
------------------------------------------------------------
------------G---U-AA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--C-G---------GGGACUCACAGGAGACU-GCCG-G----GGU-CAACU-CG-GAGGA
AGGUGGGGAUGACGUCAAAUCAUC-AUG-CCCUU-CGGUCUUGGGCUUCACGCGUGCUAC
AAUG-GCUGGUACAGAGGGU----------------------------------------
----------------------U-GCAAUAUCGCAAGGUGGAGCGAA-UCUC--A-AAAA
GCCAGUCUCAGUUCGGAUUGGGGUCUGCAACUCGACCCCAUG-AAGUCGGAGUCGCUAGU
AAUCGCAG-AUCAGCAAUGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CAAGUCAUGAAAG-CUGGUAAC-ACCCGAAGCCGGUGACUUAACC---------------
----U-UU-UU---------------------GGAGAGAG----------CCGUCG-AAG
GUGGGAUUGGUGAUUGGGACUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGG
AUCACCUCCUUUCU--------
>Vibrio_cholerae
------------------AGAGUUUGAUCAUG-GCUCAGAUUGA-ACGCUGGCGGC-A-G
GC-CUAACACAUGCAAGUCGAGCGGCAGCAC--------AGAGGAA------CU---U-G
-------UUCCUUG--------G--G-UG--GC-GAG-CGGCG-GACGGGUGAGUAAUGC
CUGGGA-AA-UUGCCCGGUAG---------------------AGGGGG-AUAACCA--U-
U-GGAAA-CGAUGGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UAACC-UC-------------------------------------------
------------------------------------------------------------
----G-CA-A-------------GAG-CAAA-GCAGGGGACC---------------U--
U-C-G--------------GGCCUUGCGCUACCGGAUAUGCCCAGG-UGGGAUUA-GCUA
--GUUGGUGAGGUAAGGGCUCA-CCAAGGCGACGAUCCCU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GCA----AGCCUGAUGCAGCCAUGCCGCGU--GUAUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-UACUUUCAGUAGGGAGGAA-GGUGGUUAAG-UUAAU
A-C-CUUAAU-CAUUUGACGUUACCUACAG-AAGAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCAU
GCAGGUGGUUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGAUGUGAAAGCCCUGGGCUCAACC-
--------------------------------UAGG-AA-UCGCAUUUGAAACUGACA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUA--GAGUACUGUA
G-AGGGGGGUAGAA-UUUCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGAAGGAAUACCG
GUGGCGAAGGCGGCCCCCUGGACAGAUACUGACACUCAGAUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGU-CUACUUGGAGGUUGUGC
C-----------------------------------------------------------
---CUAGA----------------------------------------------------
----------------------GGUGUGGCU-UUCGGAGCUAACGC-GUUAAGUA-----
-------GACCCGCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAUGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-ACUCUUGACAUCCAG-A--G-A-AUCU-AGCG--GAGA---CGCU-G-GAGUG-
----CC-UUCG-GG----AGCUCUG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UU-GUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UAUCC-UUGUUUGCC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
------------G---U-AA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--U-G---------GGAACUCCAGGGAGACU-GCCG-G----UGA-UAAAC-CG-GAGGA
AGGUGGGGACGACGUCAAGUCAUC-AUGGCCCUU-ACGAGUAGGGCUACACACGUGCUAC
AAUG-GCGUAUACAGAGGGC----------------------------------------
----------------------A-GCGAUACCGCGAGGUGGAGCGAA-UCUC--A-CAAA
GUACGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGCAA-AUCAGA-AUGUUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGCUGC-AAAAGAAGCAGGUAGUUUAACC---------------
----U-UC-G----------------------GGAGGACG----------CUUGCC-ACU
UUGUGGUUCAUGACUGGGGUGAAGUCGUAACAAGGUAGCGCUAGGGGAACCUGGCGCUGG
AUCACCUCCUU-----------
>Wolbachia_endosymbiont
GGUUAAAGUCUAAAUUUGAGAGUUUGAUCCUG-GCUCAGAAUGA-ACGCUGGCGGC-A-G
GC-CUAACACAUGCAAGUUGAACGGAG-UUA-------UAUUAUAA------CG---A-G
-------UUAUAGUA----------U-AA--CU-GAG-UAGCA-GACGGGUGAGUAAUGU
AUAGGA-AU-CUACCUAGUAG---------------------UACGGA-AUAAUUG--U-
U-GGAAA-CGGCAACUAAUACCGUA-----------------------------------
------------------------------------------------------------
---------UACGC-CC-------------------------------------------
------------------------------------------------------------
----U-AC-G-------------GGG-GAAA-GA-----------------------U--
U-U-A--------------------UUGCUAUUAGAUGAGCCUAUA-UUAGAUUA-GCUA
--GUUGGUAGGGUAAUGGCCUA-CCAAGGCAGUAAUCUAU-AGCUGAUCUGAGAGGAU-G
AUCAGCCACACUGGAACUGAGAUACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGC-GAA----AGCCUGAUCCAGCCAUGCCGCAU--GAGUGAAGAAGG
CC--UU-UG--GGUU-GU-AAAG-CUCUUUCAGUGAGGAAGA-------------UA---
A--------------UGACGGUACUCACAG-AAGAAGUCCU-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGAGGGCUAGCGUUAUUCGGAAUUAUUGGGCGUAAAGGGCGC
GUAGGCUGAUUAG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUUAAAAGUGAAAUCCCAAAGCUUAACU-
--------------------------------UUGG-AA-UUGCUUUUAAAACUGUUA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AUCUA--GAGGUUGAAA
G-AGGAUAGAGGAA-UUCCUAGUGUAGAGGUGAUAUUCGUAAAUAUUAGGAGGAACACCA
GUGGCGAAGGCGUCUAUCUGGUUCAAAUCUGACGCUGAGGCGCGAAGGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCUGUAAACGAUGA-AUGUUAAAUAUGGGAAG
------------------------------------------------------------
---UUU-A----------------------------------------------------
-----------------------CUUUCUGU-AUUACAGCUAACGC-GUUAAACA-----
-------UUCC-GCCUGGGGACUACGA-UCGCAAGAU-UAAAACUCAAAGGAAUUGACGG
GGACCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAAAA-CCUU-
A-CCA-CUCCUUGACAUGGGA-A--UUA-UUCCUAUUC--GAAG---GAAUAG-GG-UC-
----GG-UUCGGCC----GAAUUUC-ACACAGG-UGUUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGUAACCCU-CAUCC-UUAGUUACC-A
UCAGG-------------------------------------------------------
------------------------------------------------------------
------------U---A-AU--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------C----------
--U-G---------GGGACUUUAAGGAAACU-GCUA-G----UGA-UAAAC-UG-GAGGA
AGGUGGGGAUGAUGUCAAGUCAUC-AUGGCCCUU-AUGGAGUGGGCUACACACGUGCUAC
AAUG-GUGGCUACAAUGGGC----------------------------------------
----------------------U-GCAAAGUCGCGAGGCCAAGCUAA-UCCC--U-UAAA
AGCCAUCUCAGUUCGGAUUGUACUCUGCAACUCGAGUGCAUG-AAGUUGGAAUCGCUAGU
AAUCGUGG-AUCAGC-AUGCCACGGUGAAUACGUUCUCGGGUCUUGUACACACUGCCCGU
CACGCCAUGGGAA-UUGGUUUC-ACUCGAAGCUAAUGACCUAACC---------------
----G-UA-A----------------------GGAGGGAG----------UUAUUU-AAA
GUGGGAUCAGUGACUGGGGUGAAGUCGUAACAAGGUAGCAGUAGGGGAAUCUGCAGCUGG
AUUACCUCCUUG----------
>Xanthomonas_axonopodis
-----------UAAGUGAAGAGUUUGAUCCUG-GCUCAGAGUGA-ACGCUGGCGGC-A-G
GC-CUAACACAUGCAAGUCGAACGGCAGCAC-------AGUAAGAG------CU---U-G
-------CUCUUAUG-------G--G-UG--GC-GAG-UGGCG-GACGGGUGAGGAAUAC
AUCGGA-AU-CUACUCUUUCG---------------------UGGGGG-AUAACGU--A-
G-GGAAA-CUUACGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UACGA-CC-------------------------------------------
------------------------------------------------------------
----U-AC-G-------------GGU-GAAA-GCGGAGGACC---------------U--
U-C-G--------------GGCUUCGCGCGGUUGAAUGAGCCGAUG-UCGGAUUA-GCUA
--GUUGGCGGGGUAAAGGCCCA-CCAAGGCGACGAUCCGU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGC-GCA----AGCCUGAUCCAGCCAUGCCGCGU--GGGUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CCCUUUUGUUGGGAAAGAA-AAGCAGUCGG-UUAAU
A-C-CCGAUU-GUUCUGACGGUACCCAAAG-AAUAAGCACC-GGCUA-ACU-UCGUGCCA
GCAGCCGCGGUAAUACGAAGGGUGCAAGCGUUACUCGGAAUUACUGGGCGUAAAGCGUGC
GUAGGUGGUGGUU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUGUUGUGAAAGCCCUGGGCUCAACC-
--------------------------------UGGG-AA-UUGCAGUGGAUACUGGGU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------CACUA--GAGUGUGGUA
G-AGGGUAGCGGAA-UUCCCGGUGUAGCAGUGAAAUGCGUAGAGAUCGGGAGGAACAUCC
GUGGCGAAGGCGGCUACCUGGACCAACACUGACACUGAGGCACGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCCUAAACGAUGC-GAACUGGAUGUUGGGUG
C-----------------------------------------------------------
---AAUUUG---------------------------------------------------
----------------------GCACGCAGU-AUCGAAGCUAACGC-GUUAAGUU-----
-------CGCC-GCCUGGGGAGUACGG-UCGCAAGAC-UGAAACUCAAAGGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGUAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-GGUCUUGACAUCCAC-G--G-A-ACUU-UCCA--GAGA---UGGA-U-UGGUG-
----CC-UUCG-GG----AACCGUG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UGUCC-UUAGUUGCC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
------------G---U-AA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--U-G---------GGAACUCUAAGGAGACC-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGGCCCUU-ACGACCAGGGCUACACACGUACUAC
AAUG-GUAGGGACAGAGGGC----------------------------------------
----------------------U-GCAAACCCGCGAGGGCAAGCCAA-UCCC--A-GAAA
CCCUAUCUCAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGCAG-AUCAGCAUUGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUUGUUGC-ACCAGAAGCAGGUAGCUUAACC---------------
----U-UC-G----------------------GGAGGGCG----------CUUGCC-ACG
GUGUGGCCGAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGG
AUCACCUCCUUU----------
>Yersinia_pestis
------------AAUUGAAGAGUUUGAUCAUG-GCUCAGAUUGA-ACGCUGGCGGC-A-G
GC-CUAACACAUGCAAGUCGAGCGGCAGCGG--------GAAGUAG------UU---U-A
-------CUACUUU--------G--C-CG--GC-GAG-CGGCG-GACGGGUGAGUAAUGU
CUGGGG-AU-CUGCCUGAUGG---------------------AGGGGG-AUAACUA--C-
U-GGAAA-CGGUGGCUAAUACCGCA-----------------------------------
------------------------------------------------------------
---------UGACC-UC-------------------------------------------
------------------------------------------------------------
----G-CA-A-------------GAG-CAAA-GUGGGGGACC---------------U--
U-A-G--------------GGCCUCACGCCAUCGGAUGAACCCAGA-UGGGAUUA-GCUA
--GUAGGUGGGGUAAUGGCUCA-CCUAGGCGACGAUCCCU-AGCUGGUCUGAGAGGAU-G
ACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGCACAAUGGGC-GCA----AGCCUGAUGCAGCCAUGCCGCGU--GUGUGAAGAAGG
CC--UU-CG--GGUU-GU-AAAG-CACUUUCAGCGAGGAGGAA-GGGGUUGAGU-UUAAU
A-C-GCUCAA-UCAUUGACGUUACUCGCAG-AAGAAGCACC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCAC
GCAGGCGGUUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGAUGUGAAAUCCCCGCGCUUAACG-
--------------------------------UGGG-AA-CUGCAUUUGAAACUGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUA--GAGUCUUGUA
G-AGGGGGGUAGAA-UUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCG
GUGGCGAAGGCGGCCCCCUGGACAAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCUGUAAACGAUGU-CGACUUGGAGGUUGUGC
C-----------------------------------------------------------
---CUUGA----------------------------------------------------
----------------------GGCGUGGCU-UCCGGAGCUAACGC-GUUAAGUC-----
-------GACC-GCCUGGGGAGUACGG-CCGCAAGGU-UAAAACUCAAAUGAAUUGACGG
GGGCCCGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAA-CCUU-
A-CCU-ACUCUUGACAUCCAC-A--G-A-AUUU-GGCA--GAGA---UGCU-A-AAGUG-
----CC-UUCG-GG----AACUGUG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UU-GUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-UAUCC-UUUGUUGCC-A
GCAC--------------------------------------------------------
------------------------------------------------------------
------------G---U-AA--U-------------------------------------
------------------------------------------------------------
------------------------------------------------GG----------
--U-G---------GGAACUCAAGGGAGACU-GCCG-G----UGA-CAAAC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCAUC-AUGGCCCUU-ACGAGUAGGGCUACACACGUGCUAC
AAUG-GCAGAUACAAAGUGA----------------------------------------
----------------------A-GCGAACUCGCGAGAGCCAGCGGA-CCAC--A-UAAA
GUCUGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUG-AAGUCGGAAUCGCUAGU
AAUCGUAG-AUCAGA-AUGCUACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UGGGUUGC-AAAAGAAGUAGGUAGCUUAACC---------------
----U-UC-G----------------------GGAGGGCG----------CUUACC-ACU
UUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGG
AUCACCUCCU------------
>Zymomonas_mobilis
------------------AGAGUUUGAUUCUG-GCUCAGAACGA-ACGCUGGCGGC-A-U
GC-UUAACACAUGCAAGUCGAACGAAG-----------------GC------UU---C-G
-------GC----------------------CU-UAG-UGGCG-CACGGGUGCGUAACGC
GUGGGA-AU-CUGCCUUCAGG---------------------UACGGA-AUAACUA--G-
G-GGAAA-CUCGAGCUAAUACCGUA-----------------------------------
------------------------------------------------------------
---------UGACA-UC-------------------------------------------
------------------------------------------------------------
----G-AG-A-------------GAU-CAAA-GA-----------------------U--
U-U-A--------------------UCGCCUGAAGAUGAGCCCGCG-UUGGAUUA-GCUA
--GUUGGUAGGGUAAAAGCUUA-CCAAGGCGACGAUCCAU-AGCUGGUCUGAGAGGAU-G
AUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGG-GAGGCAGCAGUGGGGAA
UAUUGGACAAUGGGG-GAA----ACCCUGAUCCAGCAAUGCCGCGU--GAGUGAAGAAGG
CC--UU-AG--GGUU-GU-AAAG-CUCUUUUACCCGGGAUGA-------------UA---
A--------------UGACAGUACCGGGAG-AAUAAGCUCC-GGCUA-ACU-CCGUGCCA
GCAGCCGCGGUAAUACGGAGGGAGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGUAC
GUAGGCGGUUUAA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCAGGGGUGAAAGCCCAGAGCUCAACU-
--------------------------------CUGG-AA-CUGCCUUUGAGACUGUUA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUA--GAACAUAGAA
G-AGGUAAGUGGAA-UUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCA
GUGGCGAAGGCGACUUACUGGUCUAUAGUUGACGCUGAGGUACGAAAGCGUGGGUAGCAA
ACAGGAUUAGAUACCCUG-GUAGUCCACGCCGUAAACGAUGA-UAACUAGCUGUCCGGGU
A-----------------------------------------------------------
---CAUGG----------------------------------------------------
----------------------UAUCUGGGU-GGCGGAGCUAACGC-AUUAAGUU-----
-------AUCC-GCCUGGGGAGUACGG-UCGCAAGAU-UAAAACUCAAAGAAAUUGACGG
GGGCCUGC-ACAA-GCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAA-CCUU-
A-CCA-GCGUUUGACAUCCUG-A--UCG-CGGAAAGUG--GAGA---CACAUU-CUUUC-
----AG-UUCGGCU----GGAUCAG-AGACAGG-UGCUGCAUGGCUGUCGUCAGCUCGUG
UC-GUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCU-CACCU-CUAGUUGCC-A
UCAU--------------------------------------------------------
------------------------------------------------------------
----------------U-AA--G-------------------------------------
------------------------------------------------------------
-------------------------------------------------U----------
--U-G---------GGCACUUUAGAGGAACU-GCCG-G----UGA-UAAGC-CG-GAGGA
AGGUGGGGAUGACGUCAAGUCCUC-AUGGCCCUU-ACGCGCUGGGCUACACACGUGCUAC
AAUG-GCGGUGACAGAGGGC----------------------------------------
----------------------C-GCAAGCCUGCAAAGGUUAGCUAA-UCUC--A--AAA
AGCCGUCUCAGUUCGGAUUGUUCUCUGCAACUCGAGAGCAUG-AAGGCGGAAUCGCUAGU
AAUCGCGG-AUCAGC-AUGCCGCGGUGAAUACGUUCCCAGGCCUUGUACACACCGCCCGU
CACACCAUGGGAG-UUGGAUUC-ACCCGAAGGCGCUGCGCUAACCC--------------
----G-CA-A---------------------GGGAGGCAG----------GCGACC-ACG
GUGGGUUUAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCU---------------
>Aeropyrum_pernix
----------------ACUCCGGUUGAUCCUG-CCGGACCCGAC--CGCUAUCGGG-GUA
GGGCUAAGCCAUGGGAGUCGAACGCCC-CGC---------------------CG---C-U
-------------------------G-CG--GG-GCG-UGGCG-GACGGCUGAGUAACAC
GUGGCUAAC-CUACCCUCGGG---------------------ACGGGG-AUAACCCCUC-
G-GGAAA-CUGGGGCUAAUCCCCGA-----------------------------------
------------------------------------------------------------
---------UA-GG-CGGGGGGUGCC----------------------------------
------------------------------------------------------------
---UG-GA-A-G-GGU-CC-UCCGCC-GAAAGGGGCCG--CGGG-----------GGG--
U-UAUCG----------CCCGCGGUCCGCCCGAGGAUGGGGCUGCG-GCCCAUCACGGUA
--GUUGGCGGGGUAAUGGCCCG-CCAAGCCUACGACGGGU-AGGGGCCGUGAGAGCGG-G
AGCCCCCAGAUGGGCACUGAGACAAGGGCCCAGGCCCUACGG-GGCGCACCAGGCGCGAA
AACUCCGCAAUGCGG-GCA----ACCGUGACGGGGCUACCCCGAGU--GCCC------CC
C---UU--G---GGG-------G-GGCUUUUCCCCGCUG----------------UAA-G
U-A-------------------GGCGGGGG-AAUAAGCGGGGGGCAAGACU-GG-UGUCA
GCCGCCGCGGUAAUACCAGCCCCGCGAGCGGUCGGGGUGCUUACUGGGCCUAAAGCGCCC
GUAGCCGGCUCGA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCCCCGCCUAAAGCCCCGGGCUCAACC-
--------------------------------CGGG-GA-GUGGCGGGGAUACUGUCG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GGGGGCGGGA
G-AGGCCGAGGGUA-CUCCCGGGGUAGGGGCGAAAUCCAUUAAUCCCGGGAGGACCACCA
GUGGCGAAGGCGCUCGGCUGGAACGCGCCCAACGGUGAGGGGCGAAAGCCGGGGGAGCGA
ACCGGAUUAGAUACCCGG-GUAGUCCCGGCUGUAAACGAUGC-GGGCUAGGUGUUGGGCG
GGC---------------------------------------------------------
---GUGCGA---------------------------------------------------
--------------------GCCCGCCCAGU-GCCGCAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-GGGGUGGAGCCUGCGGCUUAAUUGGAGUCAACGCCGGGAA-CCUCC
A-CCG-GGG-GC-GA-CAGCA-GGA-UGACGGC-CAGGCUGAAGG--CCUU-G-CCCGA-
--------------------CGCG-CUGA-GGGGAGGUGCAUGGCCGUCGCCAGCUCGUG
CC-GUGAGGUGUCCUGUUAAGUCAGGCAACGAGCGAGACCCC-CGCCC-CUAGUUGCC-A
UCCCCGGG----------------------------------------------------
------------------------------------------------------------
----------------G-CG--A-------------------------------------
------------------------------------------------------------
------------------------------------------C--CCG-G----------
--G-G---------GGCACACUAGGGGGACU-GCCG-C----CGC-UAAGG-CG-GAGGA
AGGAGGGGGCAACGGCAGGUCAGC-AUGCCCCUA-AACCCCCGGGCCGCACGCGGGCUAC
AAUG-GCGGGGACAGCGGGU----------------------------------------
----------------------G-CCGACCCCGAAAGGGGGAGGCAA-UCCC--U-CAAA
CCCCGCCUCAGUUGGGAUCGAGGGCUGCAACUCGCCCUCGUG-AACGUGGAAUCCCUAGU
AACCGCGC-GUCAUC-AUCGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACUGCCCGU
CGCUCCACCCGAG-GGGGGAGG-GGGUGAGGCCCUC-UCC--------------------
----G-CC-G-------------------------GGAGG----------GGGUCG-AAC
CCCCUCCCCCCGAGGGGGGAGAACUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCC-------------
>Archaeoglobus_fulgidus
----------------AUUCUGGUUGAUCCUG-CCAGAGGCCGC--UGCUAUCCGG-CUG
GGACUAAGCCAUGCGAGUCAAGGGGCU-UGU----------AUCCC------UU---C-G
-------GGGAU-------------G-CA--AG-CAC-CGGCG-GACGGCUCAGUAACAC
GUGGACAAC-CUGCCCUCGGG---------------------UGGGGG-AUAACCC--C-
G-GGAAA-CUGGGGCUAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-GGAUGGGUAC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GUC-CC-AUCUCC-GAAAGCG-----------------------C--
U-U-A-------------------GC-GCCCGAGGAUGGGUCUGCG-GCGGAUUA-GGUU
--GUUGGUGGGGUAACGGCCCA-CCAAGCCGAAGAUCCGU-ACGGGCCAUGAGAGUGG-G
AGCCCGGAGAUGGACCCUGAGACACGGGUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUCCGCAAUGCGG-GAA----ACCGCGACGGGGUCAGCCGGAGU--GCUC------GC
GC--AU--C--GCGC-------G-GGCUGUCGGGGUGCC----------------UAA-A
A-A-------------------GCACCCCACAGCAAGGGCCGGGCAAGGCC-GG-UGGCA
GCCGCCGCGGUAAUACCGGCGGCCCGAGUGGCGGCCACUUUUAUUGGGCCUAAAGCGUCC
GUAGCCGGGCUGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCCUCCGGGAAAUCUGGCGGCUUAACC-
--------------------------------GUCA-GACUGCCGGAGGAUACUGCCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GCCUA--GGGACCGGGA
G-AGGCCGGGGGUA-UUCCCGGAGUAGGGGUGAAAUCCUGUAAUCCCGGGAGGACCACCU
GUGGCGAAGGCGCCCGGCUGGAACGGGUCCGACGGUGAGGGACGAAGGCCAGGGGAGCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCUGUAAACGAUGC-GGACUAGGUGUCACCGA
AGC---------------------------------------------------------
---UACGA----------------------------------------------------
--------------------GCUUCGGUGGU-GCCGGAGGGAAGCC-GUUAAGUC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACUACAA-CGGGUGGAGCCUGCGGUUUAAUUGGAUUCAACGCCGGGAA-GCUU-
A-CCG-GGG-GA-GA-CAGCG-GGA-UGAAGGU-CGGGCUGAAGA--CCUU-A-CCAGA-
--------------------CUAG-CUGA-GAGGUGGUGCAUGGCCGCCGUCAGUUCGUA
CU-GUGAAGCAUCCUGUUAAGUCAGGCAACGAGCGAGACCCG-CGCCC-CCAGUUGCC-A
GCGGUUCCC---------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
-----------------------------------------GG--GAAGC----------
--C-G---------GGCACACUGGGGGGACU-GCCG-G----CGC-UAAGC-CG-GAGGA
AGGUGCGGGCAACGGCAGGUCCGU-AUGCCCCGA-AUCCCCCGGGCUACACGCGGGCUAC
AAUG-GCCGGGACAAUGGGU----------------------------------------
----------------------A-CCGACCCCGAAAGGGGUAGGUAA-UCCC--C-UAAA
CCCGGUCUAACCUGGGAUCGAGGGCUGCAACUCGCCCUCGUG-AACCUGGAAUCCGUAGU
AAUCGCGC-CUCAAA-AUGGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAGCCACCCGAG-UGGGCCAG-GGGCGAGGGGGUG-GCC--------------------
----C-UA---------------------------GGCCA----------CCUUCG-AGC
CCAGGGUCCGCGAGGGGGGCUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Caldivirga_maquilingensis
----------------AAACCGGUUGAUCCUG-CCGGACCCGAC--CGCUAUCGGG-GUG
GGGCUUAGCCAUGCGAGUCAAGCGCCC-CAG---------------------GGACCC-G
-------------------------C-UG--GG-GUG-CGGCG-CACGGCUCAGUAACAC
GUGGCCAAC-CUACCCUCGGG---------------------AGGGGG-AUAACCC--C-
G-GGAAA-CUGGGGCUAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-GGAAGGGUGC-----------------------------------
------------------------------------------------------------
---UG-GA-A-G-GCC-CC-CUCCCC-GAAAAGAGCCA--CGUC------------CGGU
A-C-CCG-----------GCGCGGCUCGCCCGAGGAUGGGGCUACG-GCCCAUCAUGGUA
--GCUGGCGGGGUAACGGCCCG-CCAGGCCGAAGACGGGU-GGGGGCCGUGAGAG-CGGG
AGCCCCGAGAUGGGCACUGAGACAAGGGCCCAGGCCCUAUGG-GGUGCAGCAGGCUCGAA
UACUCCGCAAUGCGG-UAA----CCCGCGACGGGGCCACCCCGAGU--GCCG------CC
CG--AU--G--AGGG-------C-GGCUUUUCCCCCGUG----------------UAA-G
U-A-------------------GCUGGGGG-AAUAAGCGGGGGGCAAGUCU-GG-UGUCA
GCCGCCGCGGUAAUACCAGCUCCGCGAGUGGUCGGGGUGUUUACUGGGCCUAAAGCGCCC
GUAGCCGGCCCGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCACCCCUGAAAUCCAUGGGCUCAACC-
--------------------------------CAUG-GGC-CGGGGGUGAUACUGCCG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GGGGGUGGGA
G-AGGCCGAGGGUA-CUCCCGGGGUAGGGGCGAAAUCCGAUAAUCCCGGGAGGACCACCA
GUGGCGGAAGCGCUCGGCUGGAACACGCCCGACGGUGAGGGGCGAAAGCUGGGGGAGCAA
AGGGGAUUAGAUACCCCU-GUAGUCCCAGCUGUAAACGAUGC-GGGCUAGCUGUUGGGUG
GGC---------------------------------------------------------
---UUAGU----------------------------------------------------
--------------------GCCCGCCCAGU-GGCGUAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAACC-UGAAACUUAAAGGAAUUGGCGG
GGGGGCACCACAA-GGGGUGAAGCUUGCGGCUUAAUUGGAGUCAACGCCGGAAA-CCUC-
A-CCC-GGG-GC-GA-CAGCA-GGA-UGAAGGC-CAGGCUAACGA--CCUU-G-CCGGA-
--------------------CGAG-CUGA-GAGGAGGUGCAUGGCCGUCGCCAGCUCGUG
CC-GUGAGGUGUCCAGUUAAGUCUGGCAACGAGCGCGACCCC-CGCUC-CCUGUUGCU-A
CCCUACCC----------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GGUGG----------
--G-G---------GGCACACAGGGAGGACU-GCCG-G----CG--UAAGC-CG-GAGGA
AGGAGGGGGCCACGGCAGGUCAGU-AUGCCCCGA-AACCCCGGGGCUGCACGCGAGCUGC
AAUG-GCGGGGACAGCGGGU----------------------------------------
----------------------U-CCGACCCCGAAAGGGGGAGGCAA-UCCC--G-UAAA
CCCCGCCCCAGUAGGAAUCGAGGGCUGUAACUCGCCCUCGUG-AACGUGGAAUCCCUAGU
AACCGCGU-GUCACC-AACGCGCGGUGAAUACGUCCCUGCCCCUUGCACACACCGCCCGU
CGCGCCACCCGAG-GGGAUCCU-UAACGAGGCCCCC-UG---------------------
----G-GU-A------------------------ACUGGG----------GGGUCG-AGU
UGGGGGUCCCCAAGGGGGGCGAAGUCGUAACAAGGUGGCCGUAGGGGAACCUGCGGCCGG
AUCACCUCCU------------
>Haloarcula_marismortui
----------------AUUCCGGUUGAUCCUG-CCGGAGGCCAU--UGCUAUCGGA-GUC
CGAUUUAGCCAUGCUAGUUGCACGAGU-------------------------UU---A-G
-------------------------------AC-UCG-UAGCA-UAUAGCUCAGUAACAC
GUGGCCAAA-CUACCCUACAG---------------------ACCGCG-AUAACCU--C-
G-GGAAA-CUGAGGCCAAUAGCGGA-----------------------------------
------------------------------------------------------------
---------UA-UC-ACUCUCAGAC-----------------------------------
------------------------------------------------------------
---UG-GA-G-U-GUC-GA-GAGUGA-GAAA-CGU----------------------U--
C-C-G-------------------GCG-CUGUAGGAUGUGGCUGCG-GCCGAUUA-GGUA
--GAUGGUGGGGUAACGGCCCA-CCAUGCCGAUAAUCGGU-ACAGGUUGUGAGAGCAA-G
AGCCUGGAGACGGUAUCUGAGACAAGAUACCGGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUUUACACUGCAC-GAC----AGUGCGAUAGGGGGACUCCGAGU--GUGA------GG
GC--AUAUA--GCCC-------U-CGCUUUUCUGAACCG----------------UAA-G
G-U-------------------GGUUCAGG-AACAAGGACUGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAAUACCGGCAGUCCAAGUGAUGGCCGAUAUUAUUGGGCCUAAAGCGUCC
GUAGCUUGCUGUG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCCAUUGGGAAAUCGACCAGCUCAACU-
--------------------------------GGUC-GGCGUCCGGUGGAAACUACAC--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUU--GGGGCCGAGA
G-ACUCAACGGGUA-CGUCCGGGGUAGGAGUGAAAUCCUGUAAUCCUGGACGGACCACCA
AUGGGGAAACCACGUUGAGAGACCGGACCCGACAGUGAGGGACGAAAGCCAGGGUCUCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCUGUAAACAAUGC-UCGCUAGGUAUGUCACG
CGC---------------------------------------------------------
---CAUGA----------------------------------------------------
--------------------GCACGUGAUGU-GCCGUAGUGAAGAC-GAUAAGCG-----
-------AGCC-GCCUGGGAAGUACGU-CCGCAAGGA-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-CCGGAGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACA-UCUC-
A-CCG-GUC-CC-GA-CAGUAGUAA-UGACAGU-CAGGUUGACGA--CUUU-A-CUCGA-
--------------------CGCUACUGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUA
CC-GUGAGGCGUCCUGUUAAGUCAGGCAACGAGCGAGACCCA-CACUU-CUAGUUGCC-A
GCAACACC----------------------------------------------------
------------------------------------------------------------
----------------C-CU--GC------------------------------------
------------------------------------------------------------
------------------------------------------G--GUGGU----------
--U-G---------GGUACACUAGGAGGACU-GCCA-U----UGC-UAAAA-UG-GAGGA
AGGAAUGGGCAACGGUAGGUCAGU-AUGCCCCGA-AUGGACCGGGCAACACGCGGGCUAC
AAUG-GCUAUGACAGUGGGA----------------------------------------
----------------------U-GCAACGCCGAAAGGCGAAGCUAA-UCUC--C--AAA
CGUAGUCGUAGUUCGGAUUGCGGGCUGAAACCCGCCCGCAUG-AAGCUGGAUUCGGUAGU
AAUCGCGU-GUCAGA-AGCGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAAGCACCCGAG-UGGGGUCC-GGAUGAGGCCGUC------------------------
----A-UG-C----------------------------GA----------CGGUCG-AAU
CUGGGCUCCGCAAGGGGGCUUAAGUCGUAACAAGGUAGCCGUAGAGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Halobacterium_sp.
----------------AUUCCGGUUGAUCCUG-CCGGAGGCCAU--UGCUAUCGGA-GUC
CGAUUUAGCCAUGCUAGUUGUGCGGGU-------------------------UU---A-G
-------------------------------AC-CCG-CAGCG-GAAAGCUCAGUAACAC
GUGGCCAAG-CUACCCUGUGG---------------------ACGGGA-AUACUCU--C-
G-GGAAA-CUGAGGCUAAUCCCCGA-----------------------------------
------------------------------------------------------------
---------UA-AC-GCUUUGCUCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-G-GGG-CA-AAGCCG-GAAA-CGC----------------------U--
C-C-G-------------------GCG-CCACAGGAUGCGGCUGCG-GUCGAUUA-GGUA
--GACGGUGGGGUAACGGCCCA-CCGUGCCCAUAAUCGGU-ACGGGUUGUGAGAGCAA-G
AGCCCGGAGACGGAAUCUGAGACAAGAUUCCGGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUUUACACUGUAC-GAA----AGUGCGAUAAGGGGACUCCGAGU--GUGA------AG
GC--AUAGA--GCCU-------U-CACUUUUGUACACCG----------------UAA-G
G-U-------------------GGUGCACG-AAUAAGGACUGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAAUACCGGCAGUCCGAGUGAUGGCCGAUCUUAUUGGGCCUAAAGCGUCC
GUAGCUGGCUGAA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCCGUUGGGAAAUCUGUCCGCUUAACG-
--------------------------------GGCA-GGCGUCCAGCGGAAACUGUUC--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUU--GGGACCGGAA
G-ACCUGAGGGGUA-CGUCUGGGGUAGGAGUGAAAUCCUGUAAUCCUGGACGGACCGCCG
GUGGCGAAAGCGCCUCAGGAGAACGGAUCCGACAGUGAGGGACGAAAGCUAGGGUCUCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUAGCUGUAAACGAUGU-CCGCUAGGUGUGGCGCA
GGC---------------------------------------------------------
---UACGA----------------------------------------------------
--------------------GCCUGCGCUGU-GCCGUAGGGAAGCC-GAGAAGCG-----
-------GACC-GCCUGGGAAGUACGU-CUGCAAGGA-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACUACAA-CCGGAGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACA-UCUC-
A-CCA-GCC-CC-GA-CAGUAGUAA-UGACGGU-CAGGUUGAUGA--CCUU-A-CCCGA-
--------------------GGCUACUGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUA
CC-GUGAGGCGUCCUGUUAAGUCAGGCAACGAGCGAGACCCG-CACUC-CUAAUUGCC-A
GCAGUACCC---------------------------------------------------
------------------------------------------------------------
----------------U-UU----------------------------------------
------------------------------------------------------------
-----------------------------------------GG--GUAGC----------
--U-G---------GGUACAUUAGGUGGACU-GCCG-C----UGC-CAAAG-CG-GAGGA
AGGAACGGGCAACGGUAGGUCAGU-AUGCCCCGA-AUGGGCUGGGCAACACGCGGGCUAC
AAUG-GUCGAGACAAUGGGA----------------------------------------
----------------------A-GCCACUCCGAGAGGAGGCGCUAA-UCUC--C-UAAA
CUCGAUCGUAGUUCGGAUUGAGGGCUGAAACUCGCCCUCAUG-AAGCUGGAUUCGGUAGU
AAUCGCGU-GUCAGC-AGCGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAAUCACCCGAG-UGGGGUUC-GGAUGAGGCCGGC------------------------
----A-UG-C----------------------------GC----------UGGUCA-AAU
CUGGGCUCCGCAAGGGGGAUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Haloferax_volcanii
----------------AUUCCGGUUGAUCCUG-CCGGAGGUCAU--UGCUAUUGGG-GUC
CGAUUUAGCCAUGCUAGUUGCACGAGU-------------------------UC---A-U
-------------------------------AC-UCG-UGGCG-AAAAGCUCAGUAACAC
GUGGCCAAA-CUACCCUACAG---------------------AGAACG-AUAACCU--C-
G-GGAAA-CUGAGGCUAAUAGUUCA-----------------------------------
------------------------------------------------------------
---------UA-CG-GGAGUCAUGC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GCC-GA-CUCCCC-GAAA-CGC----------------------U--
C-A-G-------------------GCG-CUGUAGGAUGUGGCUGCG-GCCGAUUA-GGUA
--GACGGUGGGGUAACGGCCCA-CCGUGCCGAUAAUCGGU-ACGGGUUGUGAGAGCAA-G
AGCCCGGAGACGGAAUCUGAGACAAGAUUCCGGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUUUACACUGCAC-GCA----AGUGCGAUAAGGGGACCCCAAGU--GCGA------GG
GC--AUAUA--GUCC-------U-CGCUUUUCUCGACCG----------------UAA-G
G-C-------------------GGUCGAGG-AAUAAGAGCUGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAAUACCGGCAGCUCAAGUGAUGACCGAUAUUAUUGGGCCUAAAGCGUCC
GUAGCCGGCCACG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------AAGGUUCAUCGGGAAAUCCGCCAGCUCAACU-
--------------------------------GGCG-GGCGUCCGGUGAAAACCACGU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GGGACCGGAA
G-GCUCGAGGGGUA-CGUCCGGGGUAGGAGUGAAAUCCCGUAAUCCUGGACGGACCACCG
AUGGCGAAAGCACCUCGAGAAGACGGAUCCGACGGUGAGGGACGAAAGCUAGGGUCUCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUAGCUGUAAACGAUGC-UCGCUAGGUGUGACACA
GGC---------------------------------------------------------
---UACGA----------------------------------------------------
--------------------GCCUGUGUUGU-GCCGUAGGGAAGCC-GAGAAGCG-----
-------AGCC-GCCUGGGAAGUACGU-CCGCAAGGA-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACUACAA-CCGGAGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACA-UCUC-
A-CCA-GCU-CC-GA-CUACAGUGA-UGACGAU-CAGGUUGAUGA--CCUU-AUCACGA-
--------------------CGCUGUAGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUA
CC-GUGAGGCGUCCUGUUAAGUCAGGCAACGAGCGAGACCCG-CACUU-CUAAUUGCC-A
GCAGCAGU----------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
------------------------------------------A--CUGGC----------
--U-G---------GGUACAUUAGAAGGACU-GCCG-C----UGC-UAAAG-CG-GAGGA
AGGAACGGGCAACGGUAGGUCAGU-AUGCCCCGA-AUGAGCUGGGCUACACGCGGGCUAC
AAUG-GUCGAGACAAUGGGU----------------------------------------
----------------------U-GCUAUCUCGAAAGAGAACGCUAA-UCUC--C-UAAA
CUCGAUCGUAGUUCGGAUUGAGGGCUGAAACUCGCCCUCAUG-AAGCUGGAUUCGGUAGU
AAUCGCAU-UUCAAU-AGAGUGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAAGCACCCGAG-UGAGGUCC-GGAUGAGGCCACC------------------------
----A-CA-C----------------------------GG----------UGGUCG-AAU
CUGGGCUUCGCAAGGGGGCUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Haloquadratum_walsbyi
----------------AUUCCGGUUGAUCCUG-CCGGAGGCCAU--UGCUAUCGGA-GUC
CGAUUUAGCCAUGCUAGUCGUGCGAGU-------------------------UC---A-G
-------------------------------AC-UCG-CGGCA-CCGAGCUCAGUAACAC
GUGGCCAAA-CUACCCUACAG---------------------AGACGG-AUACCCU--C-
G-GGAAA-CUGAGGUUAACCCGUCA-----------------------------------
------------------------------------------------------------
---------UA-CC-GAUCUCAGGC-----------------------------------
------------------------------------------------------------
---UU-GA-A-U-CGCAGA-GAUCAC-AAAA-CGC----------------------C--
C-C-G-------------------GCG-CUGUAGGAUGUGGCUGCG-GUUGAUUA-GGUA
--GACGGUGGGGUAACGGCCCA-CCGUGCCCAUAAUCAGU-ACAGGUUGUGAGAGCAA-G
AACCUGGAGACGGAAUCUGAGACAAGAUUCCGGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUUUACACUGCAC-GCA----CGUGCGAUAAGGGGACUCCGAGU--GCGA------GG
GC--AUAUC--GUCC-------U-CGCUUUCGUGUACCG----------------UAG-G
G-U-------------------GGUACACC-AACAAGGGCUGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAAUACCGGCAGCCCGAGUGAUGGCCGAUCUUAUUGGGCCUAAAGCGUCC
GUAGCUGGCUGCG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCCGUCGGGAAAUCCACUCGCCCAACG-
--------------------------------AGUG-GGCGUCCGACGGAAACUGCAC--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUU--GGGACCGGAA
G-GCUCGAAGGGUA-CGUUCGGGGUAGGAGUGAAAUCCCAUAAUCCCGCACGGACCACCG
AUGGCGAAAGCACUUCGAGAAAACGGAUCCGACAGUGAGGGACGAAAGCCAGGGUCUCCA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCCGUAAACAAUGU-UCGCUAGGUAUGACACA
GAC---------------------------------------------------------
---UACGU----------------------------------------------------
--------------------GUCUCUGUUGU-GCCGUAGGGAAGCC-GAGAAGCG-----
-------AACC-GCCUGGGAAGUACGU-CUGCAAGGA-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACUACAA-CCGGAGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACA-UCUC-
A-CCA-GCU-CC-GA-CUACAGUGA-UGACGAC-CAGGUUGAUGA--CCUC-AUCACGA-
--------------------CGCUGUAGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUA
CC-GUGAGGCGUCCUGUUAAGUCAGGCAACGAGCGAGACCCG-CACCC-CUAAUUGCC-A
GCAACAGU----------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
------------------------------------------A--CUGGU----------
--U-G---------GGUACAUUAGGAGGACU-GCCA-G----UGU-UAAAC-UG-GAGGA
AGGAACGGGCAACGGUAGGUCAGU-AUGCCCCGA-AUGAGCUGGGCAACACGCGGGCUAC
AAUG-GCUAAGACAAUGGGU----------------------------------------
----------------------C-GCUAUCUCGACAGAGAACGCUAA-UCUC----GAAA
CUUAGUCGUAGUUCGGAUUGAGGGCUGAAACUCGCCCUCAUG-AAGCUGGAUUCGGUAGU
AGCCGCCU-UUCAGU-AGAAGGCGACGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAAGCACCCGAG-UGAGGUCC-GGAUGAGGCUAUC------------------------
----A-UU------------------------------GA----------UAGUCG-AAU
CUGGGCUUCGCAAGGGGGCUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Halorubrum_lacusprofundi
----------------AUUCCGGUUGAUCCUG-CCGGAGGCCAU--UGCUAUUGGG-AUU
CGAUUUAGCCAUGCUAGUCGCACGAGU-------------------------UC---A-G
-------------------------------AC-UCG-UGGCG-AAUAGCUCAGUAACAC
GUGGCCAAA-CUACCCUUCGG---------------------AGCACG-AUACCCU--C-
G-GGAAA-CUGAGGUUAAUAGUGCA-----------------------------------
------------------------------------------------------------
---------UA-CC-ACAAUCCACC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GAG-GA-UUGUGC-CAAA-UGC----------------------U--
C-C-G-------------------GCG-CCGAAGGAUGUGGCUGCG-GCCGAUUA-GGUA
--GACGGUGGGGUAACGGCCCA-CCGUGCCAAUAAUCGGU-ACGGGUCAUGAGAGUGA-G
AACCCGGAGACGGAAUCUGAGACAAGAUUCCGGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUUUACACUGCAC-GCC----AGUGCGAUAAGGGAAUCCCAAGU--GCGU------AG
GC--AUAGA--GCCU-------A-CGCUUUUGUACACCG----------------UAG-G
G-A-------------------GGUGUACG-AAUAAGGGCUGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAAUACCGGCAGCCCGAGUGAUGGCCGAUCUUAUUGGGCCUAAAGCGUCC
GUAGCUGGCCGCG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCUAUCGGAAAAUCCACCCGCUCAACG-
--------------------------------GGUG-GGCGUCCGGUAGAAACUGCGU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GGGACCGGAA
G-GCGCGACGGGUA-CGUCCGGGGUAGGAGUGAAAUCCUGUAAUCCUGGACGGACCGCCG
AUGGCGAAAGCACGUCGCGAGGACGGAUCCGACAGUGAGGGACGAAAGCCAGGGUCUCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCCGUAAACAAUGU-CUGUUAGGUGUGGCUCC
CAC---------------------------------------------------------
---UACGA----------------------------------------------------
--------------------GUGGGUGCUGU-GCCGUAGGGAAGCC-GCUAAACA-----
-------GACC-GCCUGGGAAGUACGU-CCGCAAGGA-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACUACAA-CCGGAGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACA-UCUC-
A-CCA-GCG-UC-GA-CUGUAAUAA-UGACGAU-CAGGUUGAUGA--CCUU-A-UCCGA-
--------------------GUUU-CAGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUA
CC-GUGAGGCGUCCUGUUAAGUCAGGCAACGAGCGAGACCCG-CAUCC-UUACUUGCC-A
GCAGCACU----------------------------------------------------
------------------------------------------------------------
----------------G-CG--A-------------------------------------
------------------------------------------------------------
------------------------------------------A--GUGGC----------
--U-G---------GGGACAGUAGGGAGACC-GCCG-U----GGC-CAACA-CG-GAGGA
AGGAACGGGCAACGGUAGGUCAGU-AUGCCCCGA-AUGCGCUGGGCAACACGCGGGCUAC
AAUG-GUCGAGACAAAGGGU----------------------------------------
----------------------U-CCAACUCCGAAAGGAGACGGUAA-UCUC--A-GAAA
CUCGAUCGUAGUUCGGAUUGUGGGCUGCAACUCGCCCACAUG-AAGCUGGAUUCGGUAGU
AAUCGCGU-GUCAUA-AGCGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAAGCACCCGAG-UGAGGUCC-GGAUGAGGCUCGU------------------------
------UA-C----------------------------AC----------GAGUCG-AAU
CUGGGCUUCGCAAGGGGGCUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCA------------
>Hyperthermus_butylicus
----------------ACUCCGGUUGAUCCUG-CCGGACCCGAC--CGCUAUCGGG-GUG
GGACUAAGCCAUGGGAGUCGUGCGCCC-CCG---------------------GA---U-G
-------------------------C-GG--GG-GCG-CGGCG-GACGGCUGAGUAACAC
GUGGCUAAC-CUACCCUCGGG---------------------ACGGGG-AUAACCC--C-
G-GGAAA-CUGGGGCUAAUCCCCGA-----------------------------------
------------------------------------------------------------
---------UA-GG-CGAGGGGGCC-----------------------------------
------------------------------------------------------------
---UG-GA-ACG-GGU-CC-CUCGCC-GAAAGGGCGCG--CGG------------AGC--
U-U-CC------------CCGCGCGCCGCCCGAGGAUGGGGCUGCG-GCCCAUCA-GGUA
--GUUGGCGGGGUAACGGCCCG-CCAAGCCGAUAACGGGU-AGGGGCCGUGGGAGCGG-G
ACCCCCCAGAUGGGCACUGAGACAAGGGCCCAGGCCCUACGG-GGCGCACCAGGCGCGAA
ACCUCCGCAAUGCGG-GCA----ACCGUGACGGGGUCACCCCGAGU--GCCG------CC
----GAUAA----GG-------C-GGCUGUUCCCCGCUG----------------UAA-G
A-A-------------------GGCGGGGG-AGUAAGCGGGGGGCAAGUCU-GG-UGUCA
GCCGCCGCGGUAAUACCAGCCCCGCGAGCGGUCGGGAUGCUUACUGGGCCUAAAGCGCCC
GUAGCCGGCCCGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCCCCCCCUAAAGCCCCGGGCUCAACC-
--------------------------------CGGG-GAG-UGGGGGGGAUACUACCG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GGGGGCGGGA
G-AGGCCGAGGGUA-CUCCCGGGGUAGGGGCGAAAUCCGAUAAUCCCGGGAGGACCACCA
GUGGCGAAGGCGCUCGGCUGGAACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCCGGCUGUAAACGAUGC-GGGCUAGGUGUUGGGCG
GGC---------------------------------------------------------
---UUGGA----------------------------------------------------
--------------------GCCCGCCCAGU-GCCGCAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-GGGGUGGAGCCUGCGGCUUAAUUGGAGUCAACGCCGGGAA-UCUU-
A-CCG-GGG-GC-GA-CAGCA-GGA-UGACGGC-CAGGCUGACGA--CCUU-G-CCCGA-
--------------------CGCG-CUGA-GAGGAGGUGCAUGGCCGUCGCCAGCUCGUG
CC-GUGAGGUGUCCGGUUAAGUCCGGCAACGAGCGAGACCCC-CACCC-CUAGUUGCU-A
CCCCGGGG----------------------------------------------------
------------------------------------------------------------
----------------G-CC--A-------------------------------------
------------------------------------------------------------
------------------------------------------C--CCC-G----------
--G-G---------GGCACACUAGGGGGACU-GCCG-C----CGUCCAAGG-CG-GAGGA
AGGAGGGGGCCACGGCAGGUCAGC-AUGCCCCGA-AUCCCCCGGGCUGCACGCGGGCUAC
AAUG-GCGGGGACAGCGGGA----------------------------------------
----------------------U-CCGACCCCGAAAGGGGGAGGCAA-UCCC--U-UAAA
CCCCGCCGCAGUUGGGAUCGAGGGCUGCAACUCGCCCUCGUG-AACGCGGAAUCCCUAGU
AACCGCGC-GUUAGC-AUCGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CGCUCCACCCGAG-CGGGGGAG-GGGUGAGGCCCUG-CCCCUGGGG--------------
----G-CA-A-------------------CCCCGGGGGUG----------GGGUCG-AAC
CCCUCCCCCGCGAGGGGGGAGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCU------------
>Ignicoccus_hospitalis
-------------GCGACUCCGGUUGAUCCUG-CCGGACCCGAC--CGCUAUCGGG-GUA
AGGCUAAGCCAUGGGAGUCGAACGCCC--GC---------------------CG---C-C
-------------------------G-C---GG-GCG-UGGCG-GACGGCUGAGUAACAC
GUGGCUAAC-CUACCCUCGGG---------------------AGGGGG-AUAACAC--C-
G-GGAAA-CUGGUGCUAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-GGCGGAGGCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-G-GGU-UC-CGCCCC-GAAAGGG-GCU--CGGGG----------GGG--
A-A-CG-----------CCCCGAGUCCGCCCGAGGAUGGGGCCGCG-CCCCAUCA-GGUA
--GUUGGCGGGGUAAUGGCCCG-CCAAGCCGAAGACGGGU-AGGGGCCGUGGGAGCGG-G
AGCCCCCAGAUGGGCACUGAGACAAGGGCCCAGGCCCUACGG-GGCGCACCAGGCGCGAA
AACUCCGCAAUGCGG-GCA----ACCGUGACGGGGUUACCCCGAGU--GCCC------CC
----UCUCC----GG-------G-GGCUUUUCCCCGCUG----------------UAA-A
C-A-------------------GGCGGGGGUAAUAAGCGGGGGGCAAGUCU-GG-UGUCA
GCCGCCGCGGUAAUACCAGCCCCGCGAGUGGUCGGGACGAUUAUUGGGCCUAAAGCGCCC
GUAGCCGGCCUGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UGGCCCCCCUCCUAAAGCCCCGGGCUCAACC-
--------------------------------CGGG-GAC-UGGAGGGGGUAGCGCCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GGGGGCGGGA
G-AGGCCGAGGGUA-CUCCCGGGGUAGGGGCGAAAUCCGAUAAUCCCGGGAGGACCGCCA
GUGGCGAAGGCGCUCGGCUGGAACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCCGGCUGUAAACGAUGC-GGGCUAGGUGUUGGGCG
GGC---------------------------------------------------------
---UUCGA----------------------------------------------------
--------------------GCCCGCCCAGU-GCCGCAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-GGGGUGGAGCCUGCGGCUUAAUUGGAGUCAACGCCGGGAA-CCUU-
A-CCG-GGG-GC-GA-CAGCA-GGA-UGAAGGU-CAGGCUGAAGA--CCUU-A-CCUGA-
--------------------CGCG-CUGA-GAGGAGGUGCAUGGCCGUCGCCAGCUCGUG
CC-GUGAGGUGUCCGGUUAAGUCCGGCAACGAGCGAGACCCC-CGUCC-CCAGUUGCU-A
CCCGGGGC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--CCC-C----------
--G-G---------GGCACACUGGGGAGACU-GCCG-C----CGUAUAAGG-CG-GAGGA
AGGAGGGGGCUAUGGCAGGUCAGC-AUGCCCCGA-AACCCCCGGGCUGCACGCGGGCUAC
AAUG-GCGGGGACAGCGGGU----------------------------------------
----------------------U-GCGACCCCGAAAGGGGGAGCCAA-UCCC--U-GAAA
CCCCGCCGAGGUUGGGAUCGAGGGCUGCAACUCGCCCUCGUG-AACGCGGAAUCCCUAGU
AACCGCGC-GUUAGC-AUCGCGCGGUGAACACGUCCCUGCUCCUUGCACACACCGCCCGU
CGCUCCACCCGAG-GGGACGGG-UGGUGAGGCCCCC-GUAGG------------------
----G-AA-A--------------------CUCCCGGGUA----------UCCUCG-AAC
UCCCUCCUCUCGAGGGGGGAGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCC------------
>Metallosphaera_sedula
------------------UCCGGUUGAUCCUG-CCGGACCCGAU--CGCUAUAGGG-GUA
GGGCUAAGCCAUGGGAGUCGUACGCUC-UCG---------------------GG-----A
-------------------------A-GA--GG-GCG-UGGCG-GACGGCUGAGUAACAC
GUGGCUAAC-CUGCCCUUGGG---------------------AUCUGG-AUAACCC--C-
G-GGAAA-CUGGGGCUAAUCCGGAG-----------------------------------
------------------------------------------------------------
---------CG-GG-CAAGGGAAUC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GAU-CU-CUUGCC-UAAAAGCCUCU--CGGC-----------UG---
A-U-CCC----------GUCGAGAGGCGCCCAAGGAUGGGGCUGCG-GCCCAUCA-GGCU
--GUUGGGGGAGUAAAGGUCCC-CCAAACCGAUAACGGGU-AGGGGCCGUGGGAGCGG-G
AGCCCCCAGUUGGGCACUGAGACAAGGGCCCAGGCCCUACGG-GGCGCACCAGGCGCGGA
ACGUCCCCAAUGCGG-GAA----ACCGUGAGGGCGUUACCCCUAGU--GCCC------UC
----GC-AA----GA-------G-GGCUUUUCUCCACUC----------------CAG-A
A-A-------------------GGUGGAGG-AAUAAGCGGGGGGCAAGACU-GG-UGUCA
GCCGCCGCGGUAAUACCAGCCCCGCGAGUGAUCGGGACGUUUAUUGGGCUUAAAGCGCCC
GUAGCCGGCCUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------AAAGUCACCGUUUAAAGACCCGGGCUCAACU-
--------------------------------CGGG-GAA-CGGCGGUGAUACUUACA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GGGGGCGGGA
G-AGGUCGGAGGUA-CUCCCGGAGUAGGGGCGAAAUCCUCAGAUCCCGGGAGGACCACCA
GUGGCGAAAGCGUCCGGCUAGAACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGUAGCAA
AUAGGAUUAGAUACCCUA-GUAGUCCCGGCUGUAAACGAUGC-AGGCUAGGUGUCGCGUA
GGC---------------------------------------------------------
---UUUGU----------------------------------------------------
--------------------GCCUGCGCGGU-GCCGCAGGAAAACU-GGUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-GGGGUGGAACCUGCGGCUCAAUUGGAGUCAACGCCUGGAA-UCUC-
A-CCG-GGG-GA-GA-CCGCA-GGA-UGACGGC-CAGGCUAACGA--CCUU-G-CCAGA-
--------------------CUCG-CGGA-GAGGAGGUGCAUGGCCGUCGCCAGCUCGUG
UU-GUGAAAUGUCCGGUUAAGUCCGGCAACGAGCGAGACCCC-CACUU-CUAGUUGGU-A
ACCGUCUC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--AGA-C----------
--G-G---------UCCACACUAGAAGGACU-GCCG-G----UGU-UAAAC-CG-GAGGA
AGGAGGGGGCCACGGCAGGUCAGC-AUGCCCCGA-AACUUCCGGGCCGCACGCGGGUUAC
AAUG-GCAGGGACAGCGGGA----------------------------------------
----------------------U-CCGACCCCGAGAGGGGAAGGCAA-UCCC--A-CAAA
CCCUGCCUCAGUUGGGAUCGAGGGCUGAAACUCGCCCUCGUG-AACGAGGAAUCCCUAGU
AACCGCGG-GUCAAC-AACCCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CGCUCCACCCGAG-UGGAGGGG-AAGUGAGGCCUCU-UGCCC------------------
----C-UC-G-----------------------GGGUGGG----------AGGUCG-AGC
UUCUCCUCCGCGAGGGGGGAGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCACAUU---------
>Methanocaldococcus_jannaschii
----------------AUUCCGGUUGAUCCUG-CCGGAGGCCAC--UGCUAUCGGG-GUC
CGACUAAGCCAUGCGAGUCAAGGGGCU-CCC---------------------UU---C-G
-------------------------G-GG--AG-CAC-CGGCG-CACGGCUCAGUAACAC
GUGGCUAAC-CUACCCUCGGG---------------------UGGGGG-AUAACCU--C-
G-GGAAA-CUGAGGCUAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-GGAGGAGGUC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GAU-CC-CUCCCC-GAAA-GGC----------------------G--
U-A-A-------------------GCCGCCCGAGGAUGGGGCUGCG-GCGGAUUA-GGUA
--GUUGGUGGGGUAACGGCCCA-CCAAGCCUACGAUCCGU-ACGGGCCCUGAGAGGGG-G
AGCCCGGAGAUGGACACUGAGACACGGGUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUCCGCAAUGCGC-GAA----AGCGCGACGGGGGGACCCCGAGU--GCCC------AC
GC--CC--U--GCGU-------G-GGCUUUUCCGGAGUG----------------UAA-A
C-A-------------------GCUCCGGG-AAUAAGGGCUGGGCAAGUCC-GG-UGCCA
GCAGCCGCGGUAAUACCGGCGGCCCAAGUGGUGGCCACUGUUAUUGGGCCUAAAGCGUCC
GUAGCCGGCCCGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUCUGCUUAAAUCCUGCGGCUCAACC-
--------------------------------GCAG-GGC-UGGCAGAGAUACUGCCG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GGGACCGGGA
G-AGGCCGGGGGUA-CCCCAGGGGUAGCGGUGAAAUGCGUUGAUCCCUGGGGGACCACCU
GUGGCGAAGGCGCCCGGCUGGAACGGGUCCGACGGUGAGGGACGAAGGCCAGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCUGUAAACUCUGC-GGACUAGGUGUCGCGUC
GGC---------------------------------------------------------
---UUCGG----------------------------------------------------
--------------------GCCGACGCGGU-GCCGAAGGGAAGCC-GUUAAGUC-----
-------CGCC-GCCUGGGGAGUACGG-UCGCAAGAC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACUACAA-CGGGUGGAGCCUGCGGUUUAAUUGGAUUCAACGCCGGGCA-UCUU-
A-CCA-GGG-GC-GA-CGGCA-GGA-UGAAGGC-CAGGUUGACGA--CCUU-G-CCAGA-
--------------------CGCG-CCGA-GAGGUGGUGCAUGGCCGUCGUCAGCUCGUA
CC-GUGAGGCGUCCUGUUAAGUCAGGUAACGAGCGAGACCCG-UGCCC-CAUGUUGCU-A
CCUCCUCC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GAG-G----------
--A-G---------GGCACUCAUGGGGGACC-GCCG-G----CGC-UAAGC-CG-GAGGA
AGGUGCGGGCAACGACAGGUCCGC-AUGCCCCGA-AUCCCCUGGGCUACACGCGGGCUAC
AAUG-GCCGGGACAAUGGGA----------------------------------------
----------------------C-GCGACCCCGAAAGGGGGAGCGAA-UCCC--C-UAAA
CCCGGUCGUAGUCCGGAUCGAGGGCUGUAACUCGCCCUCGUG-AAGCCGGAAUCCGUAGU
AAUCGCGC-CUCACC-AUGGCGCGGUGAAUGCGUCCCUGCUCCUUGCACACACCGCCCGU
CACGCCACCCGAG-UUGAGCCC-AAGUGAGGCCCUG-UCC--------------------
----G-CA-A-------------------------GGGCA----------GGGUCG-AAC
UUGGGUUCAGCGAGGGGGGCGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCC-------------
>Methanococcoides_burtonii
----------------ACUCUGGUUGAUCCUG-CCAGAGGUUAC--UGCUAUCGGU-GUU
CGACUAAGCCAUGCGAGUCAUAUGUUC-------------------------UU---C-G
U------------------------------GA-ACA-UGGCG-GACUGCUCAGUAACAC
GUGGAUAAC-CUGCCCUUAGG---------------------UUUGGC-AUAACUC--C-
G-GGAAA-CUGGAGAUAAUUCCGAA-----------------------------------
------------------------------------------------------------
---------UA-GG-UCAAAUAUGC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GCU-UU-UUGAUC-AAAA-GAC----------------------U--
U-C-G-------------------GUUGCCUAAGGAUGGAUCUGCG-GUCUAUCA-GGUU
--GUAGUGGGUGUAACGUACCU-ACUAGCCUACGACGGAU-AUGGGUUGUGAGAGCAA-G
AGCCCAGAGAUGGAUUCUGAGACAUGAAUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
AUCUUUACAAUGCGG-GAA----ACCGCGAUAAGGGGACACCGAGU--GCCA------GC
A---UU-UA---UGU-------U-GGCUGUCCACAUGUG----------------UAA-A
C-G-------------------GCAUGUGUUAGCAAGGGCCGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAACACCGGCGGCCCGAGUGGUAAUCACUUUUAUUGGGUCUAAAGGGUCC
GUAGCCGGUUUGA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UCAGUUCUUCGGGAAAUCUGACAGCUCAACU-
--------------------------------GUUA-GGCUUCCGGGGAAUACUGUCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GGGACCGGGA
G-AGGUAAGAGGUA-CUACAGGGGUAGGAGUGAAAUCUUGUAAUCCCUGUGGGACCACCA
GUGGCGAAGGCGUCUUACCAGAACGGGUCCGACGGUGAGGGACGAAAGCUGGGGGCACGA
ACCGGAUUAGAUACCCGG-GUAGUCCCAGCCGUAAACGAUGU-UCGCUAGGUGUCAGGGG
CGG---------------------------------------------------------
---UGCGA----------------------------------------------------
--------------------CCGCUUCUGGU-GCCGUAGGGAAGCC-GUGAAGCG-----
-------AACC-ACCUGGGAAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACUACAA-CGGGUGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGAAA-ACUC-
A-CCG-GGG-GC-GA-CAGCA-AAA-UGUAGGU-CAAGCUAAAGA--CUUU-A-CCUGA-
--------------------AUCG-CUGA-GAGGAGGUGCAUGGCCGUCGUCAGUUCGUA
CU-GUGAAGCAUCCUGUUAAGUCAGGCAACGAGCGAGACCCG-UGCCC-ACUGUUGCC-A
GCAUGUCC----------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GAUGA----------
--U-G---------GGUACUCUGUGGGGACC-GCUG-G----UGC-UAAAC-CA-GAGGA
AGGUGCGGGCUACGGUAGGUCAGU-AUGCCCCGA-AUCUCCCGGGCUACACGCGGGCUAC
AAUG-GUUGGGACAAUGGGU----------------------------------------
----------------------U-CCUACACCGAAAGGUGAUGGCAA-UCUC--C-UAAA
CCCAACCGUAGUUCGAAUUGAGGACUGUAACUCGUCCUCAUG-AAGCUGGAAUCCGUAGU
AAUCGCGU-UUCAAC-AUAGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAACCACCCGAG-UGAGGUAU-GGGUGAGGGCACG-GAC--------------------
----U-UA-G-------------------------UGCCG----------UGUUCG-AAC
CUAAAUUUCGCAAGGGGGGUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Methanococcus_aeolicus
------------------UCCGGUUGAUCCCG-CCGGAGGCUAC--UGCUAUUGGG-AUU
CGACUAAGCCAUGCGAGUCU-AUGGAC-------------------------UU---C-G
-------------------------------GU-CCA-UGGCG-GACGGCUCAGUAACAC
GUGGCUAAC-CUACCCUCAGG---------------------UGGGGC-AUAACCU--C-
G-GGAAA-CUGAGGAUAAUACCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-AAAAGAGGUU-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-AAU-CC-UUUUCU-GAAA-GG-----------------------A--
U-A-U--------------------CCGCCUGAGGAUGGGGCUGCG-UCCGAUUA-GGUA
--GUUGGUGGGGUAAUGGCCCA-CCAAGCCUACGAUCGGU-ACGGGCCUUGAGAGAGG-G
AGCCCGGAGAUGGGGACUGAGACACGGCCCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUCCACAAUGCAC-GAA----AGUGCGAUGGGGGAAUCCCAAGU--GCCU------AU
GC--AC--A--GCAU-------A-GGCUUUUCCCAAGUC----------------UAA-A
C-A-------------------ACUUGGGG-AAUAAGGGCUGGGCAAGUCC-GG-UGCCA
GCAGCCGCGGUAACACCGGCGGCCCGAGUGGUAGCCACUCUUAUUGGGCCUAAAGCGUCC
GUAGCCUGUUCAG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUCUGUUUAAAUCCUACGGCUUAACC-
--------------------------------GUAG-GGC-UGGCAGAGAUACUGCUG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GGGACCGGGA
G-AGGAAGAGGGUA-CUUCGGGGGUAGCGGUGAAAUGCGUUGAUCCCUGAGGGACCACCU
AUGGCGAAGGCACUCUUCUGGAACGGGUCCGACGGUGAGGGACGAAAGCCAGGGGAGCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCCGUAAACUUUGC-GAACUAGGUGUCAUCUG
GAC---------------------------------------------------------
---CUCGG----------------------------------------------------
--------------------GUCCAGGUGGU-GCCGAAGGGAAGCC-AUUAAGUU-----
-------CGCC-GCCUGGGGAGUACGG-UCGCAAGAC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-CGGGUGGAGCCUGCGGUUUAAUUGGAUUCAACGCCGGGCA-UCUC-
A-CCA-GGA-GC-GA-CAGCA-UGA-UGAAGGU-CAGGUUGACGA--CCUU-A-CCUGA-
--------------------AGCG-CUGA-GAGGUGGUGCAUGGCCAUCGUCAGCUCGUA
CC-GCGAGGCGUCCUGUUAAGUCAGGUAACGAGCGAGACCCG-UGCCC-UAUGUUGCU-A
CUUUCUUC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--AGG-A----------
--A-A---------GGCACUCAUAGGGGACC-GCUG-G----UGU-UAAAC-CA-GAGGA
AGGAGCGGGCAACGAUAGGUCCGC-AUGCCCCGA-AUCUCCUGGGCUACACGCGGGCUAC
AAUG-GUUAGGACAAUGGGA----------------------------------------
----------------------A-GCAACCCUGAGAAGGGAAGCAAA-UCUC--U-UAAA
CCUAAUCGUAGUUCGGAUCGUGGGCUGUAACUCGCCCACGUG-AAGCUGGAAUCCGUAGU
AAUCGCAG-UUCAUA-AUACUGCGGUGAAUGUGUCCCUGCUCCUUGCACACACCGCCCGU
CACACCACCCGAG-UUGGGUUG-AGGUGAGGCCCUA-GCC--------------------
----U-UU---------------------------GGCUA----------AGGUCG-AAC
CUGGGCUCAGCAAGGGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCU------------
>Methanocorpusculum_labreanum
------------------UCUGGUUGAUCCUG-CCAGAGGCCAU--UGCUAUCAGG-GUU
UGACUAAGCCAUGCGAGUCGAGAGGU--------------------------GU---A-A
G-------------------------------A-CCU-CGGCA-UACUGCUCAGUAACAC
GUGGUUAAC-CUGCCCUAAGG---------------------UGGAGA-AUACUCC--C-
G-GGAAA-CUGGGGCUAAUGCUCCA-----------------------------------
------------------------------------------------------------
---------UA-GU-GGAUAUGUCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GGU-AU-AUCCUC-GAAA--GA----------------------U--
C-C-G-------------------UC-GCCUUAGGAUGGGACUGCG-UCCGAUUA-GGUU
--GUUGGCGGGGUAACGGCCCA-CCAAGCCUUUUAUCGGU-ACGGGUUGUGGGAGCAA-G
AUCCCGGAGAUGGAUUCUGAGACAUGAAUCCAGGCCCUACGG-GGCGCAGCAGGCGCGCA
AACUUUACAAUGCGA-GCA----AUCGUGAUAAGGAAACCCUGAGU--GCCU------GU
----CG-AU----GC-------A-GGCUGUUCAUAUAUC----------------UAA-A
U-C-------------------AUAUGUGA-AGAAAGGGCAGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAAUACCGGCUGCUCGAGUGAUGGCCACUAUUACUGGGUUUAAAGCGUCC
GUAGCUUGACUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAGGUCUCUUGGGAAAUCUUCGCGCUCAACG-
--------------------------------UGAA-GGCGUCUAAGAGAUACCGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GUCUU--GGAACUGGGA
G-AGGUAAACCGUA-CUUCGGGGGUAGGAGUGAAAUCUUGUAAUCCUCGAGGGACGACCU
AUGGCGAAGGCAGUUUACCAGAACAGCUUCGACAGUGAGGGACGAAAGCUGGGGGAGCAA
ACGGGAUUAGAUACCCCG-GUAGUCCCAGCCGUAAACAAUGU-GCGUUAGGUGUGUCGGU
AAC---------------------------------------------------------
---CACGU----------------------------------------------------
--------------------GUUACUGAUGC-GCCGAAGAGAAAUC-GUGAAACG-----
-------CACC-ACCUGGGAAGUACGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-CAGGUGGAGCCUGCGGUUUAAUUGGAUUCAACGCCGGACA-UCUC-
A-CCG-GAU-AA-GA-CAGCU-GAA-UGAUUGU-CAAUCUGAAGG--UUUU-A-CAUGA-
--------------------CUAG-CUGA-GAGGAGGUGCAUGGCCGUCGUCAGUUCGUA
CU-GUGAAGCAUCCUGUUAAGUCAGGCAACGAGCGAGACCCA-CGCCG-ACAAUUGCC-A
GCAGCAUC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--AUGGC----------
--U-G---------GGGACAUUGUCGGGACC-GCCU-C----UGC-UAAAG-GG-GAGGA
AGGAAUGGGCAACGGUAGGUCAGC-AUGCCCCGA-AUUAUCCGGGCUACACGCGGGCUAC
AAUG-GACGGGACAAUGGGU----------------------------------------
----------------------A-ACAACACCGAAAGGUGCAGUCAA-UCUC--C-GAAC
CCCGCCCUUAGUUAGGAUUGCGGGUUGCAACUCACCCGCAUG-AAUCUGGAAUCUGUAGU
AAUCGCGU-UUCACU-AUAGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAACCAUCCUAG-UGGGGUUU-GGAUGAGUCCCUG-GU---------------------
----C-UU-U--------------------------GCCG----------GGGUCG-AAU
CUAGGUUCCGUGAGGAGGGUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Methanoculleus_marisnigri
------------------UCUGGUUGAUCCUG-CCAGAGGUCAC--UGCUAUCGGG-GUU
CGAUUAAGCCAUGCGAGUCGAGAGGG--------------------------UU---C-G
G------------------------------CC--CU-CGGCG-UACUGCUCAGUAACAC
GUGGAUAAC-CUGCCCUAAGG---------------------AAGGGG-AUAACCC--C-
G-GGAAA-CUGGGAAUAAUACCCUA-----------------------------------
------------------------------------------------------------
---------UA-GG-UUACAGAUGC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GCU-CU-GUAACU-CAAA--GU----------------------U--
C-A-G-------------------GC-GCCUUAGGAUGGAUCUGCG-GCCGAUUA-GGUU
--GUUGUUGGGGUAACGGCCCA-ACAAGCCAGUAAUCGGU-ACGGGUUGUGGGAGCAA-G
AGCCCGGAGUUGGAUUCUGAGACACGAAUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
AACUUUACAAUGCGG-GCA----ACCGUGAUAAGGGAACCUCGAGU--GCCU------GU
----AU-AU----GC-------A-GGCUGUCCAGGUGUC----------------UAA-A
A-C-------------------ACACCUGA-AGAAAGGGCCGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAAUACCGGCGGCUCGAGUGGUGGCCACUUUUAUUGGGCUUAAAGCGUUC
GUAGCUGGGUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUCUUGGGAAAUCCGGCGGCUCAACC-
--------------------------------GUCG-GGCGUCUAAGAGAUACUGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GUCUU--GGAACCGGGA
G-AGGUGAGGGGUA-CUUCGGGGGUAGGAGUGAAAUCCUGUAAUCCUCGAGGGACCACCU
GUGGCGAAGGCGCCUCACCAGAACGGCUUCGACAGUGAGGGACGAAAGCUGGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCCAGCCGUAAACGAUGU-GCGUUAGGUGUAUCGAC
GAC---------------------------------------------------------
---CACGA----------------------------------------------------
--------------------GUCGUCGAGGU-GCCGAAGGGAAACC-GUGAAACG-----
-------UACC-GCCUGGGAAGUACGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-CAGGUGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGGAA-UCUC-
A-CCG-GAU-AA-GA-CAGCG-GAA-UGAUUGC-CGGGCUGAAGA--CUCU-G-CAUGA-
--------------------CUAG-CUGA-GAGGAGGUGCAUGGCCGUCGUCAGUUCGUA
CU-GUGAAGCAUCCUGUUAAGUCAGGCAACGAGCGAGACCCA-CGCCA-ACAGUUGCC-A
GCAUGAUC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--AUUGA----------
--U-G---------GGGACACUGUUGGGACC-GCCU-C----UGC-UAAAG-AG-GAGGA
AGGAAUGGGCAACGGUAGGUCAGC-AUGCCCCGA-AUUAUCCGGGCUACACGCGGGCUAC
AAUG-GGCAGGACAAUGGGU----------------------------------------
----------------------A-UCGACACCGAAAGGUGGAGGCAA-UCUC--C-UAAA
CCUGUCCGUAGUUCGGAUUGUGGGCUGUAACUCGCCCACAUG-AAGCUGGAAUCUGUAGU
AAUCGCGU-UUCAAA-AUAACGCGGUGAAUGUGUCCCUGCUCCUUGCACACACCGCCCGU
CAAACCACCCGAG-UGGGGUUU-GGAUGAGGCUGCG-GU---------------------
----C-GU-U--------------------------GCCG----------CAGUCG-AAU
CUAGGUUCCGCAAGGGGGGUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Methanopyrus_kandleri
----------------ACUCCGGUUGAUCCUG-CCGGAGGCCAC--CGCUAUCGGG-GUC
CGACUAAGCCAUGCAAGUCGAGGGCCG-CCCG--------------------GC---A-A
---------------------UG-GG-GG--CG-GCC-CGGCG-GACGGCUCAGUAACAC
GUGGGUAAC-CUACCCUCGGG---------------------ACGGGG-AUAACCC--C-
GGCGAAA-GUGGGGCUAAUCCCCGA-----------------------------------
------------------------------------------------------------
---------UA-GG-CGGGGCGGCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-C-GGU-CC-UCCGCC-GAAA-GGGCCC--GGGC-----------CCA--
U-G-CC-----------GCCCGGGUCCGCCCGAGGAUGGGCCUGCG-GCCGAUUA-GGUA
--GUUGGCGGGGUAACGGCCCG-CCAAGCCGAUAAUCGGU-ACGGGCGGUGAGAGCCG-G
AGCCCGGAGACGGGGACUGAGACAAGGCCCCGGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUCCGCAAUGCGG-GCA----ACCGCGACGGGGGGACCCCGAGU--GCCG------UC
GGGGCAAAGCCCCGG-------C-GGCUGUACCGGGGUG----------------UAA-A
A-A-------------------GCCCCGGGUAGAAAGCGGCGGGCAAGACC-GC-UGCCA
GCCGCCGCGGUAAUAGCGGCGCCGCAAGUGGUGGCCGCUUUUAUUGGGCCUAAAGGGGCC
GUAGCCGGUCCCG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UGGGUCCCCGCCGAAAGCCCGCGGCUUAACC-
--------------------------------GCGG-GAGUCGGCGGGGAAACUGCGG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GGGACCGGGA
G-AGGCCGGAGGUA-CCCCCGGGGUAGGGGUGAAAUCCUGUCAUCCCGGGGGGACCGCCA
GUGGCGAAGGCGUCCGGCUGGAACGGGUCCGACGGUGAGGGCCGAAAGCCGGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCCGGCUGUAAACGAUGC-GGACUAGGUGUUGGGGC
GGC---------------------------------------------------------
---CACGA----------------------------------------------------
--------------------GCCGCCCCAGU-GCCGUAGGGAAGCC-GUUAAGUC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-CCGGUGGAGCCUGCGGUUUAAUUGGAUUCAACGCCGGAAA-CCUU-
A-CCG-GGG-GC-GA-CAGCA-GGA-UGAAGGC-CAGGUUGACGA--CCUU-G-CCGGA-
--------------------CGAG-CUGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUG
CC-GUGAGGUGUCCUGUUAAGUCAGGUAACGAGCGAGACCCC-CGCCC-GCAGUUGCC-A
GCGGGCCCC---------------------------------------------------
------------------------------------------------------------
----------------G-UA--A-------------------------------------
------------------------------------------------------------
-----------------------------------------GG--GGCGC----------
--C-G---------GGCACUCUGCGGGGAUC-GCCG-C----CGU-UAAGG-CG-GAUGA
AAGUGGGGGCGACGGCAGGUCCGU-AUGCCCCGA-AACCCCCGGGCUACACGCGGGCUAC
AAUG-GCGGGGACAAUGGGA----------------------------------------
----------------------U-CCGACCCCGAAAGGGGGAGGAAA-UCCC--C-UAAA
CCCCGUCGUAGUUCGGAUUGCGGGCUGCAACUCGCCCGCAUG-AAGGUGGAAUCGGUAGU
AACCGUGC-CUCAGA-AUGGCACGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CACGCCACCCGAG-CCCCCCGG-GGGCAAGCCCCCG-GUCC-------------------
----G-CA-A------------------------GGGCUG----------GGGGCG-AGC
CCCCGGGGGGUGAGGGGGGCGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUC--------------
>Methanoregula_boonei
------------------UCUGGUUGAUCCUG-CCAGAGGCCAC--UGCUAUCGGA-GUU
CGAUUAAGCCAUGCGAGUCGAGAGGU--------------------------GU---A-A
G-------------------------------A-CCU-CGGCA-UACUGCUCAGUAACAC
GUGGACAAC-CUACCCUGAAG---------------------AGGGGG-AUAACCC--C-
G-GGAAA-CUGGGGAUAAUACCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-CUAUGGAUGC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GCU-CU-GUAGUU-GAAA--GG----------------------U--
C-C-G-------------------CC-GCUUCAGGAUGGGUCUGCG-GCCGAUUA-GGUU
--GUUGUUGGGGUAACGGCCCA-ACAAGCCUGUAAUCGGU-ACGGGUUGUGGGAGCAA-G
AGCCCGGAGAUGGAUUCUGAGACACGAAUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
AACUUUGCAAUGCGA-GAA----AUCGUGACAAGGGAACUCCGAGU--GCCU------GU
----AA-AA----UC-------A-GGCUGUCCGUCAGUG----------------UAA-A
U-A-------------------ACUGGCGA-AGAAAGGGCCGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAAUACCGGCGGCUCGAGUGGUGGCCACUAUUACUGGGCUUAAAGCGUUC
GUAGCUGGCUUGU-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUCUGGGGAAAUCUUCCGGCUUAACC-
--------------------------------GGAA-GGCGUCUCAGGGAUACUGGCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GGGACCGGAA
G-AGGUGAGAGGUA-CUCCAGGGGUAGGAGUGAAAUCCUGUAAUCCUUGGGGGACCACCU
GUGGCGAAGGCGUCUCACCAGGACGGCUCCGACAGUGAGGAACGAAAGCUGGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCCAGCUGUAAACGAUGC-GCGUUAGGUGUAUCGGU
GAC---------------------------------------------------------
---CACGA----------------------------------------------------
--------------------GUCACCGAGGU-GCCGAAGAGAAAUC-GUGAAACG-----
-------CGCC-GCCUGGGAAGUACGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-CGGGUGGAGCCUGCGGUUUAAUCGGACUCAACGCCGGGAA-ACUC-
A-CCG-GAC-AA-GA-CAGCU-GAA-UGAUAGU-CGGGCUGAAGA--CUCU-A-CUUGA-
--------------------CUAG-CUGA-GAGGAGGUGCAUGGCCGUCGUCAGUUCGUA
CU-GUGAAGCAUCCUGUUAAGUCAGGCAACGAGCGAGACCCA-CGCCA-ACAGUUGCU-A
GCUCGUCC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GAUGG----------
--A-G---------AGGACACUGUUGGGACC-GCCU-C----UGC-UAAAG-AG-GAGGA
AGGAAUGGGCAACGGUAGGUCAGC-AUGCCCCGA-AUUGUCCGGGCUACACGCGGGCUAC
AAUG-GGUGGGACAAUGGGU----------------------------------------
----------------------A-UCGACACCGAAAGGUGAAGGCAA-UCUC--C-UAAA
CCCAUCCUUAGUUCGGAUUGUGGGCUGCAACUCGCCCACAUG-AAGCUGGAAUCCGUAGU
AAUCGUGU-UUCAAA-AUAGCACGGUGAAUAUGUCCCUGCUCCUUGCACACACCGCCCGU
CAAACCACCCGAG-UGAGGUCU-UGAUGAGGUUGUC-GU---------------------
----U-UU-C-------------------------UGCGG----------CGAUCG-AAU
CUAGGUUUUGCAAGGGGGGUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Methanosaeta_thermophila
------------------ACUGGUUGAUCCUG-CCAGAGGUUAC--UGCUAUCGGG-GUC
CGACUAAGCCAUGCGAGUUGAAUGUCC-------------------------GA---A-A
-------------------------------GG-GCA-UAGCG-CACUGCUCAGUAACAC
GUGGACAAC-CUGCCCUGAGG---------------------ACUGGA-AUAAUCC--C-
G-GGAAA-CUGGGGGUAAUUCCAGA-----------------------------------
------------------------------------------------------------
---------UA-UG-UCAGAACUCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GGG-UU-CUGGCA-GAAAG-GC----------------------U--
C-C-G-------------------GC-GCCUCAGGAUGGGUCUGCG-GCCUAUCAGGGUA
--GUAGUGGGUGUAACGUACCU-ACUAGCCUACGACGGGU-ACGGGUUGUGAGAGCAA-G
AGCCCGGAGAUGGAUUCUGAGACAUGAAUCCAGGCCCUACGG-GGUGCAGCAGGCGCGAA
AACUUUACAAUGCGG-GCA----ACCGCGAUAAGGGGACCUCGAGU--GCUG------GG
UU--AC--A--AACC-------U-GGCUGUUGGGCUGCC----------------UAA-A
A-A-------------------GCAGUCUAUAGCAAGGGCCGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAACACCGGCGGCUCGAGUGGUAACCGCUAUUAUUGGGUCUAAAGGGUCU
GUAGCCGGCCGAC-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUCUUGGGAAAUCUGGCAUCUCAAGU-
--------------------------------GUCA-GGCUGCCAGGGGAUACUGGUC--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GGGACCGGGA
G-AGGUGAGAGGUA-CCUCGGGGGUAGGGGUGAAAUCUUGUAAUCCUCGAGGGACCACCA
GUGGCGAAGGCGUCUCACCAGAACGGAUCCGACGGCAAGGGACGAAAGCUAGGGGCACGA
ACCGGAUUAGAUACCCGG-GUAGUCCUAGCCGUAAACGAUAC-UCGCUAGGUGUCGGCCA
CGG---------------------------------------------------------
---UGCGA----------------------------------------------------
--------------------CCGUGGUCGGU-GCCGUAGGGAAGCC-GUGAAGCG-----
-------AGCC-ACCUGGGAAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-CGGGUGGAGCCUGCGGUUUAAUUGGAUUCAACGCCGGAAA-GCUU-
A-CCG-GGG-GC-GA-CAGCA-AUA-UGAAGGU-CAGGCUGAAGA--CCUU-A-CCGGA-
--------------------UUCG-CUGA-GAGGUGGUGCAUGGCCGUCGUCAGUUCGUA
CU-GUGAAGCAUCCUGUUAAGUCAGGCAACGAGCGAGACCCA-CGCCC-ACAGUUGCC-A
GCGAUCCC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GGAGG----------
--C-G---------GGUACUCUGUGGGGACC-GCCG-C----UGC-UAAAG-CG-GAGGA
AGGAGUGGGCAACGGUAGGUCAGU-AUGCCCCGA-AUCCCCCGGGCUACACGCGGGCUAC
AAUG-GUCGGUACAAUGGGU----------------------------------------
----------------------A-UCGACCCCGAAAGGGGUAGGCAA-UCCC--C-UAAA
ACCGAUCGUAGUUCGGAUUGAGGGCUGAAACUCGCCCUCAUG-AAGCUGGAAUCCGUAGU
AAUCGCGU-UUCAAC-AGAACGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAACCACCCGAG-UAGGGUCC-GGAUGAGGGUGUA-UCC--------------------
----U-CU---------------------------UGAUA----------CAUUCG-AAU
CCGGGCUUUGCAAGGGGGGUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Methanosarcina_acetivorans
----------------AUUCUGGUUGAUCCUG-CCAGAGGUUAC--UGCUAUCGGU-GUU
CGCCUAAGCCAUGCGAGUCAUAUGUUC-------------------------UU---U-G
U------------------------------GA-ACA-UGGCG-UACUGCUCAGUAACAC
GUGGAUAAC-CUGCCCUUGGG---------------------UCCGGC-AUAACCC--C-
G-GGAAA-CUGGGGAUAAUACCGGA-----------------------------------
------------------------------------------------------------
---------UA-AC-GCACAUAUGC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GCU-UU-CUGCGU-AAAACGGA----------------------U--
U-C-G-------------------UCUGCCCAAGGAUGGGUCUGCG-GCCUAUCA-GGUA
--GUAGUGGGUGUAACGUACCU-ACUAGCCGACAACGGGU-ACGGGUUGUGAGAGCAA-G
AGCCCGGAGAUGGAUUCUGAGACAUGAAUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
AACUUUACAAUGCGG-GAA----ACCGUGAUAAGGGGACACCGAGU--GCCA------GC
AU--CA--U--AUGC-------U-GGCUGUCCGGAUGUG----------------UAA-A
A-U-------------------ACAUCUGUUAGCAAGGGCCGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAACACCGGCGGCCCGAGUGGUGAUCGUGAUUAUUGGGUCUAAAGGGUCC
GUAGCCGGUUUGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UCAGUCCUCCGGGAAAUCUGACAGCUCAACU-
--------------------------------GUUA-GGCUUUCGGGGGAUACUGCCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GGAACCGGGA
G-AGGUAAGAGGUA-CUACAGGGGUAGGAGUGAAAUCUUGUAAUCCCUGUGGGACCACCU
GUGGCGAAGGCGUCUUACCAGAACGGGUUCGACGGUGAGGGACGAAAGCUGGGGGCACGA
ACCGGAUUAGAUACCCGG-GUAGUCCCAGCCGUAAACGAUGC-UCGCUAGGUGUCAGGCA
UGG---------------------------------------------------------
---CGCGA----------------------------------------------------
--------------------CCGUGUCUGGU-GCCGCAGGGAAGCC-GUGAAGCG-----
-------AGCC-ACCUGGGAAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACAACAA-CGGGUGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACA-ACUC-
A-CCG-GGG-AC-GA-CAGCA-AUA-UGUAGGC-CAGGCCGAAGA--CCUU-G-CCUGA-
--------------------AUCG-CUGA-GAGGAGGUGCAUGGCCGUCGCCAGUUCGUA
CU-GUGAAGCAUCCUGUUAAGUCAGGCAACGAGCGAGACCCG-UGCCC-ACUGUUACC-A
GCAUGUCC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GACGA----------
--U-G---------GGUACUCUGUGGGGACC-GCCG-G----UGU-UAAAU-CG-GAGGA
AGGUGCGGGCCACGGUAGGUCAGU-AUGCCCCGA-AUUUCCCGGGCUACACGCGGGCUAC
AAUG-AAUGGGACAAUGGGU----------------------------------------
----------------------C-CCUCCCCUGAAAAGGGCUGGUAA-UCUC--A-CAAA
CCCAUCCGUAGUUCGGAUCGAGGGCUGUAACUCGCCCUCGUG-AAGCUGGAAUCCGUAGU
AAUCGCGU-UUCAAU-AUAGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAACCACCCGAG-UGAGGUAU-GGGUGAGGGCACG-GAC--------------------
----U-UC--------------------------GUGCCG----------UGUUCG-AAC
CUGAAUUUUGCAAGGGGGGUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Methanosarcina_barkeri
----------------AUUCUGGUUGAUCCUG-CCAGAGGUUAC--UGCUAUCGGU-GUU
CGUCUAAGCCAUGCGAGUUAUAUGUUC-------------------------UU---C-G
U------------------------------GA-ACA-UGGCG-UACUGCUCAGUAACAC
GUGGAUAAC-CUGCCCUUGGG---------------------UCCGGC-AUAACCC--C-
G-GGAAA-CUGGGGAUAAUUCCGGA-----------------------------------
------------------------------------------------------------
---------UA-AC-GCACAUAUGC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GCU-UU-AUGCGU-AAAAUGGA----------------------U--
U-C-G-------------------UCUGCCCAAGGAUGGGUCUGCG-GCCUAUCA-GGUA
--GUAGUGGGUGUAAUGUACCU-ACUAGCCUACAACGGGU-ACGGGUUGUGAGAGCAA-G
AGCCCGGAGAUGGAUUCUGAGACAUGAAUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
AACUUUACAAUGCGG-GAA----ACCGUGAUAAGGGGACACCGAGU--GCUA------GC
AU--CA--U--AUGC-------U-GGCUGUCCAGGUGUG----------------UAA-A
A-U-------------------ACACUUGUUAGCAAGGGCCGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAACACCGGCGGCCCGAGUGGUGAUCGUGAUUAUUGGGUCUAAAGGGUCC
GUAGCCGGUUUGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UCAGUCCUCCGGGAAAUCUGAUAGCUCAACU-
--------------------------------AUUA-GGCUUUCGGGGGAUACUGCCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GGAACCGGGA
G-AGGUAAGAGGUA-CUACAGGGGUAGGAGUGAAAUCUUGUAAUCCCUGUGGGACCACCU
GUGGCGAAGGCGUCUUACCAGAACGGGUUCGACGGUGAGGGACGAAAGCUGGGGGCACGA
ACCGGAUUAGAUACCCGG-GUAGUCCCAGCCGUAAACGAUGC-UCGCUAGGUGUCAGGCA
UGG---------------------------------------------------------
---CGCGA----------------------------------------------------
--------------------CCGUGUCUGGU-GCCGCAGGGAAGCC-GUGAAGCG-----
-------AGCC-ACCUGGGAAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACAACAA-CGGGUGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACA-ACUC-
A-CCG-GGA-AC-GA-CAGCA-AUA-UGUAGGU-CAGGCCGAAGA--CCUU-A-CCUGA-
--------------------AUCG-CUGA-GAGGAGGUGCAUGGCCGUCGCCAGUUCGUA
CU-GUGAAGCAUCCUGUUAAGUCAGGCAACGAGCGAGACCCG-UGCCC-ACUGUUACC-A
GCAUAUCC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GAUGA----------
--U-G---------GGUACUCUGUGGGGACC-GCCG-G----UGU-UAAAU-CG-GAGGA
AGGUGCGGGCUACGGUAGGUCAGU-AUGCCCCGA-AUUUCCCGGGCUACACGCGGGCUAC
AAUG-AAUGGGACAAUGGGC----------------------------------------
----------------------C-CCUCCCCUGAAAAGGGCUGGUAA-UCUC--A-CAAA
CCCAUCCUUAGUUCGGAUCGAGGGCUGUAACUCGCCCUCGUG-AAGCUGGAAUCCGUAGU
AAUCGCGU-UUCAAU-AUAGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAACCACCCGAG-UGAGGUAU-GGGUGAGGGCACG-AAC--------------------
----A-UC--------------------------GUGUCG----------UGUUCG-AAC
CUGUGCUUUGCAAGGGGGGUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Methanosarcina_mazei
----------------AUUCUGGUUGAUCCUG-CCAGAGGUUAC--UGCUAUCGGU-GUU
CGCCUAAGCCAUGCGAGUCAUAUGUA--------------------------GC---A-A
--------------------------------U-ACA-UGGCG-UACUGCUCAGUAACAC
GUGGAUAAC-CUGCCCUUGGG---------------------ACCGGC-AUAACCC--C-
G-GGAAA-CUGGGGAUAAUUCCGGA-----------------------------------
------------------------------------------------------------
---------UA-AC-GCAUAUUUGC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GCU-UU-AUGCGU-CAAAAGGA----------------------U--
U-C-G-------------------UCUGCCCAAGGAUGGGUCUGCG-GCCUAUCA-GGUA
--GUAGUGGGUGUAAUGUACCU-ACUAGCCAGCGACGGGU-ACGGGUUGUGAGAGCAA-G
AGCCCGGAGAUGGAUUCUGAGACAUGAAUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
AACUUUACAAUGCGG-GAA----ACCGUGAUAAGGGGACACCGAGU--GCCA------GC
AU--CA--U--AUGC-------U-GGCUGUCCGGAUGUG----------------UAA-A
A-U-------------------ACAUCCGUUAGCAAGGGCCGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAACACCGGCGGCCCGAGUGGUGAUCGUGAUUAUUGGGUCUAAAGGGUCC
GUAGCCGGUUUGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UCAGUCCUCCGGGAAAUCUGAUAGCUCAACU-
--------------------------------AUUA-GGCUUUCGGGGGAUACUGCCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GGAACCGGGA
G-AGGUAAGAGGUA-CUACAGGGGUAGGAGUGAAAUCUUGUAAUCCCUGUGGGACCACCU
GUGGCGAAGGCGUCUUACCAGAACGGGUUCGACGGUGAGGGACGAAAGCUGGGGGCACGA
ACCGGAUUAGAUACCCGG-GUAGUCCCAGCCGUAAACGAUGC-UCGCUAGGUGUCAGGCA
UGG---------------------------------------------------------
---CGCGA----------------------------------------------------
--------------------CCGUGUCUGGU-GCCGCAGGGAAGCC-GUGAAGCG-----
-------AGCC-ACCUGGGAAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACAACAA-CGGGUGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACA-ACUC-
A-CCG-GGG-GC-GA-CAGCA-AUA-UGUAGGC-CAAGCUGAAGA--CUUU-G-CCUGA-
--------------------AUCG-CUGA-GAGGAGGUGCAUGGCCGUCGCCAGUUCGUA
CU-GUGAAGCAUCCUGUUAAGUCAGGCAACGAGCGAGACCCG-UGCCC-ACUGUUACC-A
GCAUGUCC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GACGA----------
--U-G---------GGUACUCUGUGGGGACC-GCCG-A----UGU-UAAAU-CG-GAGGA
AGGUGCGGGCCACGGUAGGUCAGU-AUGCCCCGA-AUCUCCCGGGCUACACGCGGGCUAC
AAUG-GAUGGGACAAUGGGU----------------------------------------
----------------------C-CCUCCCCUGAAAAGGGCUGGUAA-UCUC--A-CAAA
CCCAUUCGUAGUUCGGAUCGAGGGCUGUAACUCGCCCUCGUG-AAGCUGGAAUCCGUAGU
AAUCGCGU-UUCAAU-AUAGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAACCACCCGAG-UGAGGUAU-GGGUGAGGGCACG-GAC--------------------
----U-UC--------------------------GUGCCG----------UGUUCG-AAC
CUGUGCUUUGCAAGGGGGGUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCC-------------
>Methanosphaera_stadtmanae
-----AAUAGUGUGUAAAUCCGUUUGAUCCUG-GCGGAAGCUAC--UGCUAUUGGG-AUU
CGAUUAAGCCAUGCAAGUCGAAUGAAC-------------------------CU---A--
-------------------------------GU-UCA-UGGCA-UACGGCUCAGUAACAC
GUGGAUAAC-UUACCCUUAGG---------------------ACCGGG-AUAACUU--U-
G-GGAAA-CUGAAGAUAAUACUGGA-----------------------------------
------------------------------------------------------------
---------UA-UU-AGGUUAUGCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GGU-UU-ACCUUU-GAAA-UGU----------------------A-U
U-U-U-------------------UCG-CCUAAGGAUAGAUCUGCG-GCUGAUUA-GGUC
--GUUGGUGGGGUAAUGGCCCA-CCAAGCCGAUGAUCGGU-ACGGGUUGUGAGAGCAA-G
AGCCCGGAGAUGGAACCUGAGACAAGGUUCCAGACCCUACGG-GGUGCAGCAGGCGCGAA
ACCUCCGCAAUGUAC-GCA----AGUGCGACGGGGGGAUCCCAAGU--GUUA------UU
CU--UA-AC--AGAA-------U-AACUUUUCAUUAGUG----------------UAA-A
A-A-------------------GCUUUUAG-AAUAAGAGCUGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAACACCGGCAGCUCAAGUGGUAGCUGUUUUUAUUGGGCCUAAAGCGUUC
GUAGCCGGUUUGA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUUUGGUGAAAGCUUGUAGCUUAACU-
--------------------------------AUAA-GAAUUGCUGAAGAUACUGUCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GAAGUCGGGA
G-AGGUUAGAGGUA-CUACCGGGGUAGGGGUGAAAUCCUAUAAUCCUGGGAGGACCACCU
GUGGCGAAGGCGUCUAACUGGAACGAUCUUGACGGUGAGUAACGAAAGCCAGGGGCGCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCCGUAAACGAUGU-GGACUUGGUGUUGGAAU
GGC---------------------------------------------------------
---CUCGA----------------------------------------------------
--------------------GUUGUUCCGGU-GCCGAAGGGAAGCU-GUUAAGUC-----
-------CACC-GCCUGGGAAGUACGG-UCGCAAGAC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-CGCGUGGAGCCUGCGGUUUAAUUGGAUUCAACGCCGGACA-UCUC-
A-CCA-GGA-GC-GA-CAGCA-GAA-UGAUAAU-CAGGUUGAUGA--CCUU-A-UUUGA-
--------------------CUAG-CUGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUA
CU-GUGAAGCGUCCUGUUAAGUCAGGCAACGAGCGAGACCCA-CGCCC-UUAGUUACC-A
ACACAAUC----------------------------------------------------
------------------------------------------------------------
----------------U-CU--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--AUUGG----------
--U-G---------GGCACACUAGGGGGACC-GCCA-G----UGA-UAAAC-UG-GAGGA
AGGAGUGGACGACGGUAGGUCCGU-AUGCCCCGA-AUCUCCUGGGCUACACGCGGGCUAC
AAUG-GCUAUGGCAAUGGGU----------------------------------------
----------------------U-UCUGCACUGAAAAGUGAUGGUAA-UCUC--C-UAAA
CAUAGUCUUAGUUCGGAUUGAGGGCUGUAACUCGCCCUCAUG-AAGCUGGAAUGCGUAGU
AAUCGCAU-GUCACA-ACCGUGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CACACCACCCAAA-AAGGGUUU-GGAUGAGGCCAUA-AUUU-------------------
----U-CA-A------------------------AUGUUA----------UUGUCG-AAU
CUAGGUUUUUUGAGGAGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCUAA----------
>Methanospirillum_hungatei
----------------AUUCUGGUUGAUCCUG-CCAGAGGCCAC--UGCUAUCGGG-GUU
UGACUAAGCCAUGCGAGUCGAGAGGU--------------------------GC---A-A
G-------------------------------A-CCU-CGGCG-UACUGCUCAGUAACAC
GUGGACAAU-CUGCCCUGAAG---------------------AGGAGG-AUAAUCC--C-
G-GGAAA-CUGGGGGUAAUACUCCA-----------------------------------
------------------------------------------------------------
---------UA-GU-UCGUGCUGAC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GUU-AU-GCGAAC-GAAA--GA----------------------U--
C-C-G-------------------UC-GCUUCAGGAUGAGUCUGCG-GCCGAUUA-GGUA
--GUUGUUGGGGUAACGGCCCA-ACAAGCCUGUCAUCGGU-ACGGGUUGUGGGAGCAA-G
AGCCCGGAGAUGGAUUCUGAGACACGAAUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
AACUUUACCAUGCGG-GCA----ACCGUGAUAAGGAAACCCCGAGU--GCCA------GC
----AC-AG----GC-------U-GGCUGUCCACCAGUG----------------UAA-A
U-A-------------------ACUGGUGA-AGAAAGGGCCGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAAUACCGGCGGCUCGAGUGGUGGCCGCUAUUACUGGGCUUAAAGGGUCC
GUAGCUGGAUAUA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCCCUUGAGAAAUCCGCCGGCUUAACC-
--------------------------------GGUG-GGCGUUCAGGGGAAACUGUAU--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------UUCUA--GGGACCGGGA
G-AGGUGAGAGGUA-CUGCCGGGGUAGGAGUGAAAUCCUGUAAUCCCGGUGGGACCACCU
AUGGCGAAGGCAUCUCACCAGAACGGGUCCGACAGUGAGGGACGAAAGCUGGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCCAGCUGUAAACGAUGC-GCGUUAGGUGUGUCAGU
GAC---------------------------------------------------------
---CACGU----------------------------------------------------
--------------------GUCACUGAGGU-GCCGAAGGGAAACC-GUGAAACG-----
-------CGCC-GCCUGGGGAGUACGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-CGGGUGGAGCCUGCGGUUUAAUCGGACUCAACGCCGGAAA-UCUC-
A-CCG-GAU-AA-GA-CAGCU-GCA-UGAUAGU-CGGGAUGAAGA--CUCU-A-CUUGA-
--------------------CUAG-CUGA-GAGGAGGUGCAUGGCCGUCGUCAGUUCGUA
CU-GUGAAGCAUCCUGUUUAGUCAGGCAACGAGCGAGACCCA-CGCGA-GCAGUUGCC-A
GCUUGACC----------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GUUGA----------
--U-G---------GGGACACUGCUCGGACC-GCCU-C----UGC-UAAAG-GG-GAGGA
AGGAAUGGGCAACGGUAGGUCAGC-AUGCCCCGA-AUUAUCCGGGCUACACGCGGGCUAC
AAUG-GACAGGACAAUGGGU----------------------------------------
----------------------U-UCGACACCGAGAGGUGAGGAUAA-UCUC--C-UAAA
CCUGUCCGAAGUUCGGAUUGCGGGUUGUAACUCACCCGCAUG-AAGCUGGAAUCCGUAGU
AAUCGCGU-UUCAAC-AUAGCGCGGUGAAUAUGUCCCUGCUCCUUGCACACACCGCCCGU
CAAACCACCCGAG-UGAGGUCU-UGAUGAGGAUGUA-UC---------------------
----A-GU----------------------------GAUA----------UGUUCG-AAU
CUGGGUUUUGCAAGGGGGGUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Methanothermobacter_thermautotrophicus
-----------------GUCCGUUUGAUCCUG-GCGGAGGCUAC--UGCUAUUGGG-GUU
CGAUUAAGCCAUGCAAGUCGAACGAAC-------------------------CU---U-G
U------------------------------GU-UCG-UGGCG-AACGGCUCAGUAACAC
GUGGAUAAC-CUGCCCUUGGG---------------------ACCGGG-AUAACCC--C-
G-GGAAA-CUGGGGAUAAACCCGGA-----------------------------------
------------------------------------------------------------
---------UA-GG-UGAUGCUGCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GGU-UC-UUCACC-GAAA-CACC---------------------U--
U-C-G------------------GGUG-CCCAAGGAUGGGUCUGCG-GCCGAUUA-GGUU
--GUUGGUAGGGUAACGGCCUA-CCAAGCCGAUCAUCGGU-ACGGGUUGUGAGAGCAA-G
AGCCCGGAGAUGGAACCUGAGACAAGGUUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUCCGCAAUGCAC-GCA----AGUGCGACGGGGGAACCCCAAGU--GCCA------CU
CU--UA-AC--GGGG-------U-GGCUUUUCAGAAGUG----------------UAA-A
A-A-------------------GCUUCUGG-AAUAAGGGCUGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAACACCGGCAGCUCAAGUGGUAGCCGCUUUUAUUGGGCCUAAAGCGUCC
GUAGCCGGUCUGA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCUCUGGUGAAAUCCCACAGCUUAACU-
--------------------------------GUGG-GAAUUGCUGGAGAUACUAUCAU-
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUC--GAGGUCGGGA
G-AGGCUGGAGGUA-CUCCCAGGGUAGGGGUGAAAUCCUGUAAUCCUGGGAGGACCACCU
GUGGCGAAGGCGUCCAGCUGGAACGAACCUGACGGUGAGGGACGAAAGCCAGGGGCGCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCCGUAAACGAUGU-GGACUUGGUGUUGGGAU
GGC---------------------------------------------------------
---UUCGA----------------------------------------------------
--------------------GCUGCCCCAGU-GCCGAAGGGAAGCU-GUUAAGUC-----
-------CACC-GCCUGGGAAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-CGCGUGGAGCCUGCGGUUUAAUUGGAUUCAACGCCGGACA-UCUC-
A-CCA-GGG-GC-GA-CAGCA-GUA-UGAUGGC-CAGGUUGAUGA--CCUU-G-CCUGA-
--------------------CGAG-CUGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUA
CC-GUGAGGCGUCCUGUUAAGUCAGGCAACGAGCGAGACCCA-CGCCC-UUAGUUACC-A
GCGGAACCC---------------------------------------------------
------------------------------------------------------------
----------------U-UA--U-------------------------------------
------------------------------------------------------------
-----------------------------------------GG--GUUGC----------
--C-G---------GGCACACUAAGGGGACC-GCCA-G----UGA-UAAAC-UG-GAGGA
AGGAGUGGACGACGGUAGGUCCGU-AUGCCCCGA-AUCCCCUGGGCAACACGCGGGCUAC
AAUG-GCCUGGACAAUGGGU----------------------------------------
----------------------U-CCGACACCGAAAGGUGGAGGUAA-UCCC--C-UAAA
CCAGGUCGUAGUUCGGAUCGAGGGCUGUAACCCGCCCUCGUG-AAGCUGGAAUGCGUAGU
AAUCGCGU-GUCACU-AUCGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CACGCCACCCAAA-AAGGGCUU-GGAUGAGGCCACA-ACA--------------------
----U-UC---------------------------UGUUG----------UGGUCG-AAU
CUGGGUUCUUUGAGGAGGGCGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCU------------
>Nanoarchaeum_equitans
----------------ACUCCCGUUGAUCCUG-CGGGAGGCCAC--CGCUAUCUCC-GUC
CGGCUAACCCAUGGAAGGCGAGGGUCC-CCG---------------------GG---U-A
-------------------------A-GG--GG-GCC-CGCCG-CACGGCUGAGUAACAC
GUCGGUAAC-CUACCCUCGGG---------------------ACGGGG-AUAACCC--C-
G-GGAAA-CUGGGGCUAAUCCCCGA-----------------------------------
------------------------------------------------------------
---------UA-GG-GGAUGGGUGC-----------------------------------
------------------------------------------------------------
---UG-GA-A-G-GCC-CC-AUCCCC-GAGAGGGGCUA--GCGG-----------UAC--
U-U-CCC----------CCGCUAGCCCGCCCGAGGAUGGGCCGGCG-GCCCAUCA-GGUA
--GUUGGCGGGGUAAUGGCCCG-CCAAGCCGAAGACGGGU-AGGGGCCGUGAGAGCGG-G
AGCCCCCAGAUCGGCACUGAGACAAGGGCCGAGGCCCUACGG-GGCGCACCAGGGGCGAA
ACCUCCGCAAUGCGG-GAA----ACCGUGACGGGGGGACGGAGAGU--GCCG------GA
GGGCGUUAUGCUCUC-------C-GGCUUUUGGGGAGUG----------------UAA-G
U-A-------------------GCUCCCCG-AAUAAGCGGUGGGCAAGAGG-GG-UGGCA
GCCGCCGCGGGAACACCCCCACCGCGAGCGGUGGCCGUGAUUAUUGGGCCUAAAGGGGCC
GUAGCCGGGCCGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UGUGGCUCCGGUGAAAUCCUCGGGCUCAACC-
--------------------------------CGAG-GGCGCGCCGGAGCUACUACCG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GCCUA--GGGACCGGGA
G-GGGCCGACCGUA-CUCCCGGGGGAGCGGUGAAAUGCUGUAAUCCCGGGAGGACGACCC
GUGGCGAAAGCGGUCGGCCAGAACGGGUCCGACGGUGAGGGCCGAAGGCCGGGGGCUAGA
ACGGGAUUAGAGACCCCG-GUAUUCCCGGCUGUCAACGCUGC-GGGCUACCUGCUGGGCG
GGC---------------------------------------------------------
---UACGA----------------------------------------------------
--------------------GCCCGCCCAGU-GGGGUAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUAGGCGG
GGGAGCA-CACAA-GAGGUGGGGUGCGCGGUUUAAUUGGAUUCGACGCCGGGAA-CCUC-
A-CCG-GGG-CU-GA-CAGCA-CAA-UGAUGGU-CGGCCUGAAGG--GCCU-A-CCGGA-
--------------------GGCG-CUGA-GAGGAGGUGCAUGGCCGCCGUCAGCCUGUG
CC-GUGAGGUGCCCUGUUAAGUCAGGAAACAGGCGAGACCCG-CGCCC-GCAGUUGCG-A
CGGCC-------------------------------------------------------
------------------------------------------------------------
----------------G-AA--A-------------------------------------
------------------------------------------------------------
-----------------------------------------------G-G----------
--C-C---------GGCACACUGCGGGGACU-GCCG-G----GGA--AACC-CG-GAGGA
AGGUGCGGGCGACGGCAGGUAUGC-AUGCCCCGA-AUGCCCCGGGCUACACGCGCGCAUC
AAUG-GGCGGGACAGGGGGC----------------------------------------
----------------------C-GCGACCCCGAAAGGGGGAGCAAA-UCCC--C--AAA
CCCGCUCUCAGUCCAGAUCGAGGGCUGCAACUCGCCCUCGUG-ACGGCGGAAUCUCUAGU
AGUCGGAC-GUCACC-AGCGUCCGGCGAAUACGUCCCUGCUCCUUGCACUCACCGCCCGU
CAAGCCACCCGAG-CUGGGGCC-UAGCGAGGCCGUG-GGG----GG--------------
----U-UC-G----------------------CC-CCCCA----------CGGUCG-AGC
UAGGCCCCGGCGAGGGGGGCUAAGUCGACACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCU------------
>Natronomonas_pharaonis
-----------------UUCCGGUUGAUCCUG-CCGGAGGCCAU--UGCUAUCGGU-GUC
CGAUUUAGCCAUGCGAGUUGUACGU---------------------------UU---A--
----------------------------------CCG-UAGCA-AACUGCUCAGUAACAC
GUGGCCAAA-CUGCCCUAUGG---------------------ACCGGA-AUAACCU--C-
G-GGAAA-CUGAGGCUAAUUCCGGA-----------------------------------
------------------------------------------------------------
---------UA-CC-ACAUUCAUCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-UUGGA-GA-AUGUGC-GAAA-UGC----------------------U--
C-C-G-------------------GCG-CCAUAGGAUGUGGCUGCG-GCCGAUUA-GGUA
--GACGGUGGGGUAACGGCCCA-CCGUGCCGAUAAUCGGU-ACGGGUCAUGAGAGUGA-G
AGCCCGGAGACGGACUCUGAGACACGAGUCCGGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUUUACACUGCAC-GAC----AGUGCGAUAGGGGGACACCGAGU--GCGA------GG
GC--AUAGA--GCCC-------U-CGCUUUUCUGAACCG----------------UAA-G
G-A-------------------GGUUCAGG-AACAAGGGCUGGGCAAGACC-GG-UGCCA
GCCGCCGCGGUAACACCGGCAGCCCAAGUGAUGGCCGAUAUUAUUGGGCCUAAAGCGUCC
GUAGCUGGCCGUG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUUCGUCGGGAAAUCCACUCGCUUAACG-
--------------------------------AGUG-GGCGUCCGGCGAAAACUGCUC--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUU--GGGACCGGAA
G-AUCCAAGGGGUA-CGUCCGGGGUAGGAGUGAAAUCCCGUAAUCCUGGACGGACCACCG
AUGGCGAAAGCACCUUGGAAGGACGGAUCCGACAGUGAGGGACGAAAGCUAGGGUCUCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUAGCCGUAAACGAUGC-UCGCUAGGUGUGGCGCA
GGC---------------------------------------------------------
---UACGA----------------------------------------------------
--------------------GCCUGCGCUGU-GCCGUAGGGAAGCC-GUGAAGCG-----
-------AGCC-GCCUGGGAAGUACGU-CUGCAAGGA-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACUACAA-CCGGAGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACA-UCUC-
A-CCA-GCU-CC-GA-CAGCAGUAA-UGACGGU-CAGGUUGAUGA--CCUU-A-CCCGA-
--------------------CGCUGCUGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUA
CC-GUGAGGCGUCCUGUUAAGUCAGGCAACGAGCGAGACCCG-CACCU-CUAGUUGCC-A
GCAGCAUC----------------------------------------------------
------------------------------------------------------------
----------------U-UG--C-------------------------------------
------------------------------------------------------------
------------------------------------------G--AUGGC----------
--U-G---------GGUACACUAGGGGGACU-GCCG-U----CGC-UAAGA-CG-GAGGA
AGGAACGGGCAACGGUAGGUCAGU-AUGCCCCGA-AUGAGCUGGGCUACACGCGGGCUAC
AAUG-GCCAAGACAGUGGGA----------------------------------------
----------------------U-GCGACACCGAGAGGUGAAGCUAA-UCUC--C-UAAA
CUUGGUCGUAGUUCGGAUUGCGGACUGAAACCCGUCCGCAUG-AAGCUGGAUUCGGUAGU
AAUCGCGU-GUCAGA-AGCGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CAAAGCACCCGAG-UGGGGUCC-GGAUGAGGCCUGG------------------------
----C-UA------------------------------CC----------AGGUCG-AAU
CUGGGCUCCGCAAGGGGGCUUAAGUCGUAACAAGGUAGCCGUAGGGGAAUCUGCGGCUGG
AUCACCUCCU------------
>Picrophilus_torridus
-------CAUGGAUUAACUCCGGUUGAUCCUG-CCGGCGGCCAC--UGCUAUCAAG-UUC
CGACUAAGCCAUGCGAGUCAAGGGGCC-------------------------GU---A-A
-------------------------------GG-CAC-CGGCG-UACCGCUCAGUAACAC
GCGGAUAAU-CUACCCUCGGG---------------------AAGGGC-AUAACCU--C-
G-GGAAA-CUGAGGCUAAUUCCCUA-----------------------------------
------------------------------------------------------------
---------UA-GC-CAUUCAGAAC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GUU-UG-GAUGGU-GAAG--GC----------------------U--
C-C-G-------------------GC-GCCCGGGGAUGAGUCUGCG-GCCUAUCA-GGUA
--GUAGGUGGUGUAACGGACCA-CCUAGCCUAAGACGGGU-ACGGGCCCUGGGAGGGG-U
AGCCCGGAGAUGGACUCUGAGACACUAGUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUGUGCAAUGCGC-GCA----AGCGCGACACGGGGAGCUUGAGU--GUCU------UG
GC--AA-AA--GCCA-------A-GACUUUUCUUAUGCC----------------UAA-A
A-A-------------------GCAUAAGG-AAUAAGGGCUGGGUAAGACG-GG-UGCCA
GCCGCCGCGGUAACACCCGCAGCUCAAGUGGUGGUCACUUUUACUGAGCCUAAAGCGUUC
GUAGCCGGCUUUG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAAUCUCCAGGUAAAUUCUAGCGCUUAACG-
--------------------------------UUAG-AUC-UCCUGGAGAGACUGCAA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------AGCUU--GGGACCGGGU
G-GGGUUGAACGUA-CUUUCAGGGUAGGGGUAAAAUCCUGUAAUCCUGGAAGGACGACCG
GUAGCGAAGGCGUUCAACUAGAACGGAUCCGACGGUGAGGAACGAAGGCUAGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCUAGCUGUAAACUCUGC-CCACUUGGUGUUGCCUU
UCC---------------------------------------------------------
---GUUGA----------------------------------------------------
--------------------GGGGAGGCAGU-GCCGGAGCGAAGGU-GUUAAGUG-----
-------GGCC-GCUUGGGGAGUAUGG-UCGCAAGAC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCGCAA-CGGGAGGAAUGUGCGGUUUAAUUGGAUUCAACGCCGGAAA-ACUC-
A-CCG-GGA-GC-GA-CCUGU-GGA-UGAGAGU-CAACCUGACGA--GUUU-A-CUCGA-
--------------------UAGC-AGGA-GAGGUGGUGCAUGGCCGUCGUCAGCUCGUA
CC-GUAGGGCGUUCACUUAAGUGUGAUAACGAGCGAGACCCC-CAUCU-CCAAUUGCA-A
UUACCUAC----------------------------------------------------
------------------------------------------------------------
----------------G-CG--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--UAG-G----------
--U-A---------AGCACUUUGGAGAGACC-GCCA-G----CGC-UAAGC-UG-GAGGA
AGGAGGGGUCGACGGCAGGUCAGU-ACGCCCCGA-AUCUCCCGGGCUACACGCGCAUUAC
AAAG-GGCAGGACAAUGCGU----------------------------------------
----------------------U-GCAACCUCGAAAGGGGAAGCUAA-UCGC--C--AAA
CCUGUCCGUAGUUAGGAUUGAGGGCUGUAACUCGCCCUCAUG-AAUCUGGAUUCCGUAGU
AAUCGCGG-GUCAAC-AACCCGCGGUGAAUAUGCCCCUGCUCCUUGCACACACCGCCUGU
CAAACCAUCCGAG-CUGGUGUU-GGAUGAGGGUUAG-CUC--------------------
----G-AG-A-------------------------GGGUU----------AGCUCA-AAU
CUGAUGUCAGUGAGGAGGGUUAAGUCAUAACAAGGUAUCUGUAGGGGAACCUGCAGAUG-
----------------------
>Pyrobaculum_calidifontis
-------------------CCGGUUGAUCCUG-CCGGACCCGAC--CGCUAUCGGG-GUA
GGGCUAAGCCAUGCGAGUCGCGCGCCC-GGG---------------------GG---C-G
-------------------------C-CC--GG-GAG-CGGCG-CACGGCUCAGUAACAC
GUGCCUAAC-CUAACCUCGGG---------------------AGGGGG-ACACCCC--C-
G-GGAAA-CUGGGGUCAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-GGAAGGGCGC-----------------------------------
------------------------------------------------------------
---UG-GA-A-G-GCC-CC-UUCCCC-GAAAGGGCUGG--CGGC------------CG--
A-U-CCG-----------CCGCCAGUCGCCCGAGGGUGGGGGCACG-GCCCAUCA-GGUA
--GUUGGCGGGUUAAAGGCCCG-CCAAGCCGAAGACGGGU-AGGGGCGGUGAGAGCCGCG
AGCCCCGAGAUGGGCACUGAGACAAGGGCCCAGGCCCUACGG-GGUGCAGCAGGCGCGAA
UACUCCGCAAUGCGG-GCA----ACCGCGACGGGGCUACCCCGAGU--GCCG------GG
CG--AA--G--AGCC-------C-GGCUUUUGCCCGGUC----------------UAA-A
A-A-------------------GCCGGGAG-AAUAAGCGGGGGGCAAGUCU-GG-UGUCA
GCCGCCGCGGUAAUACCAGCUCCGCGAGUGGUCGGGGUGUUUACUGGGCUUAAAGCGCCC
GUAGCCGGCCCGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCGCUCCUGAAAUCCCCGGGCUCAACC-
--------------------------------CGGG-GGC-CGGGGGCGAUACUGCCG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GGGGGCGGGA
G-AGGCCGCCGGUA-CUCCGGGGGUAGGGGCGAAAUCCGUUAAUCCCCGGAGGACCACCA
GUGGCGAAAGCGGGCGGCCAGAACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGGAGCAA
AGGGGAUUAGAUACCCCU-GUAGUCCCGGCCGUAAACGAUGC-GGGCUAGCUGUCGGUCG
GGC---------------------------------------------------------
---UUAGG----------------------------------------------------
--------------------GCCCGGCCGGU-GGCGAAGGGAAACC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGGGCACCACAA-GGGGUGAAGCUUGCGGCUUAAUUGGAGUCAACGCCGGAAA-CCUC-
A-CCC-GGG-GC-GA-CAGCA-GGA-UGAAGGC-CAGGCUAACGA--CCUU-G-CCGGA-
--------------------CGAG-CUGA-GAGGAGGUGCAUGGCCGUCGUCAGCUCGUG
CC-GUGAGGUGUCCGGUUAAGUCCGGCAACGAGCGAGACCCC-CGCCC-CUAGUUGCU-A
CCCCUCCC----------------------------------------------------
------------------------------------------------------------
----------------U-AC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GGAGG----------
--G-G---------GGCACACUAGGGGGACU-GCCG-G----CG--UAAGC-CG-GAGGA
AGGAGGGGGCCACGGCAGGUCAGU-AUGCCCCGA-AACCCCGGGGCUGCACGCGAGCUGC
AAUG-GCGGGGACAGCGGGA----------------------------------------
----------------------U-CCGACCCCGAAAGGGGGAGGCAA-UCCC--G-UAAA
CCCCGCCCCAGUAGGGAUCGAGGGCUGCAACUCGCCCUCGUG-AACGUGGAAUCCCUAGU
AACCGCGU-GUCACC-AACGCGCGGUGAAUACGUCCCUGCCCCUUGCACACACCGCCCGU
CGCACCACCCGAG-GGAGCCCU-CUGCGAGGCCCCU-CGCC-------------------
----G-CA-A------------------------GGUGGG----------GGGACG-AGC
AGGGGGCUCCCAAGGGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCC-------------
>Pyrococcus_furiosus
----------------AUUCCGGUUGAUCCUG-CCGGAGGCCAC--UGCUAUGGGG-GUC
CGACUAAGCCAUGCGAGUCAAGGGGGC-GUC------------C-C------UU---C-U
-------G-G---------------G-AC--GC-CAC-CGGCG-GACGGCUCAGUAACAC
GUCGGUAAC-CUACCCUCGGG---------------------AGGGGG-AUAACCC--C-
G-GGAAA-CUGGGGCUAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-CCUGGGGUAC-----------------------------------
------------------------------------------------------------
---UG-GA-A-G-GUC-CC-CAGGCC-GAAAGGGAGCC-------------------G--
U-A-A----------------GGC-CCGCCCGAGGAUGCGGCGGCG-GCCGAUUA-GGUA
--GUUGGUGGGGUAACGGCCCA-CCAAGCCGAAGAUCGGU-ACGGGCCGUGAGAGCGG-G
AGCCCGGAGAUGGACACUGAGACACGGGUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUCCGCAAUGCGG-GAA----ACCGCGACGGGGGGACCCCCAGU--GCCG------UG
CC--UC--U--GGCA-------C-GGCUUUUCCGGAGUG----------------UAA-A
A-A-------------------GCUCCGGG-AAUAAGGGCUGGGCAAGGCC-GG-UGGCA
GCCGCCGCGGUAAUACCGGCGGCCCGAGUGGUGGCCACUAUUAUUGGGCCUAAAGCGGCC
GUAGCCGGGCCCG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCCCUGGCGAAAUCCCACGGCUCAACC-
--------------------------------GUGG-GGCUCGCUGGGGAUACUGCGG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GCCUU--GGGACCGGGA
G-AGGCCGGGGGUA-CCCCCGGGGUAGGGGUGAAAUCCUAUAAUCCCGGGGGGACCGCCA
GUGGCGAAGGCGCCCGGCUGGAACGGGUCCGACGGUGAGCGCGGAAGGCCAGGGGAGCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCUGUAAAGGAUGC-GGGCUAGGUGUCGGGCG
AGC---------------------------------------------------------
---UUCGA----------------------------------------------------
--------------------GCUCGCCCGGU-GCCGUAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACUACAA-GGGGUGGAGCGUGCGGUUUAAUUGGAUUCAACGCCGGGAA-CCUC-
A-CCG-GGG-GC-GA-CGGCA-GGA-UGAAGGC-CAGGCUGAAGG--UCUU-G-CCGGA-
--------------------CGCG-CCGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUA
CC-GUGAGGCGUCCACUUAAGUGUGGUAACGAGCGAGACCCG-CGCCC-CCAGUUGCC-A
GUCCCUCCC---------------------------------------------------
------------------------------------------------------------
----------------G-CU--C-------------------------------------
------------------------------------------------------------
-----------------------------------------GG--GA--G----------
--G-A---------GGCACUCUGGGGGGACU-GCCG-G----CGA-UAAGC-CG-GAGGA
AGGGGCGGGCGACGGUAGGUCAGU-AUGCCCCGA-AACCCCCGGGCUACACGCGCGCUAC
AAUG-GGCGGGACAAUGGGA----------------------------------------
----------------------C-CCGACCUCGAAAGGGGAAGGGAA-UCCC--C-UAAA
CCCGCCCUCAGUUCGGAUCGCGGGCUGCAACUCGCCCGCGUG-AAGCUGGAAUCCCUAGU
ACCCGCGU-GUCAUC-AUCGCGCGGCGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CACUCCACCCGAG-CGGAGUCC-GGGUGAGGCCUGA-UCUCC------------------
----U-UC-G-----------------------GGAGGUC----------AGGUCG-AGC
CCGGGCUCCGUGAGGGGGGAGAAGUCGUAACAAGGUAACCGUAGGGGAACCUACGGCUCG
AUCACCUCCU------------
>Staphylothermus_marinus
----------------ACUCCGGUUGAUCCUG-CCGGACCCGAC--CGCUAUCGGG-GUG
GGGCUAAGCCAUGGGAGUCGUACGCUC-CGC---------------------CG---C-U
-------------------------G-CG--GA-GCG-UGGCG-GACGGCUGAGUAACAC
GUGGCUAAC-CUACCCUCGGG---------------------AGGGGG-AUAACAC--C-
G-GGAAA-CUGGUGCUAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-GGAGGAUGCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-G-GGU-UC-CUCCCC-GAAAGGGUGCG--GUGG-----------GGG--
U-UAUCG----------CCGCCGCGCCGCCCGAGGAUGGGGCUGCG-GCCCAUCA-GGUA
--GUUGGCGGGGUAACGGCCCG-CCAAGCCGAUAACGGGU-AGGGGCCGUGAGAGCGG-G
AGCCCCCAGAUGGGCACUGAGACAAGGGCCCAGGC-CUACGG-GGUGCACCAGGCGCGAA
ACCUCCGCAAUGCGG-GCA----ACCGUGACGGGGUCACCCCGAGU--GCCC------CC
----UAUAU----GG-------G-GGCUUUUCCCCGCUG----------------UAG-G
A-A-------------------GGCGGGGG-AAUAAGCGGGGGGCAAGUCU-GG-UGUCA
GCCGCCGCGGUAAUACCAGCCCCGCGAGUGGUCGGGACGAUUAUUGGGCCUAAAGCGCCC
GUAGCCGGCCUGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCCCCUCCUAAAUCCCCGGGCUCAACC-
--------------------------------CGGG-GAG-UGGAGGGGAAACUGCCA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GGGGGCGGGA
G-AGGCCGAGGGUA-CUCCCGGGGUAGGGGCGAAAUCCUAUAAUCCCGGGAGGACCACCA
GUGGCGAAGGCGCUCGGCUGGAACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGGAGCGA
ACCGGAUUAGAUACCCGG-GUAGUCCCGGCUGUAAACGAUGC-GGGCUAGGUGUUGGGCG
GGC---------------------------------------------------------
---UUAGA----------------------------------------------------
--------------------GCCCGCCCAGU-GCCGCAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-GGGGUGGAGCCUGCGGUUUAAUUGGAGUCAACGCCGGGAA-CCUC-
A-CCG-GGG-GC-GA-CAGCA-GGA-UGACGGC-CAGGCUAACGG--CCUU-G-CCCGA-
--------------------CGCG-CUGA-GAGGAGGUGCAUGGCCGUCGCCAGCUCGUG
CC-GUGAGGUGUCCGGUUAAGUCCGGCAACGAGCGAGACCCC-CGCCC-CUAGUUGCG-A
CCCGGAGC----------------------------------------------------
------------------------------------------------------------
----------------U-CU--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--CUC-C----------
--G-G---------GGCACACUAGGGGGACU-GCCG-C----CGUAUAAGG-CG-GAGGA
AGGAGGGGGCCACGGCAGGUCAGC-AUGCCCCGA-AUCCCCCGGGCUACACGCGGGCUAC
AAUG-GCGGGGACAGCGGGA----------------------------------------
----------------------U-CCGACCCCGUAAGGGGGAGGCAA-UCCC--U-CAAA
CCCCGCCGCAGUUGGGAUCGAGGGCUGCAACUCGCCCUCGUG-AACGUGGAAUCCCUAGU
AACCGCGC-GUCAUC-AUCGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CGCUCCACCCGAG-GGAGGGGGUGAGUGAGGCCCGG-UCCCCCGGG--------------
----N-AA-A-------------------CCCGGGGGNCG----------GGGUCG-AAC
UCUCCCCUCCCAAGGGGGGAGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUCCC------------
>Sulfolobus_acidocaldarius
----------------AUUCCGGUUGAUCCUG-CCGGACCCGAC--CGCUAUCGGG-GUA
GGGAUAAGCCAUGGGAGUCUUACACUC-CCG---------------------GG---U-A
-------------------------A-GG--GA-GUG-UGGCG-GACGGCUGAGUAACAC
GUGGCUAAC-CUACCCUCGGG---------------------ACGGGG-AUAACCC--C-
G-GGAAA-CUGGGGAUAAUCCCCGA-----------------------------------
------------------------------------------------------------
---------UA-GG-GAAGGAGUCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GGU-UC-CUUCCC-UAAAGGGCUAU--AGGC-----------UAU--
U-U-CCC----------GUUUGUAGCCGCCCGAGGAUGGGGCUACG-GCCCAUCA-GGCU
--GUCGGUGGGGUAAAGGCCCA-CCGAACCUAUAACGGGU-AGGGGCCGUGGAAGCGG-G
AGCCUCCAGUUGGGCACUGAGACAAGGGCCCAGGCCCUACGG-GGCGCACCAGGCGCGAA
ACGUCCCCAAUGCGC-GAA----AGCGUGAGGGCGCUACCCCGAGU--GCCU------CC
----GC-AA----GG-------A-GGCUUUUCCCCGCUC----------------UAA-A
A-A-------------------GGCGGGGG-AAUAAGCGGGGGGCAAGUCU-GG-UGUCA
GCCGCCGCGGUAAUACCAGCUCCGCGAGUGGUCGGGGUGAUUACUGGGCCUAAAGCGCCU
GUAGCCGGCCCAC-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------CAAGUCGCCCCUUAAAGUCCCCGGCUCAACC-
--------------------------------GGGG-AAC-UGGGGGCGAUACUGGUG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GGGGGCGGGA
G-AGGCGGGGGGUA-CUCCCGGAGUAGGGGCGAAAUCCUUAGAUACCGGGAGGACCACCA
GUGGCGGAAGCGCCCCGCUAGAACGCGCCCGACGGUGAGAGGCGAAAGCCGGGGCAGCAA
ACGGGAUUAGAUACCCCG-GUAGUCCCGGCUGUAAACGAUGC-GGGCUAGGUGUCGAGUA
GGC---------------------------------------------------------
---UUAGA----------------------------------------------------
--------------------GCCUACUCGGU-GCCGCAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-UCGCAAGAC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-GGGGUGGAACCUGCGGCUCAAUUGGAGUCAACGCCUGGAA-UCUU-
A-CCG-GGG-GA-GA-CCGCA-GUA-UGACGGC-CAGGCUAACGA--CCUU-G-CCUGA-
--------------------CUCG-CGGA-GAGGAGGUGCAUGGCCGUCGCCAGCUCGUG
UU-GUGAAAUGUCCGGUUAAGUCCGGCAACGAGCGAGACCCC-CACCC-CUAGUUGGU-A
UUCUGGAC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--UCC-A----------
--G-A---------ACCACACUAGGGGGACU-GCCG-G----CG--UAAGC-CG-GAGGA
AGGAGGGGGCCACGGCAGGUCAGC-AUGCCCCGA-AACUCCCGGGCCGCACGCGGGUUAC
AAUG-GCAGGGACAACGGGA----------------------------------------
----------------------U-GCUACCUCGAAAGGGGGAGCCAA-UCCU----UAAA
CCCUGCCGCAGUUGGGAUCGAGGGCUGAAACCCGCCCUCGUG-AACGAGGAAUCCCUAGU
AACCGCGG-GUCAAC-AACCCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CGCUCCACCCGAG-CGAGAAAG-GGGUGAGGUCCCU-UGCG-------------------
----A-U--A------------------------AGUGGG----------GGAUCG-AAC
UCCUUUCCCGCGAGGGGGGAGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCAC-----------------
>Sulfolobus_tokodaii
----------------AUUCCGGUUGAUCCUG-CCGGACCCGAC--CGCUAUCGGG-GUA
GCACUAAGCCAUGGGAGUCGUACACCC-CCG---------------------GG---C-A
-------------------------A-GG--GG-GUG-UGGCG-GACGGCUGAGUAACAC
GUGGCUAAC-CUACCCUCGGG---------------------AGGGGG-AUAACCC--C-
G-GGAAA-CUGGGGAUAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-GGAGGAGUCC-----------------------------------
------------------------------------------------------------
---UG-GA-A-C-GGU-UC-CUCCCU-UAAAAGGGUAU--GGGC-----------UAU--
U-U-CCC----------GCUCAUACCCGCCCGAGGAUGGGGCUGCG-GCCCAUCA-GGCU
--GUUGGCGGGGUAACGGCCCG-CCAAACCUAUAACGGGU-AGGGGCCGUGGGAGCGG-G
AGCCCCCAGUUGGGCACUGAGACAAGGGCCCAGGCCCUACGG-GGCGCACCAGGCGGGAA
ACGUCCCCAAUGCGC-GAA----AGCGUGAGGGCGCUACCCCGAGU--GCCC------CC
----GU-AA----GG-------G-GGCUUUUCCCCGCUC----------------UAC-A
A-A-------------------GGCGGGGG-AAUAAGCGGGGGGCAAGUCU-GG-UGUCA
GCCGCCGCGGUAACACCAGCUCCGCGAGUGGUCGGGACGCUUACUGGGCCUAAAGCGCCU
GUAGCCGGCCCAC-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCGCCCCUUAAAGACCCGGGCUCAACC-
--------------------------------CGGG-AAA-UGGGGGCGAUACUGGUG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GGGGGCGGGA
G-AGGCUAGGGGUA-CUCCCAGAGGAGGGGCGAAAUCCGUAGAUCCUGGGAGGACCACCA
GUGGCGGAGGCGCCUAGCUAGAACGCGCCCGACGGUGAGAGGCGAAAGCCGGGGCAGCAA
AUGGGAUUAGAUACCCCA-GUAGUCCCGGCUGUAAACGAUGC-GGGCUAGGUGUCAGGUG
GGC---------------------------------------------------------
---UUAGA----------------------------------------------------
--------------------GCUCACCUGGU-GCCGCAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-UCGCAAGAC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-GGGGUGGAACCUGCGGCUCAAUUGGAGUCAACGCCUGGAA-UCUU-
A-CCG-GGG-GA-GA-CCGCA-GGA-UGACGGC-CAGGCUAACGA--CCUU-G-CCUGA-
--------------------CUCG-CGGA-GAGGAGGUGCAUGGCCGUCGCCAGCUCGUG
UU-GUGAAAUGUCCUGUUAAGUCAGGCAACGAGCGAGACCCC-CACCC-CUAGUUGGU-A
UCCCCAUC----------------------------------------------------
------------------------------------------------------------
----------------U-CC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--AUG-G----------
--G-G---------GCCACACUAGGGGGACU-GCCG-C----CG--UAAGG-CG-GAGGA
AGGAGGGGGCCACGGCAGGUCAGC-AUGCCCCGA-AACCCCCGGGCCGCACGCGGGUUAC
AAUG-GCAGGGACAGCGGGA----------------------------------------
----------------------UUGCGACCCCGAAAGGGGGAGCCAA-UCCC--C-CAAA
CCCUGCCGCAGUUGGGAUCGAGGGCUGAAACCCGCCCUCGUG-AACGAGGAAUCCCUAGU
AACCGCGG-GUCAAC-AACCCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CGCUCCACCCGAG-AGAGGAAG-GGGUGAGGUCCCC-UGCG-------------------
----A-U--G------------------------AGUGGG----------GGAUCG-AAC
UCCUUCCUCUCGAGGGGGGAGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGG
AUCACCUC--------------
>Thermococcus_kodakarensis
----------------AUUCCGGUUGAUCCUG-CCGGAGGCCAC--UGCUAUGGGG-GUC
CGACUAAGCCAUGCGAGUCAUGGGGCG-CGC---------------------UC---U-G
---------------------------CG--CG-CAC-CGGCG-GACGGCUCAGUAACAC
GUCGGUAAC-CUACCCUCGGG---------------------AGGGGG-AUAACCC--C-
G-GGAAA-CUGGGGCUAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-CCUGAGGUAC-----------------------------------
------------------------------------------------------------
---UG-GA-A-G-GUC-CU-CAGGCC-GAAAGGGGC---------------------A--
U-C-U------------------GCCCGCCCGAGGAUGGGCCGGCG-GCCGAUUA-GGUA
--GUUGGUGGGGUAACGGCCCA-CCAAGCCGAAGAUCGGU-ACGGGCCAUGAGAGUGG-G
AGCCCGGAGAUGGACACUGAGACACGGGUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
ACCUCCGCAAUGCGG-GCA----ACCGCGACGGGGGGACCCCCAGU--GCCG------UG
GC--AU--A--GCCA-------C-GGCUUUUCCGGAGUG----------------UAA-A
A-A-------------------GCUCCGGG-AAUAAGGGCUGGGCAAGGCC-GG-UGGCA
GCCGCCGCGGUAAUACCGGCGGCCCGAGUGGUGGCCGCUAUUAUUGGGCCUAAAGCGUCC
GUAGCCGGGCCCG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCCCUGGCGAAAUCCCACGGCUCAACC-
--------------------------------GUGG-GGCUUGCUGGGGAUACUGCGG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GCCUU--GGGACCGGGA
G-AGGCCGGGGGUA-CCCCUGGGGUAGGGGUGAAAUCCUAUAAUCCCAGGGGGACCGCCA
GUGGCGAAGGCGCCCGGCUGGAACGGGUCCGACGGUGAGGGACGAAGGCCAGGGGAGCGA
ACCGGAUUAGAUACCCGG-GUAGUCCUGGCUGUAAAGGAUGC-GGGCUAGGUGUCGGGCG
AGC---------------------------------------------------------
---UUCGA----------------------------------------------------
--------------------GCUCGCCCGGU-GCCGGAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACUACAA-GGGGUGGAGCGUGCGGUUUAAUUGGAUUCAACGCCGGGAA-CCUC-
A-CCG-GGG-GC-GA-CGGCA-GGA-UGAAGGC-CAGGCUGAAGG--UCUU-G-CCGGA-
--------------------CACG-CCGA-GAGGAGGUGCAUGGCCGCCGUCAGCUCGUA
CC-GUGAGGCGUCCACUUAAGUGUGGUAACGAGCGAGACCCG-CGCCC-CCAGUUGCC-A
GUCCUCCCC---------------------------------------------------
------------------------------------------------------------
----------------G-CU----------------------------------------
------------------------------------------------------------
-----------------------------------------GG--GGA-G----------
--G-A---------GGCACUCUGGGGGGACC-GCCG-G----CGA-UAAGC-CG-GAGGA
AGGAGCGGGCGACGGUAGGUCAGU-AUGCCCCGA-AACCCCCGGGCUACACGCGCGCUAC
AAUG-GGCGGGACAAUGGGA----------------------------------------
----------------------U-CCGACCCCGAAAGGGGAAGGGAA-UCCC--C-UAAA
CCCGCCCUCAGUUCGGAUCGCGGGCUGCAACUCGCCCGCGUG-AAGCUGGAAUCCCUAGU
ACCCGCGU-GUCAUC-AUCGCGCGGCGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CACUCCACCCGAG-CGGGGUCC-GGGUGAGGCCUGG-UCUCC---C--------------
----U-UC-G----------------------GGGAGGCC----------GGGUCG-AGC
CUGGGCUCCGUGAGGGGGGAGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUACGGCUCG
AUCACCUCCUAUCGCCGGA---
>Thermofilum_pendens
------------------UCCGGUUGAUCCUG-CCGGACCCGAC--CGCUAUCGGG-GUG
GGGCUAACCCAUGGAAGUCUAGGAGCC-GGG---------------------GC---U-A
--C----G-G-----------------CC--GG-CUC-CGGCG-GACGGCUCAGUAGCAC
GUGGCUAAC-CUACCCUCGGG---------------------AGGGGG-AUAACCC--C-
G-GGAAA-CUGGGGAUAAACCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GG-CGCGGACACC-----------------------------------
------------------------------------------------------------
---UG-GA-A-U-GGG-UC-CGCGCU-GAAAGGGCCAC--GGUA------------CC--
A-U-GCU----------UACCGUGGCCGCCCGAGGAUGGGGCUGCG-CCCUAUCA-GGUA
--GUUGGCGGGGUAACGGCCCG-CCAAGCCGAUAACGGGU-GGGGGCCGUGAGAGCGG-G
AGCCCCGAGAUGGGCACUGAGACAAGGGCCCAGGCCCUACGG-GGUGCACCAGGGGCGAA
ACUUCCGCAAUGCGG-GAA----ACCGUGACGGAGUCACCCCGAGU--GCCA------CC
CG--AA--G--AGGG-------U-GGCUUUUGCCCGGUC----------------UAA-A
A-A-------------------GCCGGGCG-AAUAAGCGGGGGGCAAGCUU-GG-UGUCA
GCCGCCGCGGUAAUACCAACCCCGCGAGUGGUCGGGACGUUUAUUGGGCCUAAAGCGUCC
GUAGCCGGCCCGG-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAGUCCCUCCUUAAAGCCCACGGCUCAACC-
--------------------------------GUGG-GA-GC-GGAGGGAUACUGCCG--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GGCUA--GGGGGCGGGA
G-AGGCCGGGGGUA-CUCCUGGGGUAGGGGCGAAAUCCUAUAAUCCCAGGAGGACCACCA
GUGGCGAAGGCGCCCGGCUAGCACGCGCCCGACGGUGAGGGACGAAAGCUGGGGGAGCAA
AGGGGAUUAGAUACCCCC-GUAGUCCCAGCUGUAAACGAUGC-GGGCUAGGUGUUGGACG
GGC---------------------------------------------------------
---UUCGA----------------------------------------------------
--------------------GCCCGUCCAGU-GCCGUAGGGAAGCC-GUUAAGCC-----
-------CGCC-GCCUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCACAA-GGGGUGAAGCUUGCGGUUUAAUUGGAGUCAACGCCGGAAA-CCUU-
A-CCG-GGG-GC-GA-CAGCA-GGA-UGAAGGC-CAGGCUGACGA--CCUU-G-CCAGA-
--------------------CGAG-CUGA-GAGGAGGUGCAUGGCCGUCGCCGGCUCGUG
CC-GUGAGGUGUCCUGUUAAGUCAGGGAACGAGCGAGACCCC-CGCCC-CUAGUUGCU-A
CCCAGCCC----------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
------------------------------------------G--GGC-U----------
--G-G---------GGCACUCUAGGGGGACU-GCCG-G----CGA-UAAGC-CG-GAGGA
AGGUGGGGGCUACGGCAGGUCAGU-AUGCCCCGA-AACCCCCGGGCUACACGCGAGCUGC
AAUG-GCGGGGACAGCGGGU----------------------------------------
----------------------U-CCGACCCCGAAAGGGGGAGGUAA-UCCC--U-UAAA
CCCCGCCUCAGUAGGAAUCGAGGGCUGCAACUCGCCCUCGUG-AACGUGGAAUCCCUAGU
AACCGCGU-GUCACC-AACGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGU
CGCUCCACCCGAG-GGAGGCCU-AGGUGAGGCCUCC-UGCC-------------------
----GACG-A-------------------------GGUGG----------GAGGUCGAAC
CUGGGCCUCCCAAGGGGGGAGAAGUCGUAACAAGGUGGCCGUAGGGGAACCUGCGGCCGG
AUCACCUCCUUU----------
>Thermoplasma_volcanium
-------------UUAACUCCGGUCGAUCCUG-CCGGCGGUCAC--UGCUAUCAGG-UUC
CGACUAAGCCAUGCAAGUCACGGGGCC-------------------------GU---A-A
-------------------------------GG-CAC-CGGCG-AACAGCUCAGUAACAC
GUGGAUAAU-UUACCCUCAGG---------------------UGGGGU-AUAACCU--C-
G-GGAAA-CUGAGGCUAAUCCCCCA-----------------------------------
------------------------------------------------------------
---------UA-GU-CAUUACAAAC-----------------------------------
------------------------------------------------------------
---UG-GA-A-C-GUU-GU-AAUGAU-GAAA--GC----------------------U--
C-C--G------------------GC-GCCUGAGGAUAAGUCUGCG-GCCUAUCA-GGUA
--GUAGGUGGUGUAAAGGACCA-CCUAGCCUAAGACGGGU-ACGGGCCCUGAAAGGGG-G
AGCCCGGAGAUGGACUCUGAGACAACAGUCCAGGCCCUACGG-GGCGCAGCAGGCGCGAA
AACUGUGCAAUGCGC-GAA----AGCGCGACACGGGGAACCUGAGU--GCCU------UG
AC--UUUUC--GUCA-------A-GGCUUUUCUGAUGCC----------------UAA-A
A-A-------------------GCAUCAGG-AAUAAGGGCUGGGCAAGACG-GG-UGCCA
GCCGCCGCGGUAACACCCGCAGCUCGAGUGGUGAUCACUUUUAUUGAGUCUAAAGCGUCC
GUAACCGGUCUUA-----------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
----------------------------UAAAUCUUCAGAUAAAUUCUCCCGCUUAACG-
--------------------------------GAAG-AACUU-CUGAAGAGACUGUAA--
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------------------GACUU--GGGACCGGGU
G-AGGUUGAAUGUA-CUUUCAGGGUAGGGGUAAAAUCCUGUAAUCCUGAAAGGACGACCG
GUGGCGAAAGCGUUCAACUAGAACGGAUCCGACGGUGAGGGACGAAGGCUAGGGGAGCAA
ACCGGAUUAGAUACCCGG-GUAGUCCUAGCUGUAAACGCUGC-CCACUUGGUGUUGCUUC
UCC---------------------------------------------------------
---GUUGA----------------------------------------------------
--------------------GGGGGAGCAGU-GCCGUAGCGAAGGU-GUUAAGUG-----
-------GGUC-ACUUGGGGAGUACGG-CCGCAAGGC-UGAAACUUAAAGGAAUUGGCGG
GGGAGCACCGCAA-CGGGAGGAGCGUGCGGUUUAAUUGGAUUCAACGCCGGAAA-ACUC-
A-CCG-GGA-GC-GA-CCUUC-GGA-UGAGGGU-CAACCUGACGA--AUUU-A-CCCGA-
--------------------UAGA-AGGA-GAGGUGGUGCAUGGCCGUCGUCAGCUCGUA
CC-GUAGGGCGUUCACUUAAGUGUGAUAACGAGCAAGACCCC-CAUCU-CUAAUUGCU-A
AGCUUUCU----------------------------------------------------
------------------------------------------------------------
----------------U-AG--C-------------------------------------
------------------------------------------------------------
------------------------------------------G--GGA-A----------
--G-C---------UGCACUUUAGAGGGACC-GCCA-G----CGC-UAAGC-UG-GAGGA
AGGAGGGGUCGACGGCAGGUCAGU-ACGCCCCGA-AUCUCCCGGGCUACACGCGCGCUAC
AAAG-GACGGGACAAUGAGU----------------------------------------
----------------------U-GCAACCUCGAAAGGGGAAGCUAA-CCUC--G--AAA
CCCGUUCGUAGUCAGGACUGAGGGCUGUAACUCGCCCUCACG-AAUGUGGAUUCCGUAGU
AAUCGUAG-GUCAAC-AGCCUACGGUGAAUAUGCCCCUGCUCCUUGCACACACCGCCCGU
CAAACCAUCCGAG-CUGGUGUU-GGAUGAGGGUCUG-UCC--------------------
----A-UU----------------------------GGAU----------GGAUUCGAAU
CUGAUGUCAGUGAGGAGGGUUAAGUCGUAACAAGGUAUCCGUAGGGGAACCUGCGGAUGG
AUCACCUCCA------------
>Adineta_vaga
-----------------------UUGAUCUUG-UCGGUGG-CUU-UCCUUUGUCUU-G-A
AGAUUAAGCCAUGCAUGUCUAAGUAUGAACUGGU------------------UU---A-A
-------------------------G-GU--GA-AAC-U-GCG-UACGGCUCAUUACAUC
AGCUAUAACUUUCUUUGAUC-AUAAAUUCU-----------AAAUGGA-AUAACCG--A-
G-GAAAAGCCUGGGCUAAUACAUGCGA------------CA---------------A---
--------------------UUC-----------------CGGU---AGU--------AA
UAUCGGAAU---GCUUUUAUUAGAUC---AAAAC-C------------------------
------------------UUCUAG--UUCUUUAACCGG-----------AACUG-UUUGU
U-GGU-GA-CUCUAAAUAACUUUGUGUUGA--UCGUAUG-AC---------------C-U
UUG-U--------------GUCGACGACAUAUCUUUCAAGUGUCUG-ACUUAUCA-ACUU
UAGACGGUACAUUAUAUGUCUA-CCGUGGUUGUAACGAGU-ACAGAGAAUCAGGGUUU-G
GUUCUGGAGAGGCCGCCUGAGAAACGGCGACCACUUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCACUCUCA--AA----ACGAGGAGGUAGUGAAGAGAAAUAACGAUGUUAG-UC
UU--AU-UU---AGG-CU-GACAAUCGGAAUGGGAACACUG--------------UAA-A
C-A-----------------GGUUAUCGAUUAACAAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAAGGAAAACUAAAGUUGCUGUGUUUAAAAAGCUC
GUAGUUGAAUUUCGGGUAUU-UGUU-G-C-UAG-CUGGUC--------------------
---------------------------------UAACUG----GCCAUGUUGGUUAACAG
AUCCUCAUU---------------UGCUGGACG-----GCU-------------------
------------------------------------------------------------
--------------------------GGCGA-UGAUC-UUUAUC-GAUU--GUCGUCA--
-----GU----------UGCCAG-AACG-UUUACUUUGAGAAAAUUAGAGUGCUAAAAGC
AGGC---------UUUC------G-C--C---UAUA-UAU-AUUGCAUGGAAUAAUGAAA
UAAGA----------UC-U--CGAUUUU--A-UU-UC-GUU-GGUU-----UUAGAA-AU
--U-GAG-AUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAU-AGGAUCAGAG
G-GGGGCGUACGUA-CUGUGGUGUGAGAGGUGAAAUUCUUGGAUCGCCACAGGACGAACA
GCAGCGAAGGCGUUCGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUUUGAGGUUCGA
AGACGAUUAGAUACCGUC-CUAGUUCAAACCAUAAACGUUGC-CAACUGUCUUUUAGAUG
CGGUU-------------------------------------------------------
-AUUUAUAU---------------------------------------------------
-------------------GACUCAUCUGGCGGAUCUCGAGAAAUC-U--AAGUU-----
---UUUAGGUU-CCGGGGGAAGUAUGG-UUGCAAAGC-UGAAACUUAAAAGAAUUGACGG
AAGGACA-CACAA-GAAGUGGAGCCUGUGGCCUAAUUUGACUCAACACGGGAAA-CCUU-
A-CUC-GGC-CA-GGACACUU-UUA-GGAUUGA-CAGAUUGAGAGC-UCUU-U-CUUGA-
--------------------UUAG-GUGG-GUGGUGGUGCAUGGUCGUUCGUAGUUCGUG
GA-GCGAUUUGUCUGAUUAAUUUCGAUAACGAACGAGACUCC-GGCUUACUAAAUAGU-C
UAAAG-------------------------------------------------------
------------------------------------------------------------
------------------UU----------------------------------------
------------------------------------------------------------
--------------------------------------CGAAGGG-AC-UU---------
--U-U------CAAGACUUCUUAGCAGGAUA-AGUG-GCACUUUU-UAAGC-CA-CACGA
A--AUGGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGAGGCUGCACGCGCGCUAC
ACUG-GAGAGUUCAGAAUGU-------------------------------UUC------
----------------------UUCCUACUUCGACAGAAGUGGGUAA-CCAU--GAAAUU
CUC-UUCGUGACUGGGAUCGGAGCUUGCAAUUAUUCUCCGUC-AACGAGGAAUUCCUAGU
AAGCACUAUUUCAUC-AGAAUGUGCUGAUUAUGUCCCUGUCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGAAUGUUU-UAGUGAGAUCUUC-GGCUU-GGUUU----UC-CGAG-
CGGCU-CUCG---GGUCGUUCGGUU---UUUAUCGAAAAG----------AUGCUCAAAC
UGGAUCAUUUAGAGGAAGUAAAAGUCGUAACAAGGUAUUCGUAGGUGAACCUGCGUAUGG
AUCAUUACCGUU----------
>Aedes_albopictus
----------------AUUCUGGUUGAUCCUA-CCAGUAA-UAU-ACGCUUGUCUC-A-A
AGGUUAAGCCAUGCAUGUCUAAGUACAAACAG--------------------AU---U-U
-----------------------AAU-GU--GA-AAC-C-GCA-UAAGGCUCAGUAUAAC
AGCUAUAAU-UUACAAGAUC-AUUUAACUAGUU--------ACUUGG--AUAACUG--U-
G-GAAAAUCUAGAGCUAAUACAUGCAAAA--UGCAGG---A---------------A-CC
--------------------UCG-C----------------------GG----------A
A---CCUGU---GCAAUUAUUAG-UC---AA-AC-C-AAU--------C-GUCC------
------------------UCC-GU-----------------------G-ACG---CUG-G
A-GUU-GAAAUCUGGAUAAUUUUG-CU-GA--UCGUAUG-GU---------------C-U
C-G-C--------------ACCGACGACAGAUCUUUCAAAUAUCUG-CCCUAUCA-ACUA
UUGAUGGUAGUAUAGAGGACUA-CCAUGGUUGCAACGGGUAACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAAUGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGUA
AAUUACCCAAUCCCG--GC----ACGGGGAGGUAGUGACGAGAAAUAACAAUAUAAG-AC
UCU-UUUAU--GACGUCU-UAUAAUUGGAAUGAGUUGAGCA--------------UAA-A
U-C-----------------CUUCAACAAGGAUCAAGUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCACUAGCGUAUAUUAAAAUUGUUGCGGUUAAAACGUUC
GAAGUUUAUUCUUGUCCAA--CACG-G-G-UGC-UACUCCU-----------------UU
AUGAUGGC-----------------------A-G-UA-G----GUCACUGGAUUGUUGCG
ACUAUA-----------------AGACUGGGU----------------------------
-------------------------------------GCGCCCGUCGGCC--UCGCGGUC
GGCGCGGUCGU----AGUG--UGGC-G-CUGAUGCCU-UUCAUC-GGGU--GCAG--U--
-----GUUUC--CGCAAGCCCAGCUGCU-AUUACCUUGAACAAAUUAGAGUGCUCUAAGC
AGGC----UAUC-CUACG-----G-C--C-GAGAAU-AAC-U-UGCAUGGAAUAAUGGAA
UAUGA----------CC-U--CGGUCUUAAU-AU-UC-AUU-GGUU-UGUAAU-CAG-AU
-CAAGAG-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAC-AGAAGUAGUU
G-GGGGCAUUAGUA-UUACGGCGCGAGAGGUGAAAUUCGUAGACCGUCGUAAGACUAACU
AAAGCGAAACGAUUUGCCAUGGAUGCUUUCAUUAAUCAAGAACGAAAGUUAGAGGAUCGA
AGGCGAUUAGAUACCGCC-CUAGUUCUAACCGUAAACUAUGC-CAAUUAGCAAUUGGGAG
ACGCU-------------------------------------------------------
-ACAUUAU----------------------------------------------------
-------------------GGUGCUCUCAGUAGCUUCCGGGAAACC-A--AAAU------
---U--AGGUU-CCGGGGGAAGUAUGG-UUGCAAAGU-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-ACUU-
A-CCA-GGU-CC-GAACUUAU-UGA-GGUAAGA-CAGAUUAAUAGC-UCUU-U-CUCAA-
--------------------AAUU-AAGG-GUAGUGGUGCAUGGCCGUUCUUAGUUCGUG
GA-AUGAUUUGUCUGGUUAAUUCCGAUAACGAACGUGACUCA-AUCAAAUUAAAUAGAAC
GCUAUCA-----------------------------------------------------
--------------------------------GCAGUCAGAUGUUUGAUACCGACGGUUC
GGGCAACGGUCGC---UCGC-GCGUCGCGCUCGGCCGGCGGUGUAGUGUGACCUGAUAAU
ACGUCAACCCAUCG----------------------------------------------
-------------------------------------------------UG-G-----U-
--U-G--A-C----UUCUGCUUAAUAGGACA-AUUU-G----UGU-UCAGC-AA-AAUGA
-G-AUUGAGCGAUAACAGGUCCGUGAUGCCCUUAGAUGUUCUGGGCUGCACGCGCGCUAC
AAUG-UGCGCAGCAACGCGU----------------------------------------
---------------------AU-CCUUGCCCGAAAGGGCCGGGAAA-UCGC--UUAAAU
GCG-CAUUUAGUCGGGAUUAUGGAUUGAAAUGGUCCAU-AUG-AACCUGGAAUUCC-AGU
AAGUGCUG-GUCAUU-AGCUAGCGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAU-GGAUUAUU-UAGUGAGGUCUUU-GAAGG-UGAAC-AU-UU-GCUA-
GUCCC-UC-G--GGAU-UA-CAUUU-GAA-U-CGCUGAAGUUGACCGAACUUGACCGAAC
UUGAUGAUUUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Anolis_carolinses
------------------CCUGGUUGAUCCUG-CCAGUAG-CAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUACACACGGG-------------------CG---U-U
-----------------------ACA-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUGGU-UCCUUUGGUC-GCUCCCCCCGUU--------CCUUGG--AUAACUG--U-
G-GUAAUUCUAGAGCUAAUACAUGCCGACG-AGCGCU---G---------------A-CC
---U-----------------CC-G-----------------G----GG----------A
----UGCGU---GCAUUUAUCAGACC---AAAAC-C-AAC--------C-CGGG------
------------------CUC-G-----------------------CC-CGGCC-GCU-U
U-GGU-GA-CUCUAGAUAACCUCGGGCCGA--UCGCACG-CC---------------C-C
C-G-U--------------GGCGGCGACGACGCAUUCGAAUGUCUG-CCCUAUCA-ACUU
UCGAUGGUACUUUCUGCGCCUA-CCAUGGUGACCACGGGUAACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCACUCCCG--AC----CCGGGGAGGUAGUGACGAAAAAUAACAAUACAGG-AC
UC--UU-UC--GAGGCCC-UGUAAUUGGAAUGAGUCCACUU--------------UAA-A
U-C-----------------CUUUAACGAGGAUCCAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUCUUAAAGUUGCUGCAGUUAAAAAGCUC
GUAGUUGGAUCUUGGGAUCG-AGCU-G-G-CGG-UCCGCC--------------------
-GCGA----------------------------G-GC-GA---GCUACCGCCUGUCCCAG
CCCCUGCC----------------UCUCGGCG----------------------------
------------------------------------------------------------
---------------------CUCC-CCCGA-UGCUC-UUAACU-GAGU--GUCC-CG--
-----GG-GG--------UCCGA-AGCG-UUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC-----CG---CUC------G-C--C--GGAAU-ACU-CCAGCUAGGAAUAAUGGAA
UAGGA----------CU-C--CGGUUCU--A-UU-UU-GUU-GGUU-----UUCGGA-AC
--U-GGG-GCC-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAG-AGGGACGGCC
G-GGGGCAUUCGUA-UUGUGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGAACC
AGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGA
AGACGAUCAGAUACCGUC-GUAGUUCCGACCAUAAACGAUGC-CGACUAGCGAUCCGGCG
GCGUU-------------------------------------------------------
-AUUCCCAU---------------------------------------------------
-------------------GACCCGCCGGGCAGCUUCCGGGAAACC-A--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UUGCAAAGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACCCAACACGGGAAA-CCUC-
A-CCC-GGC-CC-GGACACGG-AAA-GGAUUGA-CAGAUCGAUAGC-UCUU-U-CUCGA-
--------------------UUCU-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCU-GGCAUGCUAACUAGUUA
UGCGACC-----------------------------------------------------
------------------------------------------------------------
---------------CC-CG--AGC-----------------------------------
------------------------------------------------------------
-----------------------------------------------G-GU-C-----G-
--G-C--G-UCC--AACUUCUUAGAGGGACA-AGUG-G----CGU-UCAGC-CA-CCCGA
-G-AUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUAC
ACUG-ACUGGCUCAGCGUGU-------------------------------GUC------
---------------------UACCCUACGCCGACAGGUGCGGGUAACCCGU--UGAACC
CCA-UUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUG-AACGAGGAAUUCCCAGU
AAGUGCGG-GUCAUA-AGCUCGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGGAUGGUU-UAGUGAGGUCCUC-GGAUC-GGCCC-CG-CC-GGGG-
UCG-G-C-CA---CGG-CCCUGGCG-GAGCG-CCGAGAAG----------ACGGUCGAAC
UUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAG-
----------------------
>Arabidopsis_thaliana
----------------UACCUGGUUGAUCCUG-CCAGUAGUCAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUGUAAGUAUGAACGAAU------------------UC---A-G
-----------------------ACU-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUAGU-UUGUUUGAUG-GUAACUACU-----------ACUCGG--AUAACCG--U-
A-GUAAUUCUAGAGCUAAUACGUGCAACA--AACCCC---G---------------A-CU
---------------------UA-U----------------------GG----------A
A---GGGAC---GCAUUUAUUAGAUA--AAAGGU-C-GAC--------G-CGGGC-----
------------------UCU------------------------GCC-CGUUG-CUC-U
--GAU-GA-UUCAUGAUAACUCGA-CG-GA--UCGCAUG-GC---------------C-U
CUG-U--------------GCUGGCGACGCAUCAUUCAAAUUUCUG-CCCUAUCA-ACUU
UCGAUGGUAGGAUAGUGGCCUA-CCAUGGUGGUAACGGGUGACGGAGAAUUAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCAAUCCUG--AC----ACGGGGAGGUAGUGACAAUAAAUAACAAUACUGG-GC
UC--UU-UC--GAGU-CU-GGUAAUUGGAAUGAGUACAAUC--------------UAA-A
U-C-----------------CCUUAACGAGGAUCCAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUUAAGUUGUUGCAGUUAAAAAGCUC
GUAGUUGAACCUUGGGAUGG-GUCG-G-C-CGG-UCCGCC--------------------
-UUU-----------------------------G-GU-G----UGCAUUGGUCGGCUUGU
CCCUU-------------------CGGUCGGCG---------------------------
------------------------------------------------------------
---------------------AUAC-GCUCC-UGGUC-UUAAUU-GGCC--GGGU--C--
-----GU-GCC------UCCGGC-GC-U-GUUACUUUGAAGAAAUUAGAGUGCUCAAAGC
AAGC------C--UAC-------G-C--U-CUGGAU-ACA-UUAGCAUGGGAUAACAUCA
UAGGA----------UU-U--CGAUCCU--A-UU-GU-GUU-GGCC-----UUCGGG-AU
--C-GGA-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAC-AGGGACAGUC
G-GGGGCAUUCGUA-UUUCAUAGUCAGAGGUGAAAUUCUUGGAUUUAUGAAAGACGAACA
ACUGCGAAAGCAUUUGCCAAGGAUGUUUUCAUUAAUCAAGAACGAAAGUUGGGGGCUCGA
AGACGAUCAGAUACCGUC-CUAGUCUCAACCAUAAACGAUGC-CGACCAGGGAUCAGCGG
AUGUU-------------------------------------------------------
-GCUUAUAG---------------------------------------------------
-------------------GACUCCGCUGGCACCUUAUGAGAAAUC-A--AAGUU-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAA-ACUU-
A-CCA-GGU-CC-AGACAUAG-UAA-GGAUUGA-CAGACUGAGAGC-UCUU-U-CUUGA-
--------------------UUCU-AUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUAAUUCCGUUAAUGAACGAGACCUC-AGCCUGCUAACUAGCUA
CGUGGAGG----------------------------------------------------
------------------------------------------------------------
----------------C-AU--C-------------------------------------
------------------------------------------------------------
--------------------------------------------C--C-UU-C-------
--A-C--G-GCC--GGCUUCUUAGAGGGACU-AUGG-C----CGU-UUAGG-CC-AAGGA
AGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUUCUGGGCCGCACGCGCGCUAC
ACUG-AUGUAUUCAACGAGU-------------------------------UCAC-----
----------------------A-CCUUGGCCGACAGGCCCGGGUAA-UCUU--UGAAAU
UUC-AUCGUGAUGGGGAUAGAUCAUUGCAAUUGUUGGUCUUC-AACGAGGAAUUCCUAGU
AAGCGCGA-GUCAUC-AGCUCGCGUUGACUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUCCUACCGAUUGAAUGAUC-CGGUGAAGUGUUC-GGAUC-GCGGC-GA-CG-UGGG-
UGG-U-UC-G---CCG-CCCGCGAC-G-U-C-GCGAGAAG----------UCCACUAAAC
CUUAUCAUUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUG---------------
>Caenorhabditis_briggsae
---------------AUACCUGAUUGAUUCUG-UCAGCGC-GAU-AUGCUCAAGUA-A-A
AGAUUAAGCCAUGCAUGCUUUGAUUCA--------------------------U---C-A
-----------------------A----U--GA-AAU-U-GCG-UACGGCUCAUUAGAGC
AGAUAUCACCUUGUUCGGAA-UCCUA---------------AUAUGG--AUAACUG--C-
G-GAAAUACUGGAGCUAAUACAUGCAACUA-AACCCC---A---------------A-C-
--------------------GUA-A-----------------------G----------G
C---GGGGU---GCAAUUAUUAGAAC---AG-AC-C-AAA--------C-GUU-------
------------------UUC-G------------------------G-ACGUU-GUU-U
--GUU-GA-CUCUGAAUAAAGCAG-UU-UA--CUGUCAG-U----------------U-U
C-G-A---------------CUGACUCUAUCCGAAAAGGGUGUCUG-CCCUUUCA-ACUA
--GAUGGUAGUUUAUUGGACUA-CCAUGGUUGUUACGGGUAACGGAGAAUAAGGGUUC-G
ACUCCGGAGAGGGAGCCUUAGAAACGGCUACCACGUCCAAGG-AAGGCAGCAGGCGCGAA
ACUUAUCCACUGUU---GA----G-UAUGAGAUAGUGACUAAAAAUAUAAAGACUCA-UC
C---UU-UU---GGA-UG-AGUUAUUUCAAUGAGUUGAAUA--------------CAA-A
U-G-----------------AUUCUUCGAGUAGCAAGGAGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCUCCUAGUGUAUCUCGUUAUUGCUGCGGUUAAAAAGCUC
GUAGUUGGAUCUAGGUUACG-UGCU-G---CAG-UUCGCA--------------------
-AUU-----------------------------U-GC-G----UCAACUGUAGUCGUGAC
UUCUAAUU----------------UGCUGGUU----------------------------
------------------------------------------------------------
------------------------U-G-AGG-UUGGG--UCCG--CCCU--UCAA--C--
------U-----------GCCAG-CAGG-UUUACCUUGAAUAAAUCAGAGUGCUCAAAAC
AAGU------G--UUU-------G-C--U--UGAAU-AGC-UCAUCAUGGAAUAAUGAAA
CAGGA----------CU-U--CGGUUCU----UU-UU-GUU-GGUU------CUAGA-AC
--U-GAU-UUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGGUUAAG-AGGGACAAAC
CGGGGGCAUUCGUA-UCAUUACGCGAGAGGUGAAAUUCGUGGACCGUAGUGAGACGCCCA
ACAGCGAAAGCAUUUGCCAAGAAUGUCUUCAUUAAUCAAGAACGAAAGUCAGAGGUUCGA
AGGCGAUUAGAUACCGCC-CUAGUUCUGACCGUAAACGAUGC-CAUCUCGCGAUUCGGAG
GGU---------------------------------------------------------
---UUUU-----------------------------------------------------
-------------------GCCCUGCCGAGGAGCUAUCCGGAAACG-A--AAGUC-----
---UUUCGGUU-CCGGGGGUAGUAUGG-UUGCAAAGC-UGAAACUUAAAGAAAUUGACGG
AAGGGCACCACAA-GGCGUGGAGCUUGCGGCUUAAUUUGACUCAACACGGGAAA-ACUC-
A-CCC-GGU-CC-GGACACCA-UUA-GGACUGA-CAGAUUGAAAGC-UCUU-U-CUCGA-
--------------------UUUG-GUGG-UUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGGUUUAUUCCGAUAACGAGCGAGACUCU-AGCCUGCUAAAUAGUUG
GCGAAUC-----------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
--------------------------------------------G--G-UU-C-------
--G-U--A-U----AACUUCUUAGAGGGAUA-AGCG-G----UGU-UUAGC-CG-CACGA
-G-AUUGAGCGAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGUGCUAC
ACUG-GUGGACUCAGCGGGU-------------------------------U--------
---------------------UUUCCUAUGCCGAAAGGUAUCGGUAA-ACCG-UUGAAAU
UCU-UCCAUGUCCGGGAUAGGGUAUUGUAAUUAUUGCCCUUA-AACGAGGAAUGCCUAGU
AAGUGUGA-GUCAUC-AGCUCACGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUAUCCGGGACUGAACUGAU-UCGAGAAGAGUGG-GGACU-GUCGC-UU-CG-AGGU-
U---U-AA-C-----G-ACUUCGUU-G-U-U-GCGGAAAC----------CAUUUUUAUC
GCAUUGGUUUGAACCGGGUAAAAGUCGUAACAAGGUAGCUGUAGGUGAACCUGCAGCUGG
AUCAUCG---------------
>Caenorhabditis_elegans
------------------UCUGGUUGAUCCUG-CCAGUAGUCAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGCUUUGAUUCA--------------------------U---C-A
-----------------------A----U--GA-AAU-U-GCG-UACGGCUCAUUAGAGC
AGAUAUCACCUUAUCCGGGA-UCCUC---------------AUAUGG--AUAACUG--C-
G-GAAAUACUGGAGCUAAUACAUGCAACUA-UACCCC---A---------------A-C-
--------------------GCA-A-----------------------G----------G
C---GGGGU---GCAAUUAUUAGAAC---AG-AC-C-AAA--------C-GUU-------
------------------UUC-G------------------------G-ACGUU-GUU-U
--GUU-GA-CUCUGAAUAAAGCAG-UU-UA--CUGUCAG-U----------------U-U
C-G-A---------------CUGACUCUAUCCGGAAAGGGUGUCUG-CCCUUUCA-ACUA
--GAUGGUAGUUUAUUGGACUA-CCAUGGUUGUUACGGGUAACGGAGAAUAAGGGUUC-G
ACUCCGGAGAGGGAGCCUUAGAAACGGCUACCACGUCCAAGG-AAGGCAGCAGGCGCGAA
ACUUAUCCACUGUU---GA----G-UAUGAGAUAGUGACUAAAAAUAUAAAGACUCA-UC
C---UU-UU---GGA-UG-AGUUAUUUCAAUGAGUUGAAUA--------------CAA-A
U-G-----------------AUUCUUCGAGUAGCAAGGAGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCUCCUAGUGUAUCUCGUUAUUGCUGCGGUUAAAAAGCUC
GUAGUUGGAUCUAGGUUACG-UGCC-U-C-AGA-UUCGCA--------------------
-AUU-----------------------------U-GC-G----UCAACUGGGGGUCGUGA
CUUCUAAUU---------------UGCCGGUCU---------------------------
------------------------------------------------------------
----------------------------U-G-AGUCC-UUAACA-GGAU--UCUU-AA--
-----CA-GG--------CAUUG-CAAG-UUUACUUUGAACAAACCAGAGUGCUUCAAAC
AGGC------GU-UUUC------G-C--U--UGAAU-GGU-CGUGCAUGGAAUAAUAGAA
AACGA----------UU-U--CGGUUCA--G-UU-UU-AUU-GGUU-----UUACGG-AC
--U-GAG-AUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGGUUAAC-AGAGACAAAC
G-GGGGCAUUUGUA-UGGCCCCGUGAGAGGUGAAAUUCUUGGACCGUGGCCAGACAAACU
ACAGCGAAAGCAUUUGCCAAGAAUGUCUUCAUUAAUCAAGAACGAAAGUCAGAGGUUCGA
AGGCGAUUAGAUACCGCC-CUAGUUCUGACCGUAAACGAUGC-CAUCUCGCGAUUCGGAG
GGU---------------------------------------------------------
---UUUU-----------------------------------------------------
-------------------GCCCUGCCGAGGAGCUAUCCGGAAACG-A--AAGUC-----
---UUUCGGUU-CCGGGGGUAGUAUGG-UUGCAAAGC-UGAAACUAAAGGAAAUUGACGG
AAGGGCACCACAA-GGCGUGGAGCUUGCGGCUUAAUUUGACUCAACACGGGAAA-ACUC-
A-CCC-GGU-CC-GGACACCA-UUA-GGACUGA-CAGAUUGAAAGC-UCUU-U-CUCGA-
--------------------UUUG-GUGG-UUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGGUUUAUUCCGAUAACGAGCGAGACUCU-AGCCUGCUAAAUAGUUG
GCGAAUC-----------------------------------------------------
------------------------------------------------------------
----------------U-UC--G-------------------------------------
------------------------------------------------------------
--------------------------------------------G--G-UU-C-------
--G-U--A-U----AACUUCUUAGAGGGAUA-AGCG-G----UGU-UUAGC-CG-CACGA
-G-AUUGAGCGAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGUGCUAC
ACUG-GUGGAGUCAGCGGGU-------------------------------U--------
---------------------UUUCCUAUGCCGAAAGGUAUCGGUAA-ACCG-UUGAAAU
UCU-UCCAUGUCCGGGAUAGGGUAUUGUAAUUAUUGCCCUUA-AACGAGGAAUGCCUAGU
AAGUGUGA-GUCAUC-AGCUCACGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUAUCCGGGACUGAACUGAU-UCGAGAAGAGUGG-GGACU-GUCGC-UU-CG-AGGU-
U---U-AA-C-----G-ACUUCGUU-G-U-U-GCGGAAAC----------CAUUUUUAUC
GCAUUGGUUUGAACCGGGUAAAAGUCGUAACAAGGUAGCUGUAGGUGAACCUGCAGCAGG
AUCA------------------
>Cryptosporidium_hominis
----------------AACCUGGUUGAUCCUG-CCAGUAGUCAUAAUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUAUAAACUU--------------------UU---A-U
-----------------------ACG-GU--UA-AAC-U-GCG-AAUGGCUCAUUAUAAC
AGUUAUAGU-UUACUUGAUA-AUCUUUUACUU---------ACAUGG--AUAACCG--U-
G-GUAAUUCUAGAGCUAAUACAUGCGAAA--AAACUC---G---------------A-CU
--------------------UUA-U----------------------GG----------A
A---GGGUU---GUAUUUAUUAGAUA--AAGAAC-C-AAU--------------------
------------------AUA-A----------------------------------U-U
--GGU-GA-CUCAUAAUAACUUUA-CG-GA--UCACAAU-U----------------A-A
U-G-U--------------------GACAUAUCAUUCAAGUUUCUG-ACCUAUCA-GCUU
UAGACGGUAGGGUAUUGGCCUA-CCGUGGCAAUGACGGGUAACGGGGAAUUAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCUAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCAAUCCUA--AU----ACAGGGAGGUAGUGACAAGAAAUAACAAUACAGG-AC
U---UU-UU---GGU-UU-UGUAAUUGGAAUGAGUUAAGUA--------------UAA-A
C-C-----------------CCUUUACAAGUAUCAAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUC
GUAGUUGGAUUUCUGUUAAU-AU-------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------UUAG--UAU------
-------------------AUGA-AA-U-UUUACUUUGAGAAAAUUAGAGUGCUUAAAGC
AGGC------A--UAU-------G-C--C-UUGAAU-ACU-CCAGCAUGGAAUAAUAUUA
AAG-A----------UU-U--UUAUCUU----UU-UU-AUU-GGUU------CUAAG-AU
--A-AGA-AUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAU-AGGGACAGUU
G-GGGGCAUUUGUA-UUUAACAGUCAGAGGUGAAAUUCUUAGAUUUGUUAAAGACAAACU
AAUGCGAAAGCAUUUGCCAAGGAUGUUUUCAUUAAUCAAGAACGAAAGUUAGGGGAUCGA
AGACGAUCAGAUACCGUCCGUAGUCUUAACCAUAAACUAUGC-CAACUAGAGAUUGGAGG
UUGUU-------------------------------------------------------
----CCU-----------------------------------------------------
-------------------UACUCCUUCAGCACCUUAUGAGAAAUC-A--AAGUC-----
---UUUGGGUU-CUGGGGGGAGUAUGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-ACUC-
A-CCA-GGU-CC-AGACAUAG-GAA-GGAUUGA-CAGAUUGAUAGC-UCUU-U-CUUGA-
--------------------UUCU-AUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCUU-AACCUGCUAAAUAGACA
UAAGAAAUA---------------------------------------------------
------------------------------------------------------------
----------------U-UA----------------------------------------
------------------------------------------------------------
-------------------------------------------UA--U-UU-U-------
--U-UAUC-U----GUCUUCUUAGAGGGACU-UUGU-A----UGU-UUAAU-AC-AGGGA
AGUUUUAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCUGGGCCGCGCGCGCGCUAC
ACUG-AUGCAUCCAUCAAGU-----------------------------AUAUAU-----
----------------------U-CCUGUUUCGAAGGAAAUGGGUAA-UCUU-UUGAAUA
UGC-AUCGUGAUGGGGAUAGAUCAUUGCAAUUAUUGAUCUUG-AACGAGGAAUUCCUAGU
AAGCGCAA-GUCAUC-AGCUUGCGCUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUCCUACCGAUUGAAUGAUC-CGGUGAAUUAUUC-GGACC-AUACU-UU----GUA--
----G-CA-A--------UAC--AU---G-U-AAGGAAAG----------UUUCGUAAAC
CUUAUCAUUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUC---------------
>Cyanidioschyzon_merolae
----------------UACCUGGUCGAUCCUG-CCAGUAGUCAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUAUAAACCAGU------------------UU---A-U
-----------------------ACG-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAAC
AGUUAUCGU-UUAUUUGAUG-GUACCUCCU-----------ACAUGG--AUAACCG--U-
A-GGAAUUCUACAGCUAAUACAUGCCCAC--ACACCC---G---------------A-CU
---------------------UU-G----------------------GA----------A
----GGGUG---GGAUUUAUCAGCUA--CAAAAC-C-AAA--------C-CGC-------
------------------CUC-G------------------------G-CGG---UCUCU
--GGU-GA-UUCAUGGUAACUGUC-CG-GA--UCGCAUG-UC---------------CUU
C-G-G--------------GAUGGCGACAGAUCAUAUAAAUUUCUG-CCCUAUCA-ACUU
UCGAUGGUAGGAUAGAGGCCUA-CCAUGGUGGUAACGGGUAACGGGGAAUUAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCAAUCCUG--AC----UCAGGGAGGUAGUGACAAGAAAUAACGAGACCGG-GC
UC--UU--C--GAGU-CC-GGUAAUCGGAAUGAGUACAACU--------------UAA-A
U-A-----------------ACUUAACGAGGAUCCAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAACGCUC
GUAGUCGCAGCUCGGACGCG-GCCC-A-C-GGG-CCGGCC--------------------
-GCAG----------------------------G-CU-U----GCGCCGGUGGGCCGGGU
CUUU--------------------CGGCUGG-----------------------------
------------------------------------------------------------
----------------UGAG--CGC-G-CGG-GGUCC--UCGCG-GGCUC-CGCG--C--
-----GG----CGAG---CCAGC-CC-G-UUUACUGUGAACAAAUUAGAGUGCUCCAGGC
AGGC------G--UUC-------G-C--A--UGCAU-ACG-UUAGCAUGGAAUAAUAGAA
UAUAGG--------ACU-U--GGGUCCU--G-UU-UU-GUU-GGUU-----UUGAGG-GC
--C-GAA-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUGAAU-AGGGACAGUC
G-GGGGCAUUCGUA-UUCCAUUGUCAGAGGUGAAAUUCUUGGAUUUAUGGAAGACGAACA
ACAGCGAAAGCAUCUGCCAAGGAUGUUUUCAUUGAUCAAGAACGAAAGUUAGGGGAUCGA
AGACGAUUAGAUACCGUC-GUAGUCUUAACCAUAAACGAUGC-CGACUCGGGAUCGGUGG
AGCAC-------------------------------------------------------
---AAGA-----------------------------------------------------
-------------------UACUCCAUCGGCACCGUAGGAGAAAUC-A--AAGUG-----
---UUUGGGUU-CUGGGGGGAGUAUGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-ACUU-
A-CCA-GGU-CC-GGACAUAG-GGA-GGAUUGA-CAGAUUGAGAGC-UCUU-U-CUUGA-
--------------------UUCU-AUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCUU-AACCUGCUAACUAGCGG
CGCGAAA-----------------------------------------------------
------------------------------------------------------------
----------------C-GC--G-------------------------------------
------------------------------------------------------------
--------------------------------------------G--U-UU-C-------
--G-CG---GU---CGCUUCUUAGAGGGACG-AUCU-G----CGU-CUAGC-AG-AGGGA
AGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCUGGGCUGCACGCGCGCUAC
ACUG-AUGCAGGCAACGAGC-------------------------------GC-------
----------------------C-GCUGCGCCGAGAGGCGUGGCGAA-UCUG-CC-AAUC
UGC-AUCGUGCUGGGGAUAGACCCUUGGAAUUAUGGGUCUUC-AACGAGGAAUUCCUUGU
AAGCGCGA-GUCAUC-AGCUCGCGCUGAAUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUCCUACCGAUUGAAUGAUC-CGGUGAGUUGUCC-GGACG-GGCGC-GCCAC-CGGC-
CGG-U-UC-G---CCG-GCGCGGGC-G-C-G-CCCGAAAG----------CUCAACAAAC
CUUAUCAUUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUCUCAAACGGAACAC--
>Danio_rerio
----------------UACCUGGUUGAUCCUG-CCAGUAA-CAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAGGUCUAAGUGCACACGGC-------------------CG---G-U
-----------------------ACA-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUGGU-UCCUUUGAUC-GCUCCAUCCGUU--------ACUUGG--AUAACUG--U-
G-GCAAUUCCAGAGCUAAUACAUGCCAACG-AGCGCC---G---------------A-CC
---CG---------G-UCCCCCC-GGGGG-----------CCGG---GG----------A
----CGCGU---GCAUUUAUCAGAUCC--AAAAC-CCA-U--------C-CGGGUGCGGC
GUGGGCUCCCC--C----CUC-G---GGGGUCGGGCCU----CGUCCCCCGGCC-GCU-U
U-GGU-GA-CUCUAGAUAACCUCGGGCCGA--UCGCGCG-CC---------------C-U
CCG-C--------------GGCGGCGACGAUUCAUUCGAAUGUCUG-CCCUAUCA-ACUU
UCGAUGGUACUUUAGGCGCCUA-CCAUGGUGACCACGGGUAACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCAUUCCCG--AC----ACGGGGAGGUAGUGACGAAAAAUAACAAUACAGG-UC
UC--UU-UC--GAGGCCC-UGUAAUUGGAAUGAGCGUAUCC--------------UAA-A
C-C-----------------CAUGGGCGAGGACCCAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUC
GUAGUUGGAUCUCGGGAGUG-GGCU-G-G-CGG-UCCGCC--------------------
-GCGA----------------------------G-GC-GA---GCCACCGCCUGUCCCGG
ACCCUGCC----------------UCCCGGCG----------------------------
------------------------------------------------------------
---------------------CCCC-CCGGA-UGCCC-UUAGCU-GGGU--GUCC--GGU
ACCUCGG-GG--------CCCGG-AGCG-UUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC----CGCCCAGCC------G-CCGC--UGAAU-ACC-GCAGCUAGGAAUAAUGGAA
UAGGA----------CU-C--CGGUUCU--A-UU-UU-GUG-GGUU-----UCUGGA-AC
--C-CGGGGCC-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUGAG-AGGGACGGCC
G-GGGGCAUUCGUA-UUGCGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGGACG
AAAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGA
AGACGAUCAGAUACCGUC-GUAGUUCCGACCGUAAACGAUGC-CGACCCGCGAUCCGGCG
GCGUU-------------------------------------------------------
-AUUCCCAU---------------------------------------------------
-------------------GACCCGCCGGGCAGCGUGCGGGAAACC-AC-GAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UUGCAAAGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-CCUC-
A-CCC-GGC-CC-GGACACGG-AAA-GGAUUGA-CAGAUUGAUAGC-UCUU-U-CUCGA-
--------------------UUCU-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUCAUUCCGAUAACGAACGAGACUCC-GGCAUGCUAAAUAGUUA
CGCGGCC-----------------------------------------------------
------------------------------------------------------------
----------------C-CG--CGC-----------------------------------
------------------------------------------------------------
-----------------------------------------------G-GU-C-----G-
--G-C--G-UC-CCAACUUCUUAGAGGGACA-AGUG-G----CGU-UCAGC-CA-CGCGA
-G-AUGGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCCAC
AAUG-GGCGGAUCAACGUGU-------------------------------GCC------
---------------------UACCCUGCGCCGAGAGGCGCGGGUAACCCGU--UGAACC
CCG-CUCGUGAUUGGGACUGGGGCUUGAAACUGUUUCCCAUC-AACGAGGAAUUCCCAGU
AAGCGCAG-GUCAUA-AGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGGAUGGUU-UAGUGAGGUCCUC-GGAUC-GGCCC-CG-CC-GGGGC
UCC---UC-GC--CGGGCCCUGGCG-GAGCG-CCGAGAAG----------ACGAUCAAAC
UUGAUCCUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Dictyostelium_discoideum
-----------AUGCUUAACUGGUUGAUCCUG-CCAGUAGUCAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUAUAAAUU---------------------CU---U-G
U----------------------ACG-AU--GA-AAC-U-GCA-GACGGCUCAUUACAAC
AGUGAUAAA-CUAAUAGACU-UUCGGGUUUUACCU------U-UUGG--AUAACCG--C-
A-GUAAAUC-GGGGCUAAUACAUACAAGCG-AUGGGU-GA-----------------CUG
--------------------GCA-A----------------------CGG----------
-AA-GCUCA---GCGAUUAUUAGCAU------UC-U-ACC--------A-AU--------
------------------GCC-U------------UCG----GG-------U----UU-U
G-GGU-GA-UACCGAAUAAUAUUG-CA-GA--UCGAGGA-UU---------------U-A
UCU-U-------------------CGACAAGUCUACUGUGUCACUG-CCCUAUCA-ACUU
UCGAUGGUACGGUAUUGGCCUA-CCAUGGUUGUAACGGGUAACGGGGAAUUAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAAUGGCUACCACUUCUACGG-AAGGCAGCAGGCGCGCA
AAUUACUCAAUCCCA--AU----ACGGGGAAGUAGUGACAAUAAAUAUCAAUACCUA-UC
CU--UU-UU----GG-AG-GGCAAUUGAAAUGAACACAAAU--------------UAA-A
A-C-----------------UCUUAAUUAACA-CAAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCAUAUACUAAAGUUGUUGCAGUUAAAAAGCUC
GUAGUUGAAGUUUAAGGUUU-ACCG-G-G--UU-UAUGUCAUUUACCA------------
CUUCGU-----------------G-GUUAA-AU-CGA-C-----ACCGGUAUCUCUUUCU
UA----------------------AUAGUUCAG---------------------------
------------------------------------------------------------
---------------------CUUG-U--AU-UAUCU-UUGA-UA-------GUG--C--
-----UU-G--------UUUGGA-CA-U-UUCACUGUGAGAAAAUUGUGGUGUUUAAAGC
AGGC------G--UCU-------C-G--C--UGAUCUUUU-GCAGCAUGGUAUGAUGAAA
CAUGA----------CA-U--U----UU--A-CG-CU-AUU-GGUUU------GCGUUUA
--A-AGU-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAU-AGGGAUGGAU
G-GGGGUGUUCAUA-UUGGUGGGCGAGAGGUGAAAUUCGUUGACCCUAUCAAGAUGAACU
UCUGCGAAAGCAUUCACCAAAUACUUCCCCAUUAAUCAAGAACGAAAGUUUGGGGAUCGA
AGACGAUCAGAUACCGUC-GUAGUCCAAACUAUAAACUAUGU-CGACCAGGGAUCGGUUA
AAAUUU------------------------------------------------------
---UUUCA----------------------------------------------------
------------------AAAUUUAAUCGGCACCUUGUGAGAAAUC-AU-GAGUG-----
---UUUAGAUU-CCGGGGGGAGUAUGG-UCGCAAGUC-UGAAACUUAAAGGAAUUGACGG
AAGGGCA-CACAAUGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACUCGGGAAA-ACUU-
A-CCA-AGC-UA-AGAUAUAG-UAA-GGAUUGA-CAGACUAAAAGA-UCUU-U-CAUGA-
--------------------UUCU-AUAA-GUGGUGGUGCAUGGUCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUCAAUUCCGAUAACGGACGAGACCUC-GACCUGCUAACUAGUAG
UAUUUAUUA--------GUCGAUAUAGACG-AUA----GCUU-----U-UC-UG------
-GGGU-UUG---------------------------------------------------
----------------G-AA--U-------------------------------------
-------------------------------------GAU---UUC---------GGUCA
U-CUCCUGCUUCAAGGAGUGUGU-A--GUCUGACU---CGAUAG---G-UACG-------
--A-A----U-UAAAACUUCUUAGAGGGACU-ACCU-G----CCU-CAAGC-AG-GCGGA
AGUCCGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUACCUUGGGCCGCACGCGCGCUAC
AAUG-UAGGAAACAAAAAGG-------------------------------C--------
----------------------U-CCUGGUCCGGAAGGAUUGGGUAA-UCAU-UUGAAUU
UCC-UACGUAACUGGGCUUGAUCUUUGUAAUUAUUGAUCAUA-AACGAGGAAUUCCUUGU
AAGCGUAA-GUCAUU-ACCUUAUGCUGAAUAUGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUCCUACCGAUCGAAUGAUA-CGGUAAAGUUAAC-GGAUC-GUUUUAUC-UGUG----
----G-CA-ACA--------CUGAU-A-U-AAAUUAAAAG----------UUAUUUAAAU
CUCAUUGUUUAGAGGAAGGAGAAGUCGUAACAAGGUAUCCGUAGGUGAACCUGCGGAUGG
AUCAUUU---------------
>Drosophila_melanogaster
----------------AUUCUGGUUGAUCCUG-CCAGUAGUUAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUACACACGA--------------------AU---U-A
-----------------------AAA-GU--GA-AAC-C-GCA-AAAGGCUCAUUAUAUC
AGUUAUGGU-UCCUUAGAUC-GUUAACAGUU----------ACUUGG--AUAACUG--U-
G-GUAAUUCUAGAGCUAAUACAUGCAAUUAAAACAUG---A---------------A-CC
--------------------UUA-U-----------------G----GG----------A
----CGUGU---GCUUUUAUUAGGCU---AAAAC-C-AA---------G-CGAUC-----
------------------GCA-A----------------------GAU-CGUUA-UAU-U
--GGUUGAACUCUAGAUAACAUG--CA-GA--UCGUAUG-GU---------------C-U
U-G-U--------------ACCGACGACAGAUCUUUCAAAUGUCUG-CCCUAUCA-ACUU
UUGAUGGUAGUAUCUAGGACUA-CCAUGGUUGCAACGGGUAACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCUAAGG-AAGGCAGCAGGCGCGUA
AAUUACCCACUCCCA--GC----UCGGGGAGGUAGUGACGAAAAAUAACAAUACAGG-AC
UCA-UAUCC--GAGGCCC-UGUAAUUGGAAUGAGUACACUU--------------UAA-A
U-C-----------------CUUUAACAAGGACCAAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCGGUUAAAACGUUC
GUAGUUGAACUUGUGCUUCA-UACG-G-G-UAG-UACAACUUACA---------------
-AUU-------------------------G-U-G-GU-U-AGUACUAUACCUUUAUGUAU
GUAAGCGUAU--------------UACCGGUG------GAGUUCUUAUAUGUGAUUAAAU
ACUUGUAUUUUUUCAUAUGUUCCUCCUAUUUAAAAAC-----------------------
---------------------CUGC-AUUAG-UGCUC-UUAAAC-GAGU--GUUA-UU--
-----GU-GG--------GCCGG-UACU-AUUACUUUGAACAAAUUAGAGUGCUUAAAGC
AGGC-----UUC-AAAU------G-C--C--UGAAUAUUC-UGUGCAUGGGAUAAUGAAA
UAAGA----------CC-U--CUGUUCU--GCUU-UC-AUU-GGUU-----UUCAGA-UC
-AA-GAG-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAU-AGAAGCAGUU
UGGGGGCAUUAGUA-UUACGACGCGAGAGGUGAAAUUCUUGGACCGUCGUAAGACUAACU
UAAGCGAAAGCAUUUGCCAAAGAUGUUUUCAUUAAUCAAGAACGAAAGUUAGAGGUUCGA
AGGCGAUCAGAUACCGCC-CUAGUUCUAACCAUAAACGAUGC-CAGCUAGCAAUUGGGUG
UAGCU-------------------------------------------------------
-ACUUUUAU---------------------------------------------------
-------------------GGCUCUCUCAGUCGCUUCCGGGAAACC-A--AAGCU-----
--UUUUGGGCU-CCGGGGGAAGUAUGG-UUGCAAAGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-ACUU-
A-CCA-GGU--C-GAACAUAA-GUG-UGUAAGA-CAGAUUGAUAGC-UCUU-U-CUCGA-
--------------------AUCU-AUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUCGUG
GA-GUGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCA-AAUAUAUUAAAUAGAUA
UCUUCAGGA--------U--U--------AU-GGUGCUGAAGCU----------------
--------------------------------------------UAUGUAGCCUUCAUUC
AUGUUGGCAGUAAAAUGCUU-AUUGUGUUUGAAUGUGUUUAUGUAAGUGGAGCCGUACC-
------------------------------------------------------------
-------------UG--------UUGGU-UUGUCCCAU-U--AU---AAGG-A-------
--C-A--C-U----AGCUUCUUAAAUGGACA-AAUU-G----CGU-CUAGC-AA-UAAUG
AG-AUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCUGGGCUGCACGCGCGCUAC
AAUG-AAAGUAUCAACGUGU------------------------------AUU-------
----------------------U-CCUAGACCGAGAGGUCCGGGUAAACCGC--UGAACC
ACU-UUCAUGCUUGGGAUUGUGAACUGAAACUGUUCACGAUG-AACUUGGAAUUCCCAGU
AAGUGUGA-GUCAUU-AACUCGCAUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGAAUUAUU-UAGUGAGGUCUCC-GGACG-UGAUC-AC-UG-UGAC-
GC--C-UU-GC---GU-GUUACGGUUGUU-U-CGCAAAAG----------UUGACCGAAC
UUGAUUAUUUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Eremothecium_gossypii
----------------UAUCUGGUUGAUCCUG-CCAGUAGUCAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUAUAAGCAAU-------------------UU---A-U
-----------------------ACA-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUCGU-UUAUUUGAUA-GUUCCUUUACU---------ACAUGG--AUAUCUG--U-
G-GUAAUUCUAGAGCUAAUACAUGCUUAA--AAUCUC---G---------------A-CC
--------------------UUU-U----------------------GG----------A
A---GAGAU---GUAUUUAUUAGAUA--AAAAAU-C-AAU--------G-UC--------
------------------UUC-G--------------------------GACUC--UU-U
--GAU-GA-UUCAUAAUAACUUUU-CG-AA--UCGCAUG-GC---------------C-U
U-G-U--------------GCUGGCGAUGGUUCAUUCAAAUUUCUG-CCCUAUCA-ACUU
UCGAUGGUAGGAUAGUGGCCUA-CCAUGGUUUCAACGGGUAACGGGGAAUAAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCAAUCCUA--AU----UCAGGGAGGUAGUGACAAUAAAUAACGAUACAGG-GC
CC--AU-AC--GGGU-CU-UGUAAUUGGAAUGAGUACAAUG--------------UAA-A
U-A-----------------CCUUAACGAGGAACAAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUC
GUAGUUGAACUUUGGGUUUG-GUUG-G-C-CCG-UCCGAU--------------------
-UUUC----------------------------U-UC-G----UGUACGGGAUCCAACCG
AACCUUUC----------------CUUCUGGCU---------------------------
------------------------------------------------------------
---------------------AACC-U---A-GGGUA--CUUGU--ACU--CU----A--
-----GG-CGA------ACCAGG-AC-U-UUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC------G--CAA-------G-C--U--CGAAU-AUA-UUAGCAUGGAAUAAUGGAA
UAGGA----------CGUU--UGGUUCU--A-UU-UU-GUU-GGUU-----UCUAGG-AC
--C-AUC-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAU-AGGGACGGUC
G-GGGGCAUCAGUA-UUCAAUUGUCAGAGGUGAAAUUCUUGGAUUUAUUGAAGACUAACU
ACUGCGAAAGCAUUUGCCAAGGACGUUUUCAUUAAUCAAGAACGAAAGUUAGGGGAUCGA
AGAUGAUCAGAUACCGUC-GUAGUCUUAACCAUAAACUAUGC-CGACUAGGGAUCGGGUG
GUGUU-------------------------------------------------------
--UUCUUAU---------------------------------------------------
-------------------GACCCACUCGGCACCUUACGAGAAAUC-A--AAGUC-----
---UUUGGGUU-CUGGGGGGAGUAUGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAA-ACUC-
A-CCA-GGU-CC-AGACACAA-UAA-GGAUUGA-CAGAUUGAGAGC-UCUU-U-CUUGA-
--------------------UUUU-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGCUUAAUUGCGAUAACGAACGAGACCUU-AACCUACUAAAUAGUGC
UGCUAGC-----------------------------------------------------
------------------------------------------------------------
----------------A-UU--U-------------------------------------
------------------------------------------------------------
-----------------------------------------------G-CU-G-------
--G-U--U-GCG--CACUUCUUAGAGGGACU-AUCG-G----UUU-CAAGC-CG-AUGGA
AGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGACGUUCUGGGCCGCACGCGCGCUAC
ACUG-ACGGAGCCAGCGAGU-------------------------------AUA------
----------------------A-CCUUGGCCGAGAGGUCUGGGUAA-UCUU-GUGAAAC
UCC-GUCGUGCUGGGGAUAGAGCAUUGCAAUUAUUGCUCUUC-AACGAGGAAUUCCUAGU
AAGCGCAA-GUCAUC-AGCUUGCGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUAGUACCGAUUGAAUGGCU-UAGUGAGGCCUCA-GGAUC-UGCUU-AG-AG-GAGG-
GG--G-CA-A----CU-CCACCUCA-G-A-G-CGGAAAAU----------CUGGUCAAAC
UUGGUCAUUUAGAGGAACUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Gallus_gallus
----------------UACCUGGUUGAUCCUG-CCAGUAG-CAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUACACACGGG-------------------CG---G-U
-----------------------ACA-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUGGU-UCCUUUGGUC-GCUCCCCUCCCGUU------ACUUGG--AUAACUG--U-
G-GUAAUUCUAGAGCUAAUACAUGCCGACG-AGCGCC---G---------------A-CC
---U-----------------CC-G-----------------G----GG----------A
----CGCGU---GCAUUUAUCAGACC---AAAAC-C-AAC--------C-CGGG------
------------------CUC-G-----------------------CC-CGGCG-GCU-U
U-GGU-GA-CUCUAGAUAACCUCGAGCCGA--UCGCACG-CC---------------C-C
C-G-U--------------GGCGGCGACGACCCAUUCGAAUGUCUG-CCCUAUCA-ACUU
UCGAUGGUACUGUCUGUGCCUA-CCAUGGUGACCACGGGUAACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCACUCCCG--AC----CCGGGGAGGUAGUGACGAAAAAUAACAAUACAGG-AC
UC--UU-UC--GAGGCCC-UGUAAUUGGAAUGAGUCCACUU--------------UAA-A
U-C-----------------CUUUAACGAGGAUCCAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUC
GUAGUUGGAUCUUGGGAUCG-AGCU-G-G-CGG-UCCGCC--------------------
-GCGA----------------------------G-GC-GA---GCUACCGCCUGUCCCAG
CCCCUGUC----------------UCUCGGCG----------------------------
------------------------------------------------------------
---------------------CCCC-CUCGA-UGCUC-UUAACU-GAGU--GUCC-CGC-
-----GG-GG--------CCCGA-AGCG-UUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC-----UG---GCC------G-C--C--GGAAU-ACU-CCAGCUAGGAAUAAUGGAA
UAGGA----------CU-C--CGGUUCU--A-UU-UU-GUU-GGUU-----UUCGGA-AA
--C-GGG-GCC-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAG-AGGGACGGCC
G-GGGGCAUUCGUA-UUGUGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGAACU
AAAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGA
AGACGAUCAGAUACCGUC-GUAGUUCCGACCAUAAACGAUGC-CGACUCGCGAUCCGGCG
GCGUU-------------------------------------------------------
-AUUCCCAU---------------------------------------------------
-------------------GACCCGCCGGGCAGCUCCCGGGAAACC-C--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UUGCAAAGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-CCUC-
A-CCC-GGC-CC-GGACACGG-ACA-GGAUUGA-CAGAUUGAGAGC-UCUU-U-CUCGA-
--------------------UUCC-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCU-GGCAUGCUAACUAGUUA
CGCGACC-----------------------------------------------------
------------------------------------------------------------
---------------CC-CG--AGC-----------------------------------
------------------------------------------------------------
-----------------------------------------------G-GU-C-----G-
--G-C--G-UCC--AACUUCUUAGAGGGACA-AGUG-G----CGU-UCAGC-CA-CCCGA
-G-AUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUAC
ACUG-ACUGGCUCAGCUUGU-------------------------------GUC------
---------------------UACCCUACGCCGGCAGGCGCGGGUAACCCGU--UGAACC
CCA-UUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUG-AACGAGGAAUUCCCAGU
AAGUGCGG-GUCAUA-AGCUCGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGGAUGGUU-UAGUGAGGUCCUC-GGAUC-GGCCC-CG-GC-GGGG-
UCG-G-C-CA---CGG-CCCUGCCG-GAGCG-UCGAGAAG----------ACGGUCGAAC
UUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Guillardia_theta
----------------UACCUGGUUGAUCCUG-CCAGUAGUCAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUUAGUGUAAAAUAA-------------------CU---C-U
-----------------------A-U--U--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUCGU-UUAUUUGAUG-GUUCCUUACU----------ACAUGG--AUAACCG--U-
A-GUAAUUCUAGAGCUAAUACAUGCACCA--AGGCCC---G---------------A-CU
---------------------CA-C----------------------GG----------A
----GGGUU---GUAUUUAUUAGAUU--CAAAAC-C-AGC--------------------
------------------ACC-A---------------------------------CC-U
--GGU-GA-UUCAUAGUAACUAAA-CG-AA--CCGCAUG-CC---------------U-U
U-A-U--------------GGUGGCGGUGAUUCAUUCAAAUUUCUG-CCCUAUCA-ACUU
UCGAUGGUAGGAUAGAGGCCUA-CCAUGGUUUUAACGGGUGACGGAGAAUUAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAGACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCAAUCCCG--AC----UCGGGGAGGUAGUGACAAUAAAUAACAAUACAGG-GC
C---AA--C---GGU-CU-UGUUAUUGGAAUGAGAACAAUU--------------UAA-A
U-C-----------------CCUUAACGAGGAUCAAUUAGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCUAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUC
GUAGUCGGAAGUCGGGCUCG-GGCA-G-G-CUG-UCGGC---------------------
CUCG-------------------------------GU-U----GGGCAGCUUGCUUGGGU
CUUCU-------------------AGCUCGGGG---------------------------
------------------------------------------------------------
----------------------GCC-C-CGU-GCCAU-UUAACC-GUGG--UGCG-CG--
-----GG-AA-------CACGGG-CC-G-UUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC------C--UAC-------G-C--U--UGAAU-ACA-UUAGCAUGGAAUAAUGGAA
UAGGA----------CU-U--UGGUGCU--A-UU-UC-GUU-GGUU-----AAUGGG-AC
--C-GAA-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAA-AGGGACAGUU
G-GGGCCGUUUAUA-UUUCGUUGUCAGAGGUGAAAUUCUUGGAUUUACGAAAGAUAAACU
UCUGCGAAAGCAUUCGGCAAGGAUGUUUUCAUUGAUCAAGAACGAAAGUUAGGGGAUCGA
AGACGAUCAGAUACCGUC-GUAGUCUUAACCAUAAACUAUGC-CGACUAGGGAUCAGUGG
AUGUC-------------------------------------------------------
--AAUUUGC---------------------------------------------------
-------------------GACGCCAUUGGCACCUUGUGAGAAAUC-A--AAGUU-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAA-ACUU-
A-CCA-GGU-CC-AGACAUAG-UAA-GGAUUGA-CAGAUUGAAAGC-UCUU-U-CUUGA-
--------------------UUCU-AUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCUC-AGCCUGCUAACUAGCAU
CGCGAAUA----------------------------------------------------
------------------------------------------------------------
----------------U-U-----------------------------------------
------------------------------------------------------------
--------------------------------------------G--A-UU-G-------
--G-C--G-AG---GGCUUCUUAGAGGGACU-AUUU-G----UGU-UUAAU-GA-AUGGA
AGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUUCUGGGCCGCACGCGCGCUAC
ACUG-AUGAACGCAACGAGC-------------------------------UCGA-----
----------------------C-CCUGAACCGAAAGGCCUGGGUAA-ACUU-GUGAAAG
UUC-AUCGUGAUGGGGAUAGAUUAUUGCAAUUAUUAAUCUUC-AACGAGGAAUUCCUAGU
AAGCGCGA-GUCAUC-AGCUCGCGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUCCUACCGAUUGAAUGGUC-CGGUGAAAUCUUC-GGAUU-GCUGG-CC-AU-UUGC-
C---G-CA-A-----G-GUGAGU-G-G-U-U-GCGAGAAG----------UUGAUUGAAC
CUUAUCAUUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUGA---------------
>Homo_sapiens
----------------UACCUGGUUGAUCCUG-CCAGUAG-CAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUACGCACGGC-------------------CG---G-U
-----------------------ACA-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUGGU-UCCUUUGGUC-GCUCGCUCCUCUCCU-----ACUUGG--AUAACUG--U-
G-GUAAUUCUAGAGCUAAUACAUGCCGACG-GGCGCU---G---------------A-CC
---CC---------C-UU----C-GCGG------------GGG----GG----------A
----UGCGU---GCAUUUAUCAGAUC---AAAAC-C-AAC--------C-CGGUC-AGCC
CC-U-CUCCGG--C----CCC-G---GCCGGGGGGCGG----GC--GC-CGGCG-GCU-U
U-GGU-GA-CUCUAGAUAACCUCGGGCCGA--UCGCACG-CC---------------C-C
CCG-U--------------GGCGGCGACGACCCAUUCGAACGUCUG-CCCUAUCA-ACUU
UCGAUGGUAGUCGCCGUGCCUA-CCAUGGUGACCACGGGUGACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCACUCCCG--AC----CCGGGGAGGUAGUGACGAAAAAUAACAAUACAGG-AC
UC--UU-UC--GAGGCCC-UGUAAUUGGAAUGAGUCCACUU--------------UAA-A
U-C-----------------CUUUAACGAGGAUCCAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUC
GUAGUUGGAUCUUGGGAGCG-GGCG-G-G-CGG-UCCGCC--------------------
-GCGA----------------------------G-GC-GA---GCCACCGCCCGUCCCCG
CCCCUUGCC---------------UCUCGGCG----------------------------
------------------------------------------------------------
---------------------CCCC-CUCGA-UGCUC-UUAGCU-GAGU--GUCC-CGC-
-----GG-GG--------CCCGA-AGCG-UUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC----CCG--AGCC------G-C--C--UGGAU-ACC-GCAGCUAGGAAUAAUGGAA
UAGGA----------CC-G--CGGUUCU--A-UU-UU-GUU-GGUU-----UUCGGA-AC
--U-GAG-GCC-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAG-AGGGACGGCC
G-GGGGCAUUCGUA-UUGCGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGGACC
AGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGA
AGACGAUCAGAUACCGUC-GUAGUUCCGACCAUAAACGAUGC-CGACCGGCGAUGCGGCG
GCGUU-------------------------------------------------------
-AUUCCCAU---------------------------------------------------
-------------------GACCCGCCGGGCAGCUUCCGGGAAACC-A--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UUGCAAAGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-CCUC-
A-CCC-GGC-CC-GGACACGG-ACA-GGAUUGA-CAGAUUGAUAGC-UCUU-U-CUCGA-
--------------------UUCC-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCU-GGCAUGCUAACUAGUUA
CGCGACC-----------------------------------------------------
------------------------------------------------------------
---------------CC-CG--AGC-----------------------------------
------------------------------------------------------------
-----------------------------------------------G-GU-C-----G-
--G-C--GUCCCCCAACUUCUUAGAGGGACA-AGUG-G----CGU-UCAGC-CA-CCCGA
-G-AUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUAC
ACUG-ACUGGCUCAGCGUGU-------------------------------GCC------
---------------------UACCCUACGCCGGCAGGCGCGGGUAACCCGU--UGAACC
CCA-UUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUG-AACGAGGAAUUCCCAGU
AAGUGCGG-GUCAUA-AGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGGAUGGUU-UAGUGAGGCCCUC-GGAUC-GGCCC-CG-CC-GGGG-
UCG-G-CCCA---CGG-CCCUGGCG-GAGCG-CUGAGAAG----------ACGGUCGAAC
UUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Latimeria chalumnae
------------------CCUGGUUGAUCCUG-CCAGUAG-CAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUACAAACGGU-------------------GC---G-U
-----------------------ACA-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUGGU-UCCUUUGAUC-GCUCCAACGUU---------ACUCGG--AUAACUG--U-
G-GUAAUUCUAGAGCUAAUACAUGCCGACG-AGCGCU---G---------------A-CC
---UU-----------------------------------CGG----GG----------A
----UGCGU---GCAUUUAUCAGACC---AAAAC-C-AAU--------C-CGGG------
------------UC----C------------------------G--CC-CGGCC-GCU-U
U-GGU-GA-CUCUAGAUAACCUCGGGCCGA--UCGCACG-UC---------------C-U
C-G-U--------------GGCGGCGACGAUUCCUUCGAAUGUCUG-CCCUAUCA-ACUU
UCGAUGGUACUUUCUGUGCCUA-CCAUGGUGACCACGGGUAACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCACUCCCG--AC----GCGGGGAGGUAGUGACGAAAAAUAACAAUACAGG-AC
UC--UU-UC--GAGGCCC-UGUAAUUGGAAUGAGUACACUU--------------UAA-A
U-C-----------------CUUUAACGAGGAUCUAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAGUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUC
GUAGUUGGAUCUUGGGAUCG-AGCU-G-G-CGG-UCCGCC--------------------
-GCGA----------------------------G-GC-GA---GCUACCGCCUGUCCCAG
CCCCUGCC----------------UCUUGGCG----------------------------
------------------------------------------------------------
---------------------CUCC-CUUGA-UGCUC-UUAACU-GAGU--GUCC-UG--
-----GG-GG--------UCCGA-AGCG-UUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC-----CG---GUC------G-C--U--UGGAU-ACU-UCAGCUAGGAAUAAUGGAA
UAGGA----------CU-C--CGGUUCU--A-UU-UU-GUU-GGUU-----UUCGGA-AC
--U-GGG-GCC-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAG-AGGGACGGCC
G-GGGGCAUUCGUA-UUGUGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGGACA
AAAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGA
AGACGAUCAGAUACCGUC-GUAGUUCCGACCAUAAACGAUGC-CAACUACCGAUCCGGCG
GCGUU-------------------------------------------------------
-AUUUCCAU---------------------------------------------------
-------------------GACCCGCCGGGCAGGUUCCGGGAAACC-A--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UUGCAAAGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACCCAACACGGGAAA-CCUC-
A-CCC-GGC-CC-GGACACGG-AAA-GGAUUGA-CAGAUUGAUAGC-UCUU-U-CUCGA-
--------------------UUCU-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCC-UCCAUGCUAAAUAGUUA
CGCGACC-----------------------------------------------------
------------------------------------------------------------
---------------CC-G---AGU-----------------------------------
------------------------------------------------------------
-----------------------------------------------G-GU-C-----G-
--G-C--G-UCC--AACUUCUUAGAGGGACA-AGUG-A----CGU-UUAGC-CA-CACGA
-G-AUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUAC
ACUG-AAUGGAUCAGCGUGU-------------------------------GUC------
---------------------UACCCUACACCGACAGGUGCGGGUAACCCGU--UGAACC
CCA-UUCGUGAUAGGGAUCGGGGAUUGCAAUUAUUUCCCGUG-AACGAGGAAUUCCCAGU
AAGUGCGG-GUCAUA-AGCUCGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGGAUGGUU-UAGUGAGGUCCUC-GGAUC-GGACC-CG-CC-GGGG-
UCG-U-C-CG---CGG-CCCUGGCG-GAGCG-CUGAGAAG----------ACGAUCAAAC
UUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAG-
----------------------
>Leishmania_major
----------------GAUCUGGUUGAUUCUG-CCAGUAGUCAU-AUGCUUGUUUC-A-A
GGACUUAGCCAUGCAUGCCUCAGAAUCACUG---------------------CA---U-U
-----------------------UGC-AG--GA-AUC-U-GCG-CAUGGCUCAUUACAUC
AGACGUAAU-CUGCCGCAAA-AAUCUUGCGGUUUCCGCAA-AAUUGG--AUAACUU--G-
G-CGAAACGCCAAGCUAAUACAUGAACCAACCGGGUGUU-CUCCACUCCA-GACGG-UGG
--------------------GCA-A----------------------CCAUCGUCGUGA-
--GACGCCC---AGCGAAUGAAUGACAGUAAAAC-C-AAUGCCUUC-AC-UGG-------
----------------CAGUA-ACAC---------------------C-CAG---CAG-U
--GUU-GACUCAAUUCAUUCCGUG-CG-AA--AGCCGGC-UU---------------G-U
U-C-C------------------GGCGUCUUUUGA-CGAACAACUG-CCCUAUCA-GCUG
GUGAUGGCCGUGUAGUGGACUG-CCAUGGCGUUGACGGGAG-CGGGGGAUUAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAAUAGCUACCACUUCUACGG-AGGGCAGCAGGCGCGCA
AAUUGCCCAAUGUCA-AAACAAAACGAUGAGGCAGCGAAAAGAAAUAGAGUUGUCAG-UC
C---AU-UU---GGA-UU-GUCA-UUUCAAUGGGGGAUAUU--------------UAA-A
CCCA------------U-C-CAAUAUCGAGUAACAAUUGGAGGACAA-GUC-UGGUGCCA
GCACCCGCGGUAAUUCCAGCUCCAAAAGCGUAUAUUAAUGCUGUUGCUGUUAAAGGGUUC
GUAGUUGAACUGUGGGCUGU-GCAG-GU--UUGUUCCUGGUCGUCCCGUCC---------
--AUGUC----------------GGAUUUGGU-G-A-CC----CAGGCCCUUGCAGCCCG
UGAACAUUCAAAGAAACAAGA---AACACGGG--AGUGG---------------------
--------------------------------------------------UUCC------
-----------UUUCC--UGA---UU-U-ACG-CAUG-U--CAU-GCAU--GCCA--G--
-----GGG---GCG----UCCGU-GAUUUUUUACUGUGACUAAAGAAGCGUGACUAAAGC
AGUC------A--UUU-------G-A--C-UUGAAU-UAG-AAAGCAUGGGAUAACAAAG
GAGCAGCCUCUAGG-CU-ACCGUUUCGG--C-UU-UU-GUU-GGUU-----UUAAAG-GU
CUA-UUG-G-AGAUUAUGGAGCUGUGCGACAAGUGCUUUCCCAUCGCA---AC------U
UCG------GUUCGGUGUGUGGCGCCUUUGAGGGGUUUAGUGCGUCCGGUGCGAGCUCCG
GUUCGUCCGGCCGUAACGCCUUUUCAACUCACGGCCUCUAGGAAUGAAGGAGGGUAGUUC
G-GGGGAGAACGUA-CUGGGGCGUCAGAGGUGAAAUUCUUAGACCGCACCAAGACGAACU
ACAGCGAAGGCAUUCUUCAAGGAUACCUUCCUCAAUCAAGAACCAAAGUGUGGAGAUCGA
AGAUGAUUAGAGACCAUU-GUAGUCCACACUGCAAACGAUGA-CACCCAUGAAUUGGGGA
UCUUAUGGGCCGGCCUGCGGCAGGGUUUACCCUGUGUCAGCACCGCGCCCGC--------
--UUUUAC-------------CAACUUACGUAUCUUUUCUAUUCGGCCUUUACCGGCCAC
CCACGGGAAUAUCCUCAGCACGUUUUCUGUUUUUUCACGCGAAAGCUUU-GAGGU-----
---UACAGUCU-CAGGGGGGAGUACGU-UCGCAAGAG-UGAAACUUAAAGAAAUUGACGG
AAUGGCACCACAA-GACGUGGAGCGUGCGGUUUAAUUUGACUCAACACGGGGAA-CUUU-
A-CCA-GAU-CC-GGACAGGA-UGA-GGAUUGA-CAGAUUGAGUGU-UCUU-U-CUCGA-
--------------------UUCC-CUGA-AUGGUGGUGCAUGGCCGCUUUUGGUCGGUG
GA-GUGAUUUGUUUGGUUGAUUCCGUCAACGGACGAGAUCCA-AGC-UGCCCAGUAGAAU
UCAGAAUUGCCCAUAGAAUAGCAAACU--CA-UCGGCGGGU-------------------
------------------------------------------------------------
----------------U-UU----------------------------------------
------------------------------------------------------------
------------------------A--C-CCAACGGUG-GG-CCG-CA-UU-C------G
G-UCG----AA---UUCUUCUCUGCGGGAUUCCUUU-G---UAAU-UGCAC-AA-GGUGA
AAUUUUGGGCAACAGCAGGUCUGUGAUGCUCCUCAAUGUUCUGGGCGACACGCGCACUAC
AAUG-UCAGUGAGAACAAG--------AAAAA-------------------CGAC-----
----------UUUUGUCGAACCU-ACUUGAUCAAAAGAGUGGGGAAACCCCG-GAAUCAC
AUA-GACCCACUUGGGACCGAGGAUUGCAAUUAUUGGUCGCGCAACGAGGAAUGUCUCGU
AGGCGCAG-CUCAUC-AAACUGUGCCGAUUACGUCCCUGCCAUUUGUACACACCGCCCGU
CGUUGUUUCCGAU-GAUGGUGC-AAUACAGGUGAUC-GGACA-GGCGG-UG---------
----U-UU-U-------------AU-C-C-G-CCCGAAAG----------UUCACCGAUA
UUUCUUCAAUAGAGGAAGCAAAAGUCGUAACAAGGUAGCUGUAGGUGAACCUGCAGCUGG
AUCAUUUU--------------
>Monodelphis_domestica
------------------CCUGGUUGAUCCUGCCCAGUAG-CAU-AUGCUUGUCUCAA-A
AGAUUAAGCCAUGCAUGUCUAAGUACACACGGC-------------------CG---G-U
-----------------------ACA-GU--GA-AAC-U-GCGAAAUGGCUCAUUAAAUC
AGUUAUGGU-UCCUUUGGUC-GCUCGCUCCCUCCUA-----CUUUGG--AUAACUG--UG
G-GUAAUUCUAGAGCUAAUACAUGCCGACG-AGCGCU---G---------------A-CC
---CGGGCCCCCUUCCCC--CUC-GCGGGUGGGGGGCCCCCGG----GG----------A
----UGCGU---GCAUUUAUCAGACC---AAAAC-C-AAC--------C-CCGGC-GGCU
UC-C-CCCCAACCC----CCC-A---ACCAGGGGCCGGGGGUGC--CC-CGGCC-GCU-U
U-GGU-GACUCUAGAUAACCCUCGGGCCGA--UCGCACG-CC---------------C-C
CCG-U--------------GGCGGCGAUGACCCAUUCGAACGUCUGCCCCUAUCA-ACUU
UCGAUGGUACUUGCCGUGCCUACCCAUGGUGACCACGGGUGACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCACUCCCG--AC----CCGGGGAGGUAGUGACGAAAAAUAACAAUACAGG-AC
UCU-UU-UC--GAGGCCC-UGUAAUUGGAAUGAGUACACUU--------------UAA-A
U-C-----------------CUUUAACGAGGAUCCAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUC
GUAGUUGGAUCUUGGGAUCG-AGCU-G-G-CGG-UCCGCC--------------------
-GCGA----------------------------G-GC-GA---GCCACCGCCUGUCCCAG
CCCCUGCCU---------------UCUCGGCG----------------------------
------------------------------------------------------------
---------------------CCCC-CUCGA-UGCUCUUUAGCU-GAGU--GUCC-CGC-
-----GG-GG--------CCCGA-AGCGUUUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC----CCG--AGUC------GCC--C--UGGAU-ACC-CCAGCUAGGAAUAAUGGAA
UAGGA----------CC-C--CGGUUCU--AUUU-UU-GUU-GGUU-----UUCGGA-AC
--U-GGG-GCC-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAG-AGGGACGGCC
G-GGGGCAUUCGUAUUUGUGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGGACC
AGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGA
AGACGAUCAGAUACUCGUCGUAGUUCCGACCAUAAACGAUGCUCGACUAGCGAUCCGGCG
GCGUU-------------------------------------------------------
-AUUCCCAU---------------------------------------------------
------------------GACCCCGCCGGGCAGCUUCCGGGAAACC-A--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGGGUUGCAAAGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAAUCCUC-
A-CCCGGGC-CC-GGACACGG-AAA-GGAUUGA-CAGAUUGAUAGCUUCUU-U-CUCGA-
--------------------UUCU-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCU-GGCAUGCUAACUAGUUA
CGCGACC-----------------------------------------------------
------------------------------------------------------------
---------------CC-CGUUAGU-----------------------------------
------------------------------------------------------------
-----------------------------------------------G-GU-C-----G-
--G-U--C-GUCCCAACUUCUUAGAGGGACA-AGUG-G----CGU-UCAGCGCA-CCCGA
-G-AUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUAC
ACUG-ACUGGCUCAGCGUGU-------------------------------GCC------
---------------------UACCCUACGCCGGCAGGCGCGGGUAACCCGU--UGAACC
CCA-UUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUG-AACGAGGAAUUCCCAGU
AAGUGCGG-GUCAUA-AGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGGAUGGUU-UAGUGAGGUCCUC-GGAUC-GGCCC-CG-CC-GGGG-
UCG-G-CCCA---CGG-CCCUGGCG-GAGCG-CUGAGAAG----------ACGGUCGAAC
UUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAG-
----------------------
>Mus_musculus
----------------UACCUGGUUGAUCCUG-CCAGUAG-CAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUACGCACGGC-------------------CG---G-U
-----------------------ACA-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUGGU-UCCUUUGGUC-GCUCGCUCCUCUCCU-----ACUUGG--AUAACUG--U-
G-GUAAUUCUAGAGCUAAUACAUGCCGACG-GGCGCU---G---------------A-CC
---CC---------CCUU--CCC---GGG-----------GGG----GG----------A
----UGCGU---GCAUUUAUCAGAUC---AAAAC-C-AAC--------C-CGGUG-AGCU
CC-C-UCCCGG--C----UCC-G---GCCGGGGGUCGG----GC--GC-CGGCG-GCU-U
U-GGU-GA-CUCUAGAUAACCUCGGGCCGA--UCGCACG-CC---------------C-C
CCG-U--------------GGCGGCGACGACCCAUUCGAACGUCUG-CCCUAUCA-ACUU
UCGAUGGUAGUCGCCGUGCCUA-CCAUGGUGACCACGGGUGACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCACUCCCG--AC----CCGGGGAGGUAGUGACGAAAAAUAACAAUACAGG-AC
UC--UU-UC--GAGGCCC-UGUAAUUGGAAUGAGUCCACUU--------------UAA-A
U-C-----------------CUUUAACGAGGAUCCAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUC
GUAGUUGGAUCUUGGGAGCG-GGCG-G-G-CGG-UCCGCC--------------------
-GCGA----------------------------G-GC-GA---GUCACCGCCCGUCCCCG
CCCCUUGCC---------------UCUCGGCG----------------------------
------------------------------------------------------------
---------------------CCCC-CUCGA-UGCUC-UUAGCU-GAGU--GUCC-CGC-
-----GG-GG--------CCCGA-AGCG-UUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC----CCG--AGCC------G-C--C--UGGAU-ACC-GCAGCUAGGAAUAAUGGAA
UAGGA----------CC-G--CGGUUCU--A-UU-UU-GUU-GGUU-----UUCGGA-AC
--U-GAG-GCC-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAG-AGGGACGGCC
G-GGGGCAUUCGUA-UUGCGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGGACC
AGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGA
AGACGAUCAGAUACCGUC-GUAGUUCCGACCAUAAACGAUGC-CGACUGGCGAUGCGGCG
GCGUU-------------------------------------------------------
-AUUCCCAU---------------------------------------------------
-------------------GACCCGCCGGGCAGCUUCCGGGAAACC-A--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UUGCAAAGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-CCUC-
A-CCC-GGC-CC-GGACACGG-ACA-GGAUUGA-CAGAUUGAUAGC-UCUU-U-CUCGA-
--------------------UUCC-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCU-GGCAUGCUAACUAGUUA
CGCGACC-----------------------------------------------------
------------------------------------------------------------
---------------CC-CG--AGC-----------------------------------
------------------------------------------------------------
-----------------------------------------------G-GU-C-----G-
--G-C--GUCCCCCAACUUCUUAGAGGGACA-AGUG-G----CGU-UCAGC-CA-CCCGA
-G-AUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUAC
ACUG-ACUGGCUCAGCGUGU-------------------------------GCC------
---------------------UACCCUACGCCGGCAGGCGCGGGUAACCCGU--UGAACC
CCA-UUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUG-AACGAGGAAUUCCCAGU
AAGUGCGG-GUCAUA-AGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGGAUGGUU-UAGUGAGGCCCUC-GGAUC-GGCCC-CG-CC-GGGG-
UCG-G-CCCA---CGG-CCCUGGCG-GAGCG-CUGAGAAG----------ACGGUCGAAC
UUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Oryza_sativa
----------------UACCUGGUUGAUCCUG-CCAGUAGUCAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUGCAAGUAUGAACUAAU------------------UC---G-A
-----------------------ACU-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUAGU-UUGUUUGAUG-GUACGUGCU-----------ACUCGG--AUAACCG--U-
A-GUAAUUCUAGAGCUAAUACGUGCAACA--AACCCC---G---------------A-CU
---------------------UC-C----------------------GG----------G
A---GGGGC---GCAUUUAUUAGAUA--AAAGGC-U-GAC--------G-CGGGC-----
------------------UCC------------------------GCC-CGCUG-AUC-C
--GAU-GA-UUCAUGAUAACUCGA-CG-GA--UCGCACG-GC---------------C-C
UCG-U--------------GCCGGCGACGCAUCAUUCAAAUUUCUG-CCCUAUCA-ACUU
UCGAUGGUAGGAUAGGGGCCUA-CCAUGGUGGUGACGGGUGACGGAGAAUUAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCAAUCCUG--AC----ACGGGGAGGUAGUGACAAUAAAUAACAAUACCGG-GC
GC--UU-UA--GUGU-CU-GGUAAUUGGAAUGAGUACAAUC--------------UAA-A
U-C-----------------CCUUAACGAGGAUCCAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUUAAGUUGUUGCAGUUAAAAAGCUC
GUAGUUGGACCUUGGGCCGG-GCCG-G-C-CGG-UCCGCC--------------------
-UCAC----------------------------G-GC-G----AGCACCGACCUGCUCGA
CCCUU-------------------CUGCCGGCG---------------------------
------------------------------------------------------------
---------------------AUGC-GCUCC-UGGCC-UUAACU-GGCC--GGGU--C--
-----GU-GCC------UCCGGC-GC-C-GUUACUUUGAAGAAAUUAGAGUGCUCAAAGC
AAGC------C--AUC-------G-C--U-CUGGAU-ACA-UUAGCAUGGGAUAACAUCA
UAGGA----------UU-C--CGGUCCU--A-UU-GU-GUU-GGCC-----UUCGGG-AU
--C-GGA-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAU-AGGGACAGUC
G-GGGGCAUUCGUA-UUUCAUAGUCAGAGGUGAAAUUCUUGGAUUUAUGAAAGACGAACA
ACUGCGAAAGCAUUUGCCAAGGAUGUUUUCAUUAAUCAAGAACGAAAGUUGGGGGCUCGA
AGACGAUCAGAUACCGUC-CUAGUCUCAACCAUAAACGAUGC-CGACCAGGGAUCGGCGG
AUGUU-------------------------------------------------------
-GCUUAUAG---------------------------------------------------
-------------------GACUCCGCCGGCACCUUAUGAGAAAUC-A--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGCGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAA-ACUU-
A-CCA-GGU-CC-AGACAUAG-CAA-GGAUUGA-CAGACUGAGAGC-UCUU-U-CUUGA-
--------------------UUCU-AUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCUC-AGCCUGCUAACUAGCUA
UGCGGAGC----------------------------------------------------
------------------------------------------------------------
----------------C-AU--C-------------------------------------
------------------------------------------------------------
--------------------------------------------C--C-UC-C-------
--G-C--A-GCU--AGCUUCUUAGAGGGACU-AUGG-C----CGU-UUAGG-CC-ACGGA
AGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUUCUGGGCCGCACGCGCGCUAC
ACUG-AUGUAUCCAACGAGU-------------------------------AUAUA----
----------------------G-CCUUGGCCGACAGGCCCGGGUAA-UCUU-GGGAAAU
UUC-AUCGUGAUGGGGAUAGAUCAUUGCAAUUGUUGGUCUUC-AACGAGGAAUGCCUAGU
AAGCGCGA-GUCAUC-AGCUCGCGUUGACUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUCCUACCGAUUGAAUGGUC-CGGUGAAGUGUUC-GGAUC-GCGGC-GA-CG-GGGG-
CGG-U-UC-G---CCG-CCCCCGAC-G-U-C-GCGAGAAG----------UCCAUUGAAC
CUUAUCAUUUAGAGGAAGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUG---------------
>Pan_troglodytes
----------------UACUUGGUUGAUCCUA-CCAGUAC-CAU-AUGCUUGUCUC-A-A
AGAUUAUGCCAUACAUGUCUAAGUAGGCAGGGC-------------------CG---G-U
-----------------------ACA-GU--GA-AAC-U-ACG-AAUGGCUCAUUAAAUC
AGUUAUGGU-UCUUUUGGUC-GCUCGCUCCUCUCCU-----ACUUGG--AAAACUG--U-
G-GUAAUUCUAGAGCUAAUGCAUGCCGAAG-GGCGCU---G---------------A-CC
---CC---------C-UU----C-G--CG-----------GGGA---AG----------A
----UGCCU---GCAUUUAUCAGAUC---AAAAC-C-AAC--------C-CGGUC-AGCC
CC-U-CUCCAG--C----CCCUG---CCCAGGGGUCGA----G--UGC-CACCG-GCU-U
U-GGU-GA-CUCUAGAUAGCCUCGGGCCAA--UCGCACG-CC---------------CGC
CCG-U--------------GGCAGCAACGACCCAUUCGAACGUCUG-CCCUCUCA-ACUU
UUGAUGGUAGUCACUGUGCCUA-CCAUGGUGACCACGGGUGA---AGAAUCAGGGUUC-G
AUUCUGGAGAGGGAGCCUGAGAAAUGGCUACCACAUUCAAGG-AAGGCAGCAGGCAUGCA
AAUUACCCACUCCUG--AC----CCAAGGAGAUAGUGAUGAAACAUAAUAAUACAGG-AC
UC--UU-UU--GAGGUCC-UGUAAUUGGAAUGAGUCUACUU--------------UAA-A
U-C-----------------CUUUAACGAAGAUCCAUUGGAGGGCAA-GUC-UAGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUC
CUAGUUGGAUCUUGGGAGUG-GGCG-G-G-CGG-UCCGCC--------------------
-AUGA----------------------------G-GC-GA---GCCACUGCCCGUCCCCG
CCCCUUGCC---------------UCUUGGCA----------------------------
------------------------------------------------------------
---------------------CCCC-CUCGA-UGCUC-UUAGCU-GAGU--GUUC-UGC-
-----GG-----------CCCAA-AGCG-UCUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGU----CCG--AGCC------G-C--C--UGGAU-ACC-GCAGCUAGGAAUAAUGGAA
UAGGA----------CC-G--UGGUUCU--A-UU-UU-GCU-GGUU-----UUCGGA-AC
--U-GAG-GCC-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAG-AGGGACAGCU
G-GGGGCAUUUGUA-UUGCACCGCUAGAGGUGAAAUUCUUGGACUGGCACAGUUUGGACC
AGAGUGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGA
AGACGAUCAGAUACCGUG-GUAGUUCUGUCCAUAAACGAAGC-CGACUGGCAACGUGGCG
GUGUU-------------------------------------------------------
-AUUCCCAU---------------------------------------------------
-------------------GACCCGCUGGGCAGCUUCCAAGAAACC-A--AAGUCUUUGC
GUUUUUAGGUU-CCGGGGGGAGUAUGG-UUGCAAAGC-UGAAACUUAAAGGAAUUGGUGG
AAGGGCAACACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACAUGGGAAA-AAUC-
A-CCC-GAC-CC-AGACAGGG-ACC-UGAUUGA-CAGAUUGAUAGC-UAUU-U-CUCUG-
--------------------UUCC-AUGG-GUGGUGGUGCAUGGC----CUUAGUUGGUG
GA-GUGAUUUGUCUCGUUAAUUCCGAUAACCAACGAGACUCU-GGCAUGCUAACUAGUUA
CGUGACC-----------------------------------------------------
------------------------------------------------------------
---------------CC-CG--AGC-----------------------------------
------------------------------------------------------------
-----------------------------------------------G-GU-C-----A-
--G-C--AUCCCCCAACUUCUUAGAGGGACA-AGUG-G----CCU-UCAGC-CA-CCCGA
A--AUUGAGCAAUAACAGAUCUGUGAUGCCCUUAGAUGUCCGGGACUGCACGCGCGCUAC
ACUG---CUGCUCAGCGUGU-------------------------------GCC------
---------------------UACCCUACGU-GGCAGAGGCAGGUAACCUGU--UGAACC
CCA-UUCGUGAUGGGGAUGGGGGAUUGCAAUUAUUCCCCAUG-AAGGAGGAAUUUCCAGU
AAGUGCGG-GUCAUA-AGCUUGCCU-GAA---GUCCCUGCCCUAUGUACACACUGCCCGC
CUCUACUACUGAUAGGAUGGUU-UAGUGAGGCCCUC-UGAUC-AGC-C-CU-GC-CGGG-
UCA-G-CCCA---CUG-CCCUGGCG-GAGCG-CUGAGAAG----------ACAGUCGAAC
UUGACUAUCUAGAGGAAGUAAAAUUCGUAACAAGGUUUCGGUAGGUGAACCUGCGGAGGG
AUCAUUA---------------
>Plasmodium_falciparum
----------------AACCUGGUUGAUCUUG-CCAGUAGUCAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAAGUGAAAGUAUAUAUAUA-------------------UU---U-U
-----------------------AUAUGUA-GA-AAC-U-GCG-AACGGCUCAUUAAAAC
AGUUAUAGU-CUACUUGACA-UUUUUAUU------------AUAAGG--AUAACUA--C-
G-GAAAAGCUGUAGCUAAUACUUGCUUU---AUUAUCCUU-U---------------GAU
--------------------UUU-U----------------------AUC--------U-
-UUGGAUAA---GUAUUUGUUAGGCC------UUAU-AAGAAAA----A-----------
-----------------AGUU-A---------------------------UU--A-AC-U
U-AAG-GA-AUUAUAACAAAGAAGUAA-CA--CGUAAUA-A-----------AU---U-U
A-U-UUU------------AUUUAGUGUGUAUCAAUCGAGUUUCUG-ACCUAUCA-GCUU
UUGAUGUUAGGGUAUUGGCCUA-ACAUGGCUAUGACGGGUAACGGGGAAUUAGAGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAAUAGCUACCACAUCUAAGG-AAGGCAGCAGGCGCGUA
AAUUACCCAAUUCUA--AA----GAAGAGAGGUAGUGACAAGAAAUAACAAUGCAAG-GC
CA--AUUUU--UGGU-UU-UGUAAUUGGAAUGGUGGGAAUU--------------UAA-A
A-C-----------------CUUCCCAGAGUAACAAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAAUUGUUGCAGUUAAAACGCUC
GUAGUUGAAUUUCAAAGAAU-CGAUAUUU-UAUUGUAACUAUUCUAGGGGAACUAUUUUA
GCUUUUCGCUUUAAUACGCUUCCUCUAU--UA-UUA-UG----UUCUUUAAAUAACAAAG
AUUCUUUU----------------UAAAAUC-----------------------------
------------------------------------------------------------
------------------------C-C-CACUUUUGC--UUUU--GCUU--UUUUU-G--
-----GG-----------GAUUU--U---GUUACUUUGAGUAAAUUAGAGUGUUCAAAGC
AAACAGUUAAAG-CAUUUACUGUG-U--U--UGAAU-ACU-AUAGCAUGGAAUAACAAAA
UUGAA----------CA-A--GCUAAAA----UUUUUUGUUCUUUU--UUCUUAUUU-UG
--G-CUUAGUU-------------------------------------------------
------------------------------------------------------------
----------------------------------------ACGAUUAAU-AGGAGUAGCU
UGGGGACAUUCGUA-UUCAGAUGUCAGAGGUGAAAUUCUUAGAUUUUCUGGAGACGAACA
ACUGCGAAAGCAUUUGUCUAAAAUACUUCCAUUAAUCAAGAACGAAAGUUAAGGGAGUGA
AGACGAUCAGAUACCGUC-GUAAUCUUAACCAUAAACUAUGC-CGACUAGGUGUUGGAUG
AAAGUGUUAAAAAUAAAAGUCAUC------------------------------------
--UUUCGA----------------------------------------------------
----GGUGACUUUUAGAUUGCUUCCUUCAGUACCUUAUGAGAAAUC-A--AAGUC-----
---UUUGGGUU-CUGGGGCGAGUAUUC-GCGCAAGCG-AGAAAGUUAAAAGAAUUGACGG
AAGGGCACCACCA-GGCGUGGAGCUUGCGGCUUAAUUUGACUCAACACGGGGAA-ACUC-
A-CUA-GUU-UA-AGACAAGA-GUA-GGAUUGA-CAGAUUAAUAGC-UCUU-U-CUUGA-
--------------------UUUC-UUGG-AUGGUGAUGCAUGGCCGUUUUUAGUUCGUG
AAUAUGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGAUCUUAACCUGCUAAUUAGCGGC
GAGUACAC--------UAUA--------UU-CUUAUUUGAAAUUGAACAUAGGUAACUAU
ACAUUUAUUCAGUAAUCAAAUUAGGAUAUUUU----------------------------
---------------U-AU--U--------------------------------------
-----------AAAAUAUCCUUUUCCCUGUUCUACUAAUAAUUUGUUUUUUACUCUAUUU
CU---------CUC--------UU--C-UUUUAAGAA-UGUAC----U-UG-C-------
-UU-G--AUUGAAAAGCUUCUUAGAGGAACA-UUGU-G----UGU-CUAAC-AC-AAGGA
AGUUUAAGGCAACAACAGGUCUGUGAUGUCCUUAGAUGAACUAGGCUGCACGCGUGCUAC
ACUG-AUAUAUAUAACGAGU-UUUUA-AAAAUAUGCUUAUAUUUGUAUC--UUU-GAUGC
UUAUAUUUUGCAUACUUU----U-CCUCCGCCGAAAGGCGUAGGUAA-UCUUUAUCAAUA
UAU-AUCGUGAUGGGGAUAGAUUAUUGCAAUUAUUAAUCUUG-AACGAGGAAUGCCUAGU
AAGCAUGA-UUCAUC-AGAUUGUGCUGACUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUCCUACCGAUUGAAAGAUA-UGAUGAAUUGUUU-GGACA-AGAAA-AA-UU-GAA--
U---U-AU-A--------UUCUUUU-U-U-U-UCUGGAAA----------AACCGUAAAU
CCUAUCUUUUAAAGGAAGGAGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Rattus_norvegicus
----------------UACCUGGUUGAUCCUG-CCAGUAG-CAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUACGCACGGC-------------------CG---G-U
-----------------------ACA-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUGGU-UCCUUUGGUC-GCUCGCUCCUCUCCU-----ACUUGG--AUAACUG--U-
G-GUAAUUCUAGAGCUAAUACAUGCCGACG-GGCGCU---G---------------A-CC
---CC---------CCUU--CCC-G--UG-----------GGG----GG----------A
A---CGCGU---GCAUUUAUCAGAUC---AAAAC-C-AAC--------C-CGGUC-AGCC
CC-C-UCCCGG--C----UCC-G---GCCGGGGGUCGG----GC--GC-CGGCG-GCU-U
U-GGU-GA-CUCUAGAUAACCUCGGGCCGA--UCGCACG-UC---------------C-C
C-G-U--------------GGCGGCGACGACCCAUUCGAACGUCUG-CCCUAUCA-ACUU
UCGAUGGUAGUCGCCGUGCCUA-CCAUGGUGACCACGGGUGACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCACUCCCG--AC----CCGGGGAGGUAGUGACGAAAAAUAACAAUACAGG-AC
UC--UU-UC--GAGGCCC-UGUAAUUGGAAUGAGUCCACUU--------------UAA-A
U-C-----------------CUUUAACGAGGAUCCAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUC
GUAGUUGGAUCUUGGGAGCG-GGCG-G-G-CGG-UCCGCC--------------------
-GCGA----------------------------G-GC-GA---GCUCACCGCCCUGUCCC
CAGCCCCUGCC-------------UCUCGGCG----------------------------
------------------------------------------------------------
---------------------CCCC-CUCGA-UGCUC-UUAGCU-GAGU--GUCC-CGC-
-----GG-GG--------CCCGA-AGCG-UUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC----CCG--AGCC------G-C--C--UGGAU-ACC-GCAGCUAGGAAUAAUGGAA
UAGGA----------CC-G--CGGUUCU--A-UU-UU-GUU-GGUU-----UUCGGA-AC
--U-GAG-GCC-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAG-AGGGACGGCC
G-GGGGCAUUCGUA-UUGCGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGAACC
AGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGA
AGACGAUCAGAUACCGUC-GUAGUUCCGACCAUAAACGAUGC-CGACUGGCGAUGCGGCG
GCGUU-------------------------------------------------------
-AUUCCCAU---------------------------------------------------
-------------------GACCCGCCGGGCAGCUUCCGGGAAACC-A--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UUGCAAAGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-CCUC-
A-CCC-GGC-CC-GGACACGG-ACA-GGAUUGA-CAGAUUGAUAGC-UCUU-U-CUCGA-
--------------------UUCC-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCUCGGCAUGCUAACUAGUUA
CGCGACC-----------------------------------------------------
------------------------------------------------------------
---------------CC-CG--AGC-----------------------------------
------------------------------------------------------------
-----------------------------------------------G-GU-C-----G-
--G-C--GUCCCCCAACUUCUUAGAGGGACA-AGUG-G----CGU-UCAGC-CA-C-CGA
-G-AUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUAC
ACUGAACUGGCUCAGCGUGU-------------------------------GCC------
---------------------UACCCUACGCCGGCAGGCGCGGGUAACCCGU--UGAACC
CCA-UUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUG-AACGAGGAAUUCCCAGU
AAGUGCGG-GUCAUA-AGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGGAUGGUU-UAGUGAGGCCCUC-GGAUC-GGCCC-CG-CC-GGGG-
UCG-G-CCCA---CGG-CCUUGGCG-GAG-GCCUGAGAAG----------ACGGUCGAAC
UUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Saccharomyces_cerevisiae
----------------UAUCUGGUUGAUCCUG-CCAGUAGUCAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUAUAAGCAAU-------------------UU---A-U
-----------------------ACA-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUCGU-UUAUUUGAUA-GUUCCUUUACU---------ACAUGGU-AUAACUG--U-
G-GUAAUUCUAGAGCUAAUACAUGCUUAA--AAUCUC---G---------------A-CC
--------------------CUU-U----------------------GG----------A
A---GAGAU---GUAUUUAUUAGAUA--AAAAAU-C-AAU--------G-UC--------
------------------UUC-G--------------------------GACUC--UU-U
--GAU-GA-UUCAUAAUAACUUUU-CG-AA--UCGCAUG-GC---------------C-U
U-G-U--------------GCUGGCGAUGGUUCAUUCAAAUUUCUG-CCCUAUCA-ACUU
UCGAUGGUAGGAUAGUGGCCUA-CCAUGGUUUCAACGGGUAACGGGGAAUAAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCAAUCCUA--AU----UCAGGGAGGUAGUGACAAUAAAUAACGAUACAGG-GC
CC--AU-UC--GGGU-CU-UGUAAUUGGAAUGAGUACAAUG--------------UAA-A
U-A-----------------CCUUAACGAGGAACAAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUC
GUAGUUGAACUUUGGGCCCG-GUUG-G-C-CGG-UCCGAU--------------------
-UUU-----------------------------U-UC-G----UGUACUGGAUUUCCAAC
GGGGCCUUUC--------------CUUCUGGCU---------------------------
------------------------------------------------------------
---------------------AACC-U---U-GAGUC--CUUGU-GGCU--CU----U--
-----GG-CGA------ACCAGG-AC-U-UUUACUUUGAAAAAAUUAGAGUGUUCAAAGC
AGGC------GU-AUU-------G-C--U--CGAAU-AUA-UUAGCAUGGAAUAAUAGAA
UAGGA----------CGUU--UGGUUCU--A-UU-UU-GUU-GGUU-----UCUAGG-AC
--C-AUC-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAU-AGGGACGGUC
G-GGGGCAUCAGUA-UUCAAUUGUCAGAGGUGAAAUUCUUGGAUUUAUUGAAGACUAACU
ACUGCGAAAGCAUUUGCCAAGGACGUUUUCAUUAAUCAAGAACGAAAGUUAGGGGAUCGA
AGAUGAUCAGAUACCGUC-GUAGUCUUAACCAUAAACUAUGC-CGACUAGGGAUCGGGUG
GUGUU-------------------------------------------------------
-UUUUUAAU---------------------------------------------------
-------------------GACCCACUCGGCACCUUACGAGAAAUC-A--AAGUC-----
---UUUGGGUU-CUGGGGGGAGUAUGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAA-ACUC-
A-CCA-GGU-CC-AGACACAA-UAA-GGAUUGA-CAGAUUGAGAGC-UCUU-U-CUUGA-
--------------------UUUU-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGCUUAAUUGCGAUAACGAACGAGACCUU-AACCUACUAAAUAGUGG
UGCUAGC-----------------------------------------------------
------------------------------------------------------------
----------------A-UU--U-------------------------------------
------------------------------------------------------------
-----------------------------------------------G-CU-G-----GU
UAU-C---------CACUUCUUAGAGGGACU-AUCG-G----UUU-CAAGC-CG-AUGGA
AGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGACGUUCUGGGCCGCACGCGCGCUAC
ACUG-ACGGAGCCAGCGAGU-------------------------------CUA------
----------------------A-CCUUGGCCGAGAGGUCUUGGUAA-UCUU-GUGAAAC
UCC-GUCGUGCUGGGGAUAGAGCAUUGUAAUUAUUGCUCUUC-AACGAGGAAUUCCUAGU
AAGCGCAA-GUCAUC-AGCUUGCGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUAGUACCGAUUGAAUGGCU-UAGUGAGGCCUCA-GGAUC-UGCUU-AG-AG-AAGG-
GG--G-CA-A----CU-CCAUCUCA-G-A-G-CGGAGAAU----------UUGGACAAAC
UUGGUCAUUUAGAGGAACUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Schizosaccharomyces_pombe
----------------UACCUGGUUGAUCCUG-CCAGUAGUCAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUAUAAGCAAUU------------------UU---G-U
-----------------------ACU-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUCGU-UUAUUUGAUA-GUACCUCAACU---------ACUUGG--AUAACCG--U-
G-GUAAUUCUAGAGCUAAUACAUGCUAAA--AAUCCC---G---------------A-CU
--------------------UUUUU----------------------GG----------A
A---GGGAU---GUAUUUAUUAGAUA--AAAAAC-C-AAU--------G-C-C-------
------------------UUC-G------------------------G--GCUUU-UU-U
U-GGU-GA-GUCAUAAUAACUUUU-CG-AA--UCGCAUG-GC---------------C-U
U-G-C--------------GCCGGCGAUGGUUCAUUCAAAUUUCUG-CCCUAUCA-ACUU
UCGAUGGUAGGAUAGAGGCCUA-CCAUGGUUUUAACGGGUAACGGGGAAUUAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCAAUCCCG--AC----ACGGGGAGGUAGUGACAAGAAAUAACAAUGCAGG-GC
CC--UU-UC--GGGU-CU-UGUAAUUGGAAUGAGUACAAUG--------------UAA-A
U-A-----------------CCUUAACGAGGAACAAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUC
GUAGUUGAACUUUGAGCCUG-GUCG-A-C-UGG-UCCGCC--------------------
-GCAAG---------------------------GCGU-G----UUUACUGGUCAUGACCG
GGGUCGUU-------------AACCUUCUGGCA---------------------------
------------------------------------------------------------
---------------------AACU-ACUCA-UGUUC-UUUAUU-GAGC--GUGG--U--
-----AG-GGA------ACCAGG-AC-U-UUUACCUUGAAAAAAUUAGAGUGUUCAAAGC
AGGCAA----G--UUU------UG-C--U--CGAAU-ACA-UUAGCAUGGAAUAAUAAAA
UAGGA----------CGUG--UGGUUCU--A-UU-UU-GUU-GGUU-----UCUAGG-AC
--C-GCC-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAU-AGGGAUAGUC
G-GGGGCAUUCGUA-UUCAAUUGUCAGAGGUGAAAUUCUUGGAUUUAUUGAAGACGAACU
ACUGCGAAAGCAUUUGCCAAGGAUGUUUUCAUUAAUCAAGAACGAAAGUUAGGGGAUCGA
AGACGAUCAGAUACCGUC-GUAGUCUUAACCAUAAACUAUGC-CGACUAGGGAUCGGGCA
AUGUU-------------------------------------------------------
UCAUUUAUC---------------------------------------------------
-------------------GACUUGCUCGGCACCUUACGAGAAAUC-A--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACAAUGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAA-ACUC-
A-CCA-GGU-CC-AGACAUAG-UAA-GGAUUGA-CAGAUUGAGAGC-UCUU-U-CUUGA-
--------------------UUCU-AUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGCUUAAUUGCGAUAACGAACGAGACCUU-AACCUGCUAAAUAGCUG
GAUCAGCC----------------------------------------------------
------------------------------------------------------------
---------------AU-UU--U-------------------------------------
------------------------------------------------------------
--------------------------------------------G--G-CU-G-------
--A-U--C-AUU--AGCUUCUUAGAGGGACU-AUUG-G----CAU-AAAGC-CA-AUGGA
AGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUUCUGGGCCGCACGCGCGCUAC
ACUG-ACGGAGCCAACGAGUUGA----AAAAAAUC---------------UUUU------
----------GAUUUUUUA---U-CCUUGGCCGGAAGGUCUGGGUAA-UCUU-GUUAAAC
UCC-GUCGUGCUGGGGAUAGAGCAUUGCAAUUAUUGCUCUUC-AACGAGGAAUUCCUAGU
AAGCGCAA-GUCAUC-AGCUUGCGUUGAAUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGAAUGGCU-UAGUGAGGCCUCU-GGAUU-GGCUU-GU-UU-CUGC-
UG--G-CA-A----CG-GCGGAAACAU-U-G-CCGAGAAG----------UUGGACAAAC
UUGGUCAUUUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Tetrahymena_thermophila
----------------AACCUGGUUGAUCCUG-CCAGUUA-CAU-AUGCUUGUCUU-A-A
AUAUUAACCCAUGCAUGUGCCAGUUCAGUA----------------------UU---G-A
-----------------------ACA-GC--GA-AAC-U-GCG-AAUGGCUCAUUAAAAC
AGUUAUAGU-UUAUUUGAUA-AUUAAAGAUU----------ACAUGG--AUAACCG--A-
G-CUAAUUGUUGGGCUAAUACAUGCUUAAA-AUUCCG--------------------UGU
---------------------CC-U----------------------GCG---------A
C--CGGAAC---GUAUUUAUUAGAUA--UUAGAC-C-AAU--------C-GCA-------
------------------GCA-A------------------------U-GUGA----U-U
GAGAU-GA-AUCAAAGUAACUGAU-CG-GA--UCGAGG-------------------U-U
U-A------------------CCUCGAUAAAUCAUCUAAGUUUCUG-CCCUAUCA-GCUC
UCGAUGGUAGUGUAUUGGACUA-CCAUGGCAGUCACGGGUAACGGAGAAUUAGGGUUC-G
AUUCCGGAGAAGGAGCCUGAGAAACGGCUACUACAACUACGGUUCGGCAGCAGGGAAGAA
AAUUGGCCAAUCCUA--AU----UCAGGGAGCCAGUGACAAGAAAUAGCAAGCUGGG-AA
AC--UU-AC--GUUU-CUACGGCAUUGAAAUGAGAACAGUG--------------UAA-A
U-C-----------------UCUUAGCGAGGAACAAUUGGAGGGCAA-GUCAUGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUC
GUAGUUGAACUUCUGUUCAG-GUUC-A-UUUCG-A-------------------------
-UUCG---------------------------------------UCGUGUGAAACUGGAC
AUA---------------------CGUUUGCAA---------------------------
------------------------------------------------------------
----------------------ACUAA-AAU-CGGCC-UUCACU-GGUU-CGACU--U--
-----AG-GG-------AGUAAA-CA-U-UUUACUGUGAAAAAAUUAGAGUGUUCCAGGC
AGGU------U--UUA-------G-C--C--CGAAU-ACA-UUAGCAUGGAAUAAUGGAA
UAGGA----------CU-A--AGUCCAU-----U-UU-AUU-GGUU-------CUUG-GA
--U-UUG-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAU-AGGGACAGUU
G-GGGGCAUUAGUA-UUUAAUAGUCAGAGGUGAAAUUCUUGGAUUUAUUAAGGACUAACU
AAUGCGAAAGCAUUUGCCAAAGAUGUUUUCAUUAAUCAAGAACGAAAGUUAGGGGAUCAA
AGACGAUCAGAUACCGUC-GUAGUCUUAACUAUAAACUAUAC-CGACUCGGGAUCGGCUG
GAA---------------------------------------------------------
---UAAAU----------------------------------------------------
--------------------GUCCAGUCGGCACCGUAUGAGAAAUC-A--AAGUC-----
---UUUGGGUU-CUGGGGGAAGUAUGGUACGCAAGUC-UGAAACUUAAAGGAAUUGACGG
AACAGCA-CACCA-GAAGUGGAACCUGCGGCUUAAUUUGACUCAACACGGGGAA-ACUC-
A-CGA-GCG-CA-AGACAGAG-AAG-GGAUUGA-CAGAUUGAGAGC-UCUU-U-CUUGA-
--------------------UUCU-UUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCUU-AACCUGCUAACUAGUCU
GCUUGU------------------------------------------------------
------------------------------------------------------------
---------------AA-AU--A-------------------------------------
------------------------------------------------------------
-------------------------------------------------AC-A-------
--G-GU---U---GUACUUCUUAGAGGGACU-AUUGUG----CAA-UAAGC-CA-AUGGA
AGUUUAAGGCAAUAACAGGUCUGUGAUGCCCCUAGACGUGCUCGGCCGCACGCGCGUUAC
AAUG-ACUGGCGCAAAAAGU-------------------------------AUU------
----------------------UCCUGUCCUGGGAAGGUACGGGUAA-UCUU-AUUAAUA
CCA-GUCGUGUUAGGGAUAGUUCUUUGGAAUUGUGGAUCUUG-AACGAGGAAUUUCUAGU
AAGUGCAA-GUCAUC-AGCUUGCGUUGAUUAUGUCCCUGCCGUUUGUACACACCGCCCGU
CGCUUGUAGUAAC-GAAUGGUC-UGGUGAACCUUCU-GGACU-GCGAC-A----------
----G-CA-A--------------U-G-U-U-GCGGAAAA----------AUAAGUAAAC
CCUACCAUUUGGAACAACAAGAAGUCGUAACAAGGUAUCUGUAGGUGAACCUGCAGAUGG
AUCAUUA---------------
>Thalassiosira_pseudonana
----------------UACCUGGUUGAUUCUG-CCAGUAGUCAU-ACGCUCGUCUC-A-A
AGAUUAAGCCAUGCAUGUCUAAGUAUAACCA---------------------UU---A-U
-----------------------ACA-GG--AA-AAC-U-GCG-AACGGCUCAUUAUAUC
AGUUAUUGU-UUCUUUGAUA-GUCCCUUACU----------ACUUGG--AUACCUG--U-
A-GUAAUUCUAGAGCUAAUACAUGCAUCA--AUACCC---G---------------A-CU
---G----------------UUC-G-----------------C----GG----------A
A---GGGUA---GUAUUUAUUAGGUA---UAGAC-C-AAC--------C-GUC-------
------------------UUC-G------------------------G-ACGUG-CUU-U
--GGU-GA-UUCAUAAUAACUUAU-CG-GA--UCGCAUG-GC---------------U-C
C-A-U--------------GCCGGCGAUGGAUCAUUCAAGUUUCUG-CCCUAUCA-GCUU
UGGAUGGUAGUGUAUUGGACUA-CCAUGGCUUUAACGGGUAACGAAUUGUUAGGGCAA-G
AUUUCGGAGAGGGAGCCUGAGAGACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGUA
AAUUACCCAAUACUG--AA----ACAGUGAGGUAGUGACAAUAAAUAACAAUGCCGG-GC
CU--UU-AC--AGGU-CU-GGCAAUUGGAAUGAGAACAAUU--------------UAA-A
U-C-----------------CCUUAUCGAGUAUCAAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUC
GUAGUUGGAUUUCUGGCAGG-AGCG-A-C-CGG-UCUCACAC------------------
-UCA-------------------------G-U-G-CG-A----GAACUCGUGUUGUCUCU
GGCCAUCC----------------UUGGGGAUA---------------------------
------------------------------------------------------------
----------------------UCC-U-GUU-UGGCA-UUAAGU-UGUC--GGGC--A--
-----GG-GG-------AUACCC-AUCG-UUUACUGUGAAAAAAUUAGAGUGUUUAAAGC
AGGC------U--UAU-------G-C--CGUUGAAU-AUA-UUAGCAUGGAAUAAUAAGA
UAGGA----------CC-C--UGGUACU--A-UU-UU-GUU-GGUU------UGCGC-AC
--C-GAG-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAA-AGAGACAGGC
G-GGGCUAUUCGUA-UUGCAUUGUCAGAGGUGAAAUUCUUGGAUUUCUGCAAGACGAACU
ACUGCGAAAGCAUUUAGCAAGGAUGUUUUCAUUAAUCAAGAACGAAAGUUAGGGGAUCGA
AGAUGAUUAGAUACCAUC-GUAGUCUUAACCAUAAACUAUGC-CGACUCGGGAUUGGCGG
UUGUU-------------------------------------------------------
---UU-UU----------------------------------------------------
-------------------GACUCCGCCAGCACCGUAUGAGAAAUC-A--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UCGCAAGGC-UGAAACUUAAAGAAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-ACUU-
A-CCA-GGU-CC-AGACAUAG-UGA-GGAUUGA-CAGAUUGAGAGU-UCUU-U-CUUGA-
--------------------UUCU-AUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCGC-CGCCUGCUAAAUAGUUC
UGCGAAUGG---------------------------------------------------
------------------------------------------------------------
----------------U-UU--U-------------------------------------
------------------------------------------------------------
-------------------------------------------UC--A-UU-G-------
--G-CAA--G----AGCUUCUUAGAGGGACG-UUCA-U---UCUA-CAAGA-UG-AAGGA
AGAUGGCGGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCUGGGCCGCACGCGCGCUAC
ACUG-AUGCACUCAACGAGC-------------------------------AUAUA----
----------------------A-CCUUGGCCGAGAGGCCUGGGUAA-UCUU-GUUAACA
UGC-AUCGUGAUAGGGAUAGAUUAUUGCAAUUAUUAAUCUUG-AACGAGGAAUUCCUAGU
AAUCGCAG-AUCAUC-AAUCUGCAAUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCACCUACCGAUUGGAUGGUC-CGGUGAGGAGUCG-AGAUU-GUGGC-CU-GG-UUCC-
U---U-UA-U-----U-GGGAUUUG-G-C-U-ACGAGAAC----------UUCUCCAAAC
CUUAUCAUCUAGAGGAAGGUGAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Trypanosoma_brucei
----------------GAUCUGGUUGAUUCUG-CCAGUAGUCAU-AUGCUUGUUUC-A-A
GGACUUAGCCAUGCAUGCCUCAGAAUCACUG---------------------CA---U-U
-----------------------GCA--G--GA-AUC-U-GCG-CAUGGCUCAUUACAUC
AGACGUAAU-CUGCCGCCAA-AAUUUUGCGGUCUCCGCAUUACU-GG--AUAACUU--G-
G-CGAAACGCCAAGCUAAUACAUGAACCAAUCGGACGCU-CUCUUUUUCUAUGUCG-CGG
CUUGU---------GU----UUA-C---G-----------CAC-UUGUCGUGGCGAUGG-
--GACGUCC---AGCGAAUGAAUGAAAUUAGAAC-C-AACGCCUCCACCCGGG-------
--------------GGCAGUA-ACAC---------------------U-CAG---ACG-U
--GUU-GACUCAAUUCAUUCCGUG-CG-AA--AGCCGAG-C----------------CUU
G-U-U--------------GCUCGGCGUCUACUGA-CGAACAACUG-CCCUAUCA-GCCA
GUGAUGGCCGUGUAGUGGACUG-CCAUGGCGUUGACGGGAG-CGGGGGAUUAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAAUAGCUACCACUUCUACGG-AGGGCAGCAGGCGCGCA
AAUUGCCCAAUGUCG-AAAAAAUACGAUGAGGCAGCGAAAAGAAAUAGAGCCGACCG-UG
CC--CU-AG--UGCA-UG-GUUGUUUUCAAUGGGGGAUACU--------------CAA-A
CCCA------------U-C-CAAUAUCGAGUAACAAUUGGAGGACAA-GUC-UGGUGCCA
GCACCCGCGGUAAUUCCAGCUCCAAAAGCGUAUAUUAAUGCUGUUGCUGUUAAAGGGUUC
GUAGUUGAACUGUGGGCCACGUAGUUU--UGUGCC-GUGCCAGUCCCGUCC---------
ACCUC----------------GGA-CGUGUUUUG-ACCC-----ACGCCCUCGUGGCCCG
UGAACACACUCAGAUACAAGAA--ACACGGG--AGCGG----------------------
-------------------------------------------------UUCC-------
----------UCCUC--ACU---UU-C-ACG-CAUGU---CAU--GCAU--GCGA--G--
-----GGG---GCG----UCCGU-GAAU-UUUACUGUGACCAAAAAAGUGCGACCAAAGC
AGUC------U--GCC-------G-A--C-UUGAAU-UAC-AAAGCAUGGGAUAACGAAG
CAUCAGCCCUGGGG-CC-ACCGUUUCGG--C-UU-UU-GUU-GGUU-----UUAGAA-GU
CCU-UGG-G-AGAUUAUGGGGCCGCGUGCCUUGGGUC-----GG-UGUUUCGUGUCUCAU
UUUUGUGGCGCGCA----CAUUCGGCU-CUUCGUGAUGUUU-------------------
UUUUAC----------AUUCAUUGCGACGCGCGGCUUCCAGGAAUGAAG-GAGGGUAGUU
CGGGGGAGAACGUA-CUGGUGCGUCAGAGGUGAAAUUCUUAGACCGCACCAAGACGAACU
ACAGCGAAGGCAUUCUUCAAGGAUACCUUCCUCAAUCAAGAACCAAAGUGUGGGGAUCAA
AGAUGAUUAGAGACCAUU-GUAGUCCACACUGCAAACCAUGA-CACCCAUGAAUUGGGGA
ACAUCAUUGGGUGCCCGUGUGGCGGCCUUUUGUGCCGACCCUCGGCCCCAAUUUAUUUAU
CAAUUUACGUGCCUAUUCUAUCACCCCCGGUUCCCUCUUUUGAGGUUCUUCCGGGGUUUU
UUACGGGAAUAUCCUCAGCACGUUUCUUACUUCUUCACGCGAAAGCUUG-GAGGU-----
---UACAGUCU-CAGGGGGGAGUACGU-UCGCAAGAG-UGAAACUUAAAGAAAUUGACGG
AAUGGCACCACAA-GACGUGGAGCGUGCGGUUUAAUUUGACUCAACACGGGGAA-CUUU-
A-CCA-GAU-CC-GGACAGGG-UGA-GGAUUGA-CAGAUGGAGUGU-UCUU-U-CUCGA-
--------------------UCCC-CUGA-AUGGUGGUGCAUGGCCGCUUUUGGUCGGUG
GA-GUGAUUUGUUUGGUUGAUUCCGUCAACGGACGAGAUCCA-AGC-UGCCCAGUAGGUG
CCGGGAUUGUCCACACAGGACAGCAGUCCCU-CCGGCGGGGAU-----------------
------------------------------------------------------------
----------------U-UU----------------------------------------
------------------------------------------------------------
--------------U--------UC--C-CCAACGGUG-GU--CGUCA-UC-CUUCUUUU
UACAG---GC----CCCUUCUCUGCGGGAUU-CCUU-G--CUUUU-CGCGC-AA-GGUGA
GAUUUUGGGCAACAGCAGGUCUGUGAUGCUCCUCAAUGUUCUGGGCGACACGCGCACUAC
AAUG-UCAGUGAGAACAAGA---GUCCGAGCGGCA--------------CUUCACAA---
----------UGUCGCUCC---C-GCUUGAUCAAAAGAGCGGGGAAACCACG-GAAUCAC
GUA-GACCCACUUGGGACCGAGUAUUGCAAUUAUUGGUCGCGCAACGAGGAAUGUCUCGU
AGGCGCAG-CUCAUC-AAACUGUGCCGAUUACGUCCCUGCCAUUUGUACACACCGCCCGU
CGUUGUUUCCGAU-GAUGGUGC-AAUACAGGUGAUC-GGACC-GUCGC-UC-G-------
----U-CU--------------CGG-G-C-G-ACCGAAAG----------UUCACCGAUA
UUGCUUCAAUAGAGGAAGCAAAAGUCGUAACAAGGUAGCUGUAGGUGAACCUGCAGCUGG
AUCAUUU---------------
>Yarrowia_lipolytica
----------------UAUCUGGUUGAUCCUG-CCAGU---CAU-AUGCUUGUCUC-A-A
AGACUAAGCCAUGCAUGUCUAAGUAUAAACAA--------------------UU---A-U
-----------------------ACA-GU--GA-AAC-U-GCG-AACGGCUCAUUAAAUC
AGUUAUCGU-UUAUUUGAUA-GUUUUCU-------------ACAUGG--AUAACCG--U-
G-AUAACUUCAGAACUAAUACAUGA------CAGC-----------------------CU
---------------------UC-U----------------------GG-----------
C---G--------UAUAUAUUAGAUA--CAA-AC-C-AA---------------------
--------------------C----------------------------AG-U---AU--
--GGU-GA-UUCAUAAUAUCUUGU-CG-AA--CCG-AU-------------------C-U
U-----------------------CGGUGUAUCAUUCAAAUUUCUG-CCCUAUCA-ACUG
UCGAUGGUAGGAUCGUGGCCUA-CCAUGGUAACAACGGGUAACGGGGAAUCAGGGUUC-U
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCAAUCCUG--AC----ACAGGGAGGUAGUGACAAUAUAUAACGAUCCGGG-GC
UC--UU--U--GAGU-UU-CGGAAUUGGAAUGAGUACAAUU--------------UAA-A
C-A-----------------CCUUAACGAGGAACAAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAUGUUGUUGCAGUUAAAAAGCUC
GUAGUUGAAAUUGGGCGGGC-U--------------------------------------
--AU-----------------------------U--A-G----UUUAGGCCGC----UUC
----------------------------AGGAA---------------------------
------------------------------------------------------------
--------------------GAAC--U-------------UCU--------------U--
------------------CCA-G-------UUACUUUGAAAAAAUUAGAGUGUUCAACGC
AGGU------U---UC-------G-C--C--UGAAU-AUA-UUAGCAUGGAAUAACAUAA
CACGA----------CG-A--GGGUCC---A-UU-UU-GUU-GGCU-----UGCAA--AC
--C-CAC-GUA-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAU-AGGGACAGUC
G-GGGGCGUCAGUA-UUGUGUUGUCAGAGGUGAAAUUCUUGGAUUUACACAAGACUAACU
ACUGCGAAGGCAUUCGCCAAGGAUGUAUUCAUUAAUCAAGAACGAAAGUUAGGGGAUCAA
AGAUGAUCAGAUACCGUC-GUAGUCUUAACCGUAAACUAUGC-CGACUGAGAAUGGGUAC
CG----------------------------------------------------------
---CUUAU----------------------------------------------------
--------------------ACGGUAUCCGCGCUCUACGAGAAAUC-A--AAGUG-----
---AUCAGGUU-CUGGGGGGAGUAUGG-UCGCAAGGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGGAC-UGCGGCUUAAUUUGACUCAACACGGGGAA-ACUC-
A-CCA-GGU-CC-AGACACAA-UAA-GGAUUGA-CAGAUUGAUAGC-UCUU-U-CUUGA-
--------------------UUUU-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GUGAUUUGUCUGCUUAAUUGCGAUAACGAACGAGACCUU-GACCUACUAAAUAGCUC
UACNNC------------------------------------------------------
------------------------------------------------------------
----------------G-AU--U-------------------------------------
------------------------------------------------------------
-----------------------------------------------G-CA-G-------
--G-U--A-GCU--AGCUUCUUAGAGGGACU-AUCU-A----UUA-CAAGU-AG-AUGGA
AGUUCGAGGCAAUAACAGGUCUGUGAUGCCCUUAGACGUUCUGGGCCGCACGCGCGCUAC
ACUG-ACGGAGCCAGCGAGU-------------------------------CG-------
----------------------A-CCAAGCCCGAGAGGGCUAGGUAA-UCUU-GUGAAAC
UCC-GUCGUGCUGGGGAUAGAGCAUUGCAAUUAUUGCUCUUC-AACGAGGAAUUCCUAGU
AAGCGCAA-GUCAUC-AGCUUGCGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGAAUGGUU-UAGUGAGACCUUG-GGAG--GGC-G-AG-AU-GAGG-
GGG-G-CA-A----CC-CC-UUUUG-A-A-C-AUCCAAAC----------UUGGUCAAAC
UUGAUUAUUUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
>Xenopus_laevis
----------------UACCUGGUUGAUCCUG-CCAGUAG-CAU-AUGCUUGUCUC-A-A
AGAUUAAGCCAUGCACGUGUAAGUACGCACGGC-------------------CG---G-U
-----------------------ACA-GU--GA-AAC-U-GCG-AAUGGCUCAUUAAAUC
AGUUAUGGU-UCCUUUGAUC-GCUCCAUCUGUU--------ACUUGG--AUAACUG--U-
G-GUAAUUCUAGAGCUAAUACAUGCCGACG-AGCGCU---G---------------A-CC
---CC-----------------------------------CAG----GG----------A
----UGCGU---GCAUUUAUCAGACC---AAAAC-C-AAU--------C-CGGG------
------------GC----CCC-C---GC--------------GC--CC-CGGCC-GCU-U
U-GGU-GA-CUCUAGAUAACCUCGGGCCGA--UCGCACG-UC---------------C-C
C-G-U--------------GACGGCGACGAUACAUUCGGAUGUCUG-CCCUAUCA-ACUU
UCGAUGGUACUUUCUGCGCCUA-CCAUGGUGACCACGGGUAACGGGGAAUCAGGGUUC-G
AUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGG-AAGGCAGCAGGCGCGCA
AAUUACCCACUCCCG--AC----GCGGGGAGGUAGUGACGAAAAAUAACAAUACAGG-AC
UC--UU-UC--GAGGCCC-UGUAAUUGGAAUGAGUACACUU--------------UAA-A
U-C-----------------CUUUAACGAGGAUCUAUUGGAGGGCAA-GUC-UGGUGCCA
GCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUC
GUAGUUGGAUCUUGGGAUCG-AGCU-G-G-CGG-UCCGCC--------------------
-GCGA----------------------------G-GC-GA---GCUACCGCCUGUCCCAG
CCCCUGCC----------------UCUCGGCG----------------------------
------------------------------------------------------------
---------------------CCUC-CCCGA-UGCUC-UUGACU-GAGU--GUCC-CG--
-----GG-GG--------CCCGA-AGCG-UUUACUUUGAAAAAAUUAGAGUGUUCCAAGC
AGGC-----CG--CGUC------G-C--C--UGGAU-ACU-UCAGCUAGGAAUAAUGGAA
UAGGA----------CU-C--CGGUUCU--A-UU-UU-GUU-GGUU-----UUCGGA-AC
--U-GGG-GCC-------------------------------------------------
------------------------------------------------------------
----------------------------------------AUGAUUAAG-AGGGACGGCC
G-GGGGCAUUCGUA-UUGUGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGAACC
AAAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGA
AGACGAUCAGAUACCGUC-GUAGUUCCGACCAUAAACGAUGC-CGACUAGCGAUCCGGCG
GCGUU-------------------------------------------------------
--AUUCCCAU--------------------------------------------------
-------------------GACCCGCCGAGCAGCUUCCGGGAAACC-A--AAGUC-----
---UUUGGGUU-CCGGGGGGAGUAUGG-UUGCAAAGC-UGAAACUUAAAGGAAUUGACGG
AAGGGCACCACCA-GGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAA-CCUC-
A-CCC-GGC-CC-GGACACGG-AAA-GGAUUGA-CAGAUUGAUAGC-UCUU-U-CUCGA-
--------------------UUCU-GUGG-GUGGUGGUGCAUGGCCGUUCUUAGUUGGUG
GA-GCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCC-UCCAUGCUAACUAGUUA
CGCGACC-----------------------------------------------------
------------------------------------------------------------
---------------CC-CG--GC------------------------------------
------------------------------------------------------------
-----------------------------------------------G-GU-C-----G-
--G-C--G-UCC--AACUUCUUAGAGGGACA-AGUG-G----CGU-UCAGC-CA-CACGA
-G-AUCGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUAC
ACUG-AACGGAUCAGCGUGU-------------------------------GUC------
---------------------UACCCUGCGCCGACAGGUGCGGGUAACCCGC--UGAACC
CCG-UUCGUGAUAGGGAUCGGGGAUUGCAAUUAUUUCCCAUG-AACGAGGAAUUCCCAGU
AAGUGCGG-GUCAUA-AGCUCGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGU
CGCUACUACCGAUUGGAUGGUU-UAGUGAGGUCCUC-GGAUC-GGCCC-CG-CC-GGGG-
UCG-G-C-CA---CGG-CCCUGGCG-GAGCG-CCGAGAAG----------ACGAUCAAAC
UUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGG
AUCAUUA---------------
